Wall clock time and date at job start Mon Mar 30 2020 02:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47257 * 2 1 4 4 C 1.50704 * 109.47207 * 240.00053 * 2 1 3 5 5 H 1.07996 * 119.99659 * 245.64702 * 4 2 1 6 6 C 1.37876 * 119.99838 * 65.64968 * 4 2 1 7 7 N 1.31517 * 119.99973 * 197.60827 * 6 4 2 8 8 Si 1.86802 * 120.00222 * 17.60491 * 6 4 2 9 9 H 1.48494 * 109.47267 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.47165 * 300.00361 * 8 6 4 11 11 H 1.48501 * 109.46839 * 60.00263 * 8 6 4 12 12 C 1.53003 * 109.47093 * 120.00133 * 2 1 3 13 13 H 1.08994 * 115.56030 * 34.24564 * 12 2 1 14 14 C 1.53150 * 117.51750 * 248.41091 * 12 2 1 15 15 C 1.52283 * 59.81667 * 252.56363 * 14 12 2 16 16 C 1.53631 * 121.47834 * 110.81990 * 15 14 12 17 17 C 1.54561 * 104.75347 * 143.72506 * 16 15 14 18 18 N 1.48618 * 104.64589 * 23.75201 * 17 16 15 19 19 C 1.48732 * 104.35899 * 320.92074 * 18 17 16 20 20 H 1.09001 * 109.46632 * 66.27961 * 1 2 3 21 21 H 1.09003 * 109.46856 * 186.27832 * 1 2 3 22 22 H 1.08998 * 109.47315 * 306.27899 * 1 2 3 23 23 H 0.96999 * 119.99962 * 354.88348 * 7 6 4 24 24 H 1.09003 * 117.51495 * 359.97438 * 14 12 2 25 25 H 1.08992 * 117.51732 * 145.13074 * 14 12 2 26 26 H 1.08996 * 110.38398 * 262.54102 * 16 15 14 27 27 H 1.08998 * 110.37806 * 24.79418 * 16 15 14 28 28 H 1.08994 * 110.40208 * 142.54839 * 17 16 15 29 29 H 1.09004 * 110.40437 * 264.96779 * 17 16 15 30 30 H 1.00901 * 111.00288 * 201.27873 * 18 17 16 31 31 H 1.09002 * 110.44318 * 280.09724 * 19 18 17 32 32 H 1.08999 * 110.44750 * 157.55759 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5760 -1.6386 -1.1340 6 6 1.7980 -0.1753 -2.4794 7 7 1.9147 -0.9296 -3.5504 8 14 1.3147 1.6210 -2.6502 9 1 1.1203 1.9469 -4.0859 10 1 0.0496 1.8656 -1.9120 11 1 2.3893 2.4783 -2.0886 12 6 2.0400 -0.7213 1.2493 13 1 1.4305 -1.5576 1.5912 14 6 2.7471 0.1222 2.3142 15 6 3.5480 -0.8279 1.4339 16 6 4.5246 -0.3044 0.3698 17 6 5.7013 -1.3065 0.3885 18 7 5.1195 -2.5589 0.9377 19 6 4.1960 -2.0980 2.0086 20 1 -0.3633 0.4134 -0.9409 21 1 -0.3633 -1.0215 0.1124 22 1 -0.3634 0.6081 0.8284 23 1 2.2371 -1.8408 -3.4691 24 1 2.8491 1.1907 2.1244 25 1 2.6024 -0.1592 3.3572 26 1 4.0489 -0.2960 -0.6108 27 1 4.8710 0.6954 0.6316 28 1 6.0752 -1.4723 -0.6218 29 1 6.4998 -0.9430 1.0354 30 1 5.8394 -3.1575 1.3139 31 1 4.7522 -1.8644 2.9165 32 1 3.4379 -2.8550 2.2095 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260258642.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:34 Heat of formation + Delta-G solvation = 18.711890 kcal Electronic energy + Delta-G solvation = -12876.757340 eV Core-core repulsion = 10837.530831 eV Total energy + Delta-G solvation = -2039.226509 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.93398 -35.29762 -32.92420 -30.53969 -28.81794 -25.76546 -24.64878 -22.13257 -21.06750 -19.44439 -17.85634 -17.30487 -15.92073 -14.75070 -14.00685 -13.83762 -13.38490 -13.13640 -12.43444 -12.16928 -11.81376 -11.71919 -11.40077 -10.97945 -10.64692 -10.48048 -10.36336 -10.21078 -9.78382 -9.54651 -9.19977 -9.02366 -8.41582 -8.16988 -8.03500 -6.31104 -3.88236 3.44825 3.47643 3.66204 4.37968 4.57823 4.83426 5.07940 5.34325 5.42260 5.57776 5.63068 5.67146 5.94479 6.05039 6.17922 6.25259 6.37171 6.45923 6.52091 6.53239 6.66666 6.74578 6.98670 7.08433 7.12892 7.32586 7.40373 7.65190 7.69851 8.30477 8.54943 9.10642 9.75828 11.07581 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.037125 B = 0.014095 C = 0.012070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.020970 B = 1986.038561 C = 2319.150340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 H 0.018 0.982 4 C -0.580 4.580 5 H 0.065 0.935 6 C 0.027 3.973 7 N -0.911 5.911 8 Si 1.042 2.958 9 H -0.289 1.289 10 H -0.276 1.276 11 H -0.286 1.286 12 C -0.091 4.091 13 H 0.087 0.913 14 C -0.189 4.189 15 C -0.118 4.118 16 C -0.106 4.106 17 C 0.041 3.959 18 N -0.659 5.659 19 C 0.075 3.925 20 H 0.051 0.949 21 H 0.041 0.959 22 H 0.020 0.980 23 H 0.267 0.733 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.125 0.875 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.026 0.974 30 H 0.325 0.675 31 H 0.032 0.968 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.946 1.528 9.990 10.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.022 3.978 3 H 0.036 0.964 4 C -0.617 4.617 5 H 0.084 0.916 6 C -0.177 4.177 7 N -0.546 5.546 8 Si 0.871 3.129 9 H -0.215 1.215 10 H -0.202 1.202 11 H -0.212 1.212 12 C -0.109 4.109 13 H 0.105 0.895 14 C -0.227 4.227 15 C -0.118 4.118 16 C -0.143 4.143 17 C -0.088 4.088 18 N -0.286 5.286 19 C -0.054 4.054 20 H 0.070 0.930 21 H 0.060 0.940 22 H 0.039 0.961 23 H 0.078 0.922 24 H 0.106 0.894 25 H 0.098 0.902 26 H 0.143 0.857 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.044 0.956 30 H 0.139 0.861 31 H 0.050 0.950 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.997 2.533 8.329 9.207 hybrid contribution 1.173 -0.935 2.010 2.508 sum 4.170 1.599 10.339 11.262 Atomic orbital electron populations 1.22196 0.99081 0.99646 0.99299 1.18653 0.91680 0.94915 0.92516 0.96396 1.21947 1.39152 1.10067 0.90574 0.91643 1.25679 0.94998 1.04662 0.92403 1.70834 1.42283 1.09865 1.31643 0.84082 0.77077 0.76027 0.75666 1.21513 1.20229 1.21231 1.22344 0.92317 0.99563 0.96663 0.89527 1.23100 1.06845 0.97161 0.95579 1.21367 0.94801 0.96181 0.99466 1.22184 0.93590 0.95559 1.03008 1.22903 0.96095 0.90355 0.99417 1.63661 1.19107 1.14906 1.30930 1.22276 0.95563 0.95747 0.91813 0.92991 0.94016 0.96125 0.92241 0.89438 0.90239 0.85749 0.93027 0.90610 0.95588 0.86068 0.95010 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.85 37.16 0.33 -2.89 16 2 C 0.04 0.97 1.67 -91.77 -0.15 0.82 16 3 H 0.02 0.43 6.55 -51.93 -0.34 0.09 16 4 C -0.58 -15.85 6.02 -34.44 -0.21 -16.05 16 5 H 0.07 1.98 7.70 -52.49 -0.40 1.58 16 6 C 0.03 0.77 5.29 -17.82 -0.09 0.67 16 7 N -0.91 -28.02 13.70 55.43 0.76 -27.26 16 8 Si 1.04 25.33 26.29 -169.99 -4.47 20.86 16 9 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 10 H -0.28 -6.26 5.76 56.52 0.33 -5.93 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 C -0.09 -1.87 4.96 -90.90 -0.45 -2.33 16 13 H 0.09 1.77 8.11 -51.93 -0.42 1.35 16 14 C -0.19 -3.33 9.94 -27.02 -0.27 -3.59 16 15 C -0.12 -2.25 2.36 -154.52 -0.36 -2.62 16 16 C -0.11 -2.12 6.26 -25.58 -0.16 -2.28 16 17 C 0.04 0.72 7.48 -2.05 -0.02 0.70 16 18 N -0.66 -11.39 7.63 -109.75 -0.84 -12.22 16 19 C 0.08 1.27 7.26 -2.43 -0.02 1.26 16 20 H 0.05 1.21 4.89 -51.93 -0.25 0.96 16 21 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.27 8.27 8.73 -40.82 -0.36 7.92 16 24 H 0.09 1.52 8.05 -51.93 -0.42 1.10 16 25 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.12 2.98 4.91 -51.93 -0.25 2.73 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.33 4.58 8.92 -39.29 -0.35 4.23 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 LS Contribution 250.66 15.07 3.78 3.78 Total: -1.00 -29.37 250.66 -7.23 -36.59 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.05 Total: 4.56 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: -1.40 Total: -26.31 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: -0.08 Total: -39.48 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -4.47 Total: 20.86 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.37 -7.23 -36.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260258642.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.306 kcal (2) G-P(sol) polarization free energy of solvation -29.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds