Wall clock time and date at job start Mon Mar 30 2020 02:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47257 * 2 1 4 4 C 1.50704 * 109.47207 * 240.00053 * 2 1 3 5 5 H 1.07996 * 119.99659 * 245.64702 * 4 2 1 6 6 C 1.37876 * 119.99838 * 65.64968 * 4 2 1 7 7 N 1.31517 * 119.99973 * 197.60827 * 6 4 2 8 8 Si 1.86802 * 120.00222 * 17.60491 * 6 4 2 9 9 H 1.48494 * 109.47267 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.47165 * 300.00361 * 8 6 4 11 11 H 1.48501 * 109.46839 * 60.00263 * 8 6 4 12 12 C 1.53003 * 109.47093 * 120.00133 * 2 1 3 13 13 H 1.08994 * 115.56030 * 34.24564 * 12 2 1 14 14 C 1.53150 * 117.51750 * 248.41091 * 12 2 1 15 15 C 1.52283 * 59.81667 * 252.56363 * 14 12 2 16 16 C 1.53631 * 121.47834 * 110.81990 * 15 14 12 17 17 C 1.54561 * 104.75347 * 143.72506 * 16 15 14 18 18 N 1.48618 * 104.64589 * 23.75201 * 17 16 15 19 19 C 1.48732 * 104.35899 * 320.92074 * 18 17 16 20 20 H 1.09001 * 109.46632 * 66.27961 * 1 2 3 21 21 H 1.09003 * 109.46856 * 186.27832 * 1 2 3 22 22 H 1.08998 * 109.47315 * 306.27899 * 1 2 3 23 23 H 0.96999 * 119.99962 * 354.88348 * 7 6 4 24 24 H 1.09003 * 117.51495 * 359.97438 * 14 12 2 25 25 H 1.08992 * 117.51732 * 145.13074 * 14 12 2 26 26 H 1.08996 * 110.38398 * 262.54102 * 16 15 14 27 27 H 1.08998 * 110.37806 * 24.79418 * 16 15 14 28 28 H 1.08994 * 110.40208 * 142.54839 * 17 16 15 29 29 H 1.09004 * 110.40437 * 264.96779 * 17 16 15 30 30 H 1.00901 * 111.00288 * 201.27873 * 18 17 16 31 31 H 1.09002 * 110.44318 * 280.09724 * 19 18 17 32 32 H 1.08999 * 110.44750 * 157.55759 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5760 -1.6386 -1.1340 6 6 1.7980 -0.1753 -2.4794 7 7 1.9147 -0.9296 -3.5504 8 14 1.3147 1.6210 -2.6502 9 1 1.1203 1.9469 -4.0859 10 1 0.0496 1.8656 -1.9120 11 1 2.3893 2.4783 -2.0886 12 6 2.0400 -0.7213 1.2493 13 1 1.4305 -1.5576 1.5912 14 6 2.7471 0.1222 2.3142 15 6 3.5480 -0.8279 1.4339 16 6 4.5246 -0.3044 0.3698 17 6 5.7013 -1.3065 0.3885 18 7 5.1195 -2.5589 0.9377 19 6 4.1960 -2.0980 2.0086 20 1 -0.3633 0.4134 -0.9409 21 1 -0.3633 -1.0215 0.1124 22 1 -0.3634 0.6081 0.8284 23 1 2.2371 -1.8408 -3.4691 24 1 2.8491 1.1907 2.1244 25 1 2.6024 -0.1592 3.3572 26 1 4.0489 -0.2960 -0.6108 27 1 4.8710 0.6954 0.6316 28 1 6.0752 -1.4723 -0.6218 29 1 6.4998 -0.9430 1.0354 30 1 5.8394 -3.1575 1.3139 31 1 4.7522 -1.8644 2.9165 32 1 3.4379 -2.8550 2.2095 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260258642.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:34 Heat of formation + Delta-G solvation = -1.696478 kcal Electronic energy + Delta-G solvation = -12877.642313 eV Core-core repulsion = 10837.530831 eV Total energy + Delta-G solvation = -2040.111482 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.42236 -36.89081 -34.86694 -32.46360 -30.27392 -27.20408 -26.64342 -23.87327 -22.49976 -21.08933 -19.56993 -19.32344 -17.30769 -16.27918 -15.73297 -15.46645 -15.24223 -14.65226 -14.08573 -13.94385 -13.45028 -13.25417 -13.11504 -12.45413 -12.31791 -12.29201 -12.08522 -11.81374 -11.58443 -11.33977 -11.01620 -10.82708 -10.21042 -10.08094 -9.46316 -8.57554 -6.14167 1.48272 1.54725 1.73418 2.55827 2.95137 3.18524 3.46328 3.66172 3.97721 4.11673 4.22109 4.31597 4.57178 4.64515 4.67573 4.78409 4.84907 4.88822 4.89819 5.00883 5.10696 5.19089 5.31541 5.39002 5.49851 5.63199 5.80787 5.91446 6.19721 6.25951 6.51802 6.78892 7.57559 8.79054 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.037125 B = 0.014095 C = 0.012070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.020970 B = 1986.038561 C = 2319.150340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.039 3.961 3 H 0.021 0.979 4 C -0.558 4.558 5 H 0.021 0.979 6 C -0.028 4.028 7 N -0.950 5.950 8 Si 1.079 2.921 9 H -0.297 1.297 10 H -0.245 1.245 11 H -0.267 1.267 12 C -0.123 4.123 13 H 0.085 0.915 14 C -0.153 4.153 15 C -0.130 4.130 16 C -0.111 4.111 17 C 0.047 3.953 18 N -0.682 5.682 19 C 0.080 3.920 20 H 0.038 0.962 21 H 0.035 0.965 22 H 0.054 0.946 23 H 0.248 0.752 24 H 0.093 0.907 25 H 0.112 0.888 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.344 0.656 31 H 0.063 0.937 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.103 2.994 12.710 13.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.020 3.980 3 H 0.039 0.961 4 C -0.596 4.596 5 H 0.039 0.961 6 C -0.224 4.224 7 N -0.588 5.588 8 Si 0.902 3.098 9 H -0.224 1.224 10 H -0.170 1.170 11 H -0.192 1.192 12 C -0.141 4.141 13 H 0.103 0.897 14 C -0.190 4.190 15 C -0.131 4.131 16 C -0.149 4.149 17 C -0.082 4.082 18 N -0.312 5.312 19 C -0.049 4.049 20 H 0.057 0.943 21 H 0.054 0.946 22 H 0.073 0.927 23 H 0.057 0.943 24 H 0.111 0.889 25 H 0.130 0.870 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.160 0.840 31 H 0.081 0.919 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.160 3.985 11.089 12.200 hybrid contribution 1.181 -1.471 1.202 2.237 sum 4.341 2.514 12.292 13.276 Atomic orbital electron populations 1.22102 0.97837 0.99986 0.99988 1.18601 0.92626 0.94659 0.92089 0.96140 1.22004 1.37031 1.08071 0.92530 0.96114 1.27015 0.95148 1.07961 0.92320 1.70980 1.45653 1.09294 1.32883 0.83635 0.78778 0.71717 0.75703 1.22405 1.16990 1.19198 1.22219 0.93667 1.00958 0.97257 0.89732 1.23139 1.02850 0.96868 0.96162 1.21532 0.93598 0.97921 1.00013 1.22065 0.94772 0.97298 1.00738 1.22808 0.95884 0.89912 0.99621 1.63575 1.20263 1.15400 1.31960 1.22264 0.95567 0.94517 0.92543 0.94300 0.94589 0.92665 0.94314 0.88853 0.87024 0.90618 0.91651 0.91941 0.92343 0.83969 0.91906 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.04 8.85 71.98 0.64 -5.40 16 2 C 0.04 1.80 1.67 -11.54 -0.02 1.78 16 3 H 0.02 0.94 6.55 -2.39 -0.02 0.92 16 4 C -0.56 -31.35 6.02 25.60 0.15 -31.19 16 5 H 0.02 1.32 7.70 -2.91 -0.02 1.30 16 6 C -0.03 -1.65 5.29 84.65 0.45 -1.20 16 7 N -0.95 -61.03 13.70 21.45 0.29 -60.73 16 8 Si 1.08 50.84 26.29 68.60 1.80 52.65 16 9 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 10 H -0.25 -10.32 5.76 99.48 0.57 -9.75 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 12 C -0.12 -4.86 4.96 -10.98 -0.05 -4.91 16 13 H 0.08 3.34 8.11 -2.39 -0.02 3.32 16 14 C -0.15 -4.75 9.94 30.41 0.30 -4.45 16 15 C -0.13 -4.70 2.36 -52.19 -0.12 -4.83 16 16 C -0.11 -4.33 6.26 31.34 0.20 -4.14 16 17 C 0.05 1.56 7.48 86.50 0.65 2.21 16 18 N -0.68 -22.63 7.63 -501.13 -3.82 -26.45 16 19 C 0.08 2.50 7.26 86.20 0.63 3.13 16 20 H 0.04 1.73 4.89 -2.39 -0.01 1.72 16 21 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.25 16.33 8.73 -92.71 -0.81 15.52 16 24 H 0.09 2.82 8.05 -2.39 -0.02 2.80 16 25 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 26 H 0.08 3.72 4.91 -2.39 -0.01 3.71 16 27 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.34 8.98 8.92 -89.69 -0.80 8.18 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 2.20 8.11 -2.39 -0.02 2.18 16 Total: -1.00 -65.63 250.66 1.21 -64.42 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.12 Total: 19.11 kcal Atomic # 6 Polarization: -51.81 SS G_CDS: 2.81 Total: -49.00 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -3.53 Total: -87.18 kcal Atomic # 14 Polarization: 50.84 SS G_CDS: 1.80 Total: 52.65 kcal Total: -65.63 1.21 -64.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260258642.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.725 kcal (2) G-P(sol) polarization free energy of solvation -65.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds