Wall clock time and date at job start Mon Mar 30 2020 02:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46958 * 2 1 4 4 C 1.50693 * 109.47016 * 240.00463 * 2 1 3 5 5 H 1.07998 * 120.00275 * 242.34233 * 4 2 1 6 6 C 1.37877 * 120.00207 * 62.33455 * 4 2 1 7 7 N 1.31519 * 119.99980 * 356.95749 * 6 4 2 8 8 Si 1.86804 * 120.00142 * 176.94845 * 6 4 2 9 9 H 1.48497 * 109.47220 * 94.99837 * 8 6 4 10 10 H 1.48498 * 109.47188 * 215.00094 * 8 6 4 11 11 H 1.48499 * 109.47102 * 334.99564 * 8 6 4 12 12 C 1.52998 * 109.47121 * 120.00270 * 2 1 3 13 13 H 1.09000 * 115.58563 * 78.25921 * 12 2 1 14 14 C 1.53145 * 117.51672 * 224.04686 * 12 2 1 15 15 C 1.52301 * 117.51914 * 292.46840 * 12 2 1 16 16 C 1.54161 * 121.22898 * 2.98900 * 15 12 2 17 17 C 1.55089 * 102.62328 * 165.47915 * 16 15 12 18 18 N 1.48593 * 103.48987 * 323.36944 * 17 16 15 19 19 C 1.48087 * 105.86917 * 38.75427 * 18 17 16 20 20 H 1.09007 * 109.46915 * 309.78517 * 1 2 3 21 21 H 1.08994 * 109.47468 * 69.78192 * 1 2 3 22 22 H 1.09002 * 109.47201 * 189.78989 * 1 2 3 23 23 H 0.97001 * 119.99711 * 179.97438 * 7 6 4 24 24 H 1.09003 * 117.51373 * 0.02562 * 14 12 2 25 25 H 1.09005 * 117.55429 * 214.85869 * 14 12 2 26 26 H 1.09004 * 110.69528 * 47.25311 * 16 15 12 27 27 H 1.08996 * 110.91261 * 283.81174 * 16 15 12 28 28 H 1.09004 * 110.64063 * 204.82068 * 17 16 15 29 29 H 1.09002 * 110.64653 * 81.91655 * 17 16 15 30 30 H 1.00904 * 110.99490 * 278.21267 * 18 17 16 31 31 H 1.09002 * 110.00609 * 94.11584 * 19 18 17 32 32 H 1.09001 * 110.00621 * 215.42637 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6216 -1.6099 -1.1320 6 6 1.7394 -0.2117 -2.4821 7 7 0.9720 0.8493 -2.6043 8 14 2.4328 -1.0432 -4.0045 9 1 1.4352 -2.0027 -4.5422 10 1 2.7374 -0.0169 -5.0337 11 1 3.6772 -1.7708 -3.6477 12 6 2.0400 -0.7213 1.2492 13 1 2.0083 -1.8101 1.2100 14 6 3.1963 -0.0744 2.0173 15 6 1.7879 -0.0582 2.5969 16 6 0.9874 1.2549 2.7043 17 6 0.6680 1.3342 4.2199 18 7 0.4280 -0.0826 4.5981 19 6 1.4211 -0.8779 3.8402 20 1 -0.3633 0.6577 0.7898 21 1 -0.3634 0.3551 -0.9643 22 1 -0.3634 -1.0127 0.1747 23 1 0.7662 1.2002 -3.4849 24 1 3.5931 0.8652 1.6326 25 1 3.9252 -0.7372 2.4836 26 1 0.0700 1.1957 2.1186 27 1 1.5923 2.1060 2.3917 28 1 -0.2248 1.9350 4.3935 29 1 1.5163 1.7406 4.7707 30 1 -0.5130 -0.3641 4.3669 31 1 2.3082 -1.0463 4.4508 32 1 0.9864 -1.8324 3.5435 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260258640.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:31 Heat of formation + Delta-G solvation = -0.099546 kcal Electronic energy + Delta-G solvation = -12629.964228 eV Core-core repulsion = 10589.921994 eV Total energy + Delta-G solvation = -2040.042234 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.51918 -36.85684 -34.87588 -31.84574 -30.14599 -27.53512 -26.76058 -23.86765 -22.70131 -21.44455 -19.49523 -18.37427 -17.21741 -16.54762 -16.15130 -15.35398 -15.00124 -14.51160 -14.15196 -13.56185 -13.39115 -13.27406 -12.87528 -12.76885 -12.58007 -12.25446 -12.20029 -12.13607 -11.67529 -11.39515 -11.02918 -10.60308 -10.44429 -10.08974 -9.56449 -8.08829 -6.22785 1.39134 1.40312 1.50924 2.41965 2.97123 3.18750 3.34139 3.65260 4.03342 4.11145 4.21792 4.43196 4.61953 4.67328 4.74263 4.81526 4.90894 4.97008 5.02011 5.04634 5.12085 5.30129 5.33068 5.45770 5.50825 5.60872 5.77340 5.96947 6.14647 6.41120 6.45241 6.88787 7.45118 8.94965 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.066067 B = 0.009192 C = 0.008696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.710889 B = 3045.346870 C = 3219.173999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.076 3.924 3 H -0.008 1.008 4 C -0.528 4.528 5 H 0.050 0.950 6 C 0.009 3.991 7 N -0.919 5.919 8 Si 0.953 3.047 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.269 1.269 12 C -0.122 4.122 13 H 0.086 0.914 14 C -0.162 4.162 15 C -0.154 4.154 16 C -0.130 4.130 17 C 0.052 3.948 18 N -0.673 5.673 19 C 0.084 3.916 20 H 0.038 0.962 21 H 0.050 0.950 22 H 0.023 0.977 23 H 0.260 0.740 24 H 0.076 0.924 25 H 0.103 0.897 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.342 0.658 31 H 0.081 0.919 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.175 -1.005 10.542 10.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.058 3.942 3 H 0.010 0.990 4 C -0.566 4.566 5 H 0.068 0.932 6 C -0.189 4.189 7 N -0.559 5.559 8 Si 0.778 3.222 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.193 1.193 12 C -0.140 4.140 13 H 0.104 0.896 14 C -0.199 4.199 15 C -0.155 4.155 16 C -0.168 4.168 17 C -0.077 4.077 18 N -0.299 5.299 19 C -0.046 4.046 20 H 0.057 0.943 21 H 0.069 0.931 22 H 0.042 0.958 23 H 0.069 0.931 24 H 0.094 0.906 25 H 0.122 0.878 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.157 0.843 31 H 0.100 0.900 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.094 -0.890 11.094 11.130 hybrid contribution 0.061 -0.170 -2.252 2.259 sum 0.155 -1.060 8.841 8.906 Atomic orbital electron populations 1.21776 0.98454 0.97920 1.00411 1.18106 0.92488 0.93229 0.90374 0.98956 1.21573 1.32397 1.10603 0.92037 0.93185 1.25747 0.95475 0.95795 1.01883 1.70031 1.37613 1.24389 1.23819 0.85626 0.78910 0.78266 0.79369 1.20203 1.20880 1.19328 1.22384 1.01960 0.97818 0.91856 0.89616 1.22958 0.90967 1.02311 1.03711 1.22419 0.98784 0.98659 0.95648 1.22799 0.99911 0.95469 0.98652 1.23092 1.02341 0.90396 0.91916 1.62878 1.07655 1.03429 1.55967 1.22113 0.96643 0.95574 0.90240 0.94314 0.93133 0.95827 0.93115 0.90592 0.87822 0.91058 0.92293 0.89220 0.90015 0.84259 0.90040 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.25 8.87 71.98 0.64 -5.61 16 2 C 0.08 3.87 1.89 -11.54 -0.02 3.85 16 3 H -0.01 -0.43 7.95 -2.39 -0.02 -0.45 16 4 C -0.53 -29.59 8.53 25.60 0.22 -29.37 16 5 H 0.05 2.77 7.75 -2.91 -0.02 2.75 16 6 C 0.01 0.51 5.31 84.65 0.45 0.96 16 7 N -0.92 -53.85 11.35 21.45 0.24 -53.60 16 8 Si 0.95 44.20 29.54 68.60 2.03 46.22 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 C -0.12 -5.05 4.86 -10.98 -0.05 -5.10 16 13 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 14 C -0.16 -5.83 9.92 30.41 0.30 -5.52 16 15 C -0.15 -5.17 2.37 -52.12 -0.12 -5.29 16 16 C -0.13 -4.17 6.01 31.70 0.19 -3.98 16 17 C 0.05 1.30 7.55 86.69 0.65 1.95 16 18 N -0.67 -17.07 7.52 -502.43 -3.78 -20.85 16 19 C 0.08 2.34 7.30 86.20 0.63 2.97 16 20 H 0.04 1.67 4.87 -2.38 -0.01 1.66 16 21 H 0.05 2.77 5.96 -2.39 -0.01 2.76 16 22 H 0.02 1.08 8.12 -2.39 -0.02 1.06 16 23 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 24 H 0.08 2.90 8.10 -2.39 -0.02 2.88 16 25 H 0.10 3.21 8.14 -2.38 -0.02 3.19 16 26 H 0.07 2.49 4.93 -2.38 -0.01 2.48 16 27 H 0.06 1.99 8.12 -2.39 -0.02 1.97 16 28 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.34 7.93 8.92 -89.69 -0.80 7.13 16 31 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -59.98 254.20 1.67 -58.31 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.30 Total: 15.05 kcal Atomic # 6 Polarization: -48.02 SS G_CDS: 2.88 Total: -45.14 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -3.54 Total: -74.45 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -59.98 1.67 -58.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260258640.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.214 kcal (2) G-P(sol) polarization free energy of solvation -59.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds