Wall clock time and date at job start Mon Mar 30 2020 02:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 N 1.46896 * 109.47211 * 120.00339 * 2 1 3 5 5 C 1.47173 * 111.00294 * 56.03844 * 4 2 1 6 6 C 1.53065 * 108.62547 * 53.47134 * 5 4 2 7 7 C 1.50370 * 109.72772 * 49.39689 * 6 5 4 8 8 C 1.34079 * 122.34877 * 343.76786 * 7 6 5 9 9 C 1.40072 * 118.64857 * 180.22583 * 8 7 6 10 10 H 1.07995 * 120.00502 * 15.79492 * 9 8 7 11 11 C 1.40313 * 119.99814 * 195.51479 * 9 8 7 12 12 N 1.30689 * 119.99755 * 11.74810 * 11 9 8 13 13 Si 1.86796 * 119.99914 * 191.75365 * 11 9 8 14 14 H 1.48493 * 109.47502 * 59.99760 * 13 11 9 15 15 H 1.48507 * 109.46958 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47207 * 299.99541 * 13 11 9 17 17 C 1.46819 * 111.00213 * 179.17677 * 4 2 1 18 18 H 1.08993 * 109.46834 * 300.00101 * 1 2 3 19 19 H 1.09003 * 109.47067 * 59.99968 * 1 2 3 20 20 H 1.08991 * 109.47187 * 179.97438 * 1 2 3 21 21 H 1.09006 * 109.46702 * 240.00106 * 2 1 3 22 22 H 1.08997 * 109.47272 * 188.00900 * 3 2 1 23 23 H 1.09005 * 109.46837 * 308.00084 * 3 2 1 24 24 H 1.08995 * 109.47240 * 68.00560 * 3 2 1 25 25 H 1.09003 * 109.61228 * 173.21590 * 5 4 2 26 26 H 1.09004 * 109.61448 * 293.73170 * 5 4 2 27 27 H 1.09000 * 109.43857 * 169.66834 * 6 5 4 28 28 H 1.08988 * 109.43810 * 289.58732 * 6 5 4 29 29 H 1.08008 * 118.82588 * 163.52375 * 7 6 5 30 30 H 0.97010 * 119.99692 * 180.02562 * 12 11 9 31 31 H 1.09004 * 109.34840 * 167.86793 * 17 4 2 32 32 H 1.09001 * 109.22822 * 48.24479 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.4719 -2.0560 1.2818 6 6 1.7697 -2.7828 -0.0321 7 6 3.2227 -2.6205 -0.3838 8 6 3.9994 -1.6888 0.1875 9 6 5.3421 -1.6030 -0.2020 10 1 5.6735 -2.0872 -1.1087 11 6 6.2556 -0.8830 0.5828 12 7 5.9179 -0.4887 1.7822 13 14 7.9541 -0.4880 -0.0867 14 1 7.8225 0.3261 -1.3216 15 1 8.7219 0.2748 0.9302 16 1 8.6687 -1.7515 -0.4004 17 6 3.4873 -0.7292 1.2235 18 1 -0.3633 0.5138 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 1.8933 -0.5139 -0.8901 22 1 3.1206 1.4458 -0.1432 23 1 1.5646 1.9959 -0.8099 24 1 1.7983 1.9133 0.9528 25 1 1.9404 -2.5891 2.1091 26 1 0.3941 -2.0086 1.4374 27 1 1.5367 -3.8418 0.0783 28 1 1.1585 -2.3579 -0.8282 29 1 3.6571 -3.2806 -1.1201 30 1 6.5493 0.0095 2.3247 31 1 3.8243 -1.0487 2.2096 32 1 3.8747 0.2680 1.0150 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260564968.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:00 Heat of formation + Delta-G solvation = 6.169196 kcal Electronic energy + Delta-G solvation = -13034.554413 eV Core-core repulsion = 10994.784012 eV Total energy + Delta-G solvation = -2039.770401 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.68720 -34.38148 -32.59328 -29.95226 -29.59647 -26.62111 -24.89580 -23.05165 -21.63139 -19.38313 -17.41127 -15.90650 -15.26584 -14.88397 -14.33122 -13.88484 -13.29591 -12.50898 -12.02235 -11.97707 -11.67427 -11.45264 -11.35805 -11.24896 -11.02291 -10.71625 -10.58511 -10.20544 -10.17432 -10.00982 -9.62752 -9.28202 -9.03101 -7.43373 -7.06832 -6.60045 -4.23422 3.00009 3.10256 3.14312 3.88887 4.01339 4.99636 5.29559 5.66537 5.69723 5.95959 6.10700 6.19585 6.31916 6.36389 6.42184 6.45525 6.49518 6.74953 6.76413 6.85431 6.98830 7.08660 7.16564 7.25805 7.39159 7.65315 7.93270 8.18719 8.21266 8.39216 8.68935 9.11191 9.33131 10.29673 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.046506 B = 0.012399 C = 0.011181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.924945 B = 2257.742534 C = 2503.549742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.070 3.930 3 C -0.141 4.141 4 N -0.536 5.536 5 C 0.056 3.944 6 C -0.073 4.073 7 C -0.412 4.412 8 C 0.055 3.945 9 C -0.465 4.465 10 H 0.067 0.933 11 C 0.072 3.928 12 N -0.815 5.815 13 Si 0.907 3.093 14 H -0.267 1.267 15 H -0.279 1.279 16 H -0.268 1.268 17 C 0.109 3.891 18 H 0.054 0.946 19 H 0.047 0.953 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.058 0.942 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.033 0.967 28 H 0.030 0.970 29 H 0.068 0.932 30 H 0.279 0.721 31 H 0.091 0.909 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.687 2.664 -0.695 5.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.039 4.039 3 C -0.198 4.198 4 N -0.260 5.260 5 C -0.072 4.072 6 C -0.112 4.112 7 C -0.434 4.434 8 C 0.052 3.948 9 C -0.496 4.496 10 H 0.086 0.914 11 C -0.143 4.143 12 N -0.443 5.443 13 Si 0.732 3.268 14 H -0.191 1.191 15 H -0.204 1.204 16 H -0.192 1.192 17 C -0.017 4.017 18 H 0.073 0.927 19 H 0.066 0.934 20 H 0.072 0.928 21 H 0.071 0.929 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.751 3.089 -0.046 5.667 hybrid contribution 1.269 -0.407 -1.099 1.727 sum -3.483 2.682 -1.145 4.542 Atomic orbital electron populations 1.21882 0.96035 1.01304 1.00754 1.21538 0.93940 0.94645 0.93793 1.21828 1.01398 0.95825 1.00786 1.63079 1.10455 1.15578 1.36889 1.22079 0.97977 0.89595 0.97593 1.20381 0.96922 0.97559 0.96313 1.21382 0.94616 1.10274 1.17122 1.18787 0.93570 0.91258 0.91233 1.19434 0.93748 1.28635 1.07817 0.91435 1.25997 1.00624 0.93631 0.94047 1.69733 1.36714 1.30140 1.07714 0.86387 0.81609 0.79300 0.79472 1.19136 1.20448 1.19246 1.21131 0.82222 0.99100 0.99278 0.92693 0.93402 0.92841 0.92897 0.92316 0.93487 0.92601 0.91858 0.92659 0.94791 0.95138 0.91357 0.91027 0.89158 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.67 37.16 0.32 -2.01 16 2 C 0.07 1.38 1.96 -67.71 -0.13 1.25 16 3 C -0.14 -2.58 8.78 37.16 0.33 -2.26 16 4 N -0.54 -11.75 4.88 -228.17 -1.11 -12.86 16 5 C 0.06 1.17 5.42 -3.64 -0.02 1.15 16 6 C -0.07 -1.62 5.46 -28.01 -0.15 -1.78 16 7 C -0.41 -10.73 9.00 -35.93 -0.32 -11.06 16 8 C 0.05 1.48 5.14 -105.63 -0.54 0.94 16 9 C -0.47 -12.86 8.91 -38.11 -0.34 -13.20 16 10 H 0.07 1.87 7.85 -52.49 -0.41 1.46 16 11 C 0.07 1.85 5.24 -17.26 -0.09 1.76 16 12 N -0.82 -20.96 10.11 55.57 0.56 -20.40 16 13 Si 0.91 19.41 29.58 -169.99 -5.03 14.39 16 14 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 15 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 16 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 17 C 0.11 2.72 3.74 -5.26 -0.02 2.70 16 18 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 19 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 20 H 0.05 0.87 5.86 -51.93 -0.30 0.56 16 21 H 0.05 1.19 5.75 -51.93 -0.30 0.89 16 22 H 0.06 1.19 6.61 -51.93 -0.34 0.84 16 23 H 0.05 0.74 8.13 -51.93 -0.42 0.31 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.06 1.36 8.07 -51.93 -0.42 0.94 16 26 H 0.06 1.01 6.63 -51.93 -0.34 0.67 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.03 0.65 6.29 -51.94 -0.33 0.32 16 29 H 0.07 1.85 7.98 -52.48 -0.42 1.43 16 30 H 0.28 6.61 8.29 -40.82 -0.34 6.27 16 31 H 0.09 2.42 7.09 -51.93 -0.37 2.06 16 32 H 0.08 2.01 5.14 -51.93 -0.27 1.74 16 LS Contribution 244.46 15.07 3.68 3.68 Total: -1.00 -27.00 244.46 -7.62 -34.62 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -4.75 Total: 3.08 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: -0.97 Total: -22.50 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: -0.55 Total: -33.26 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -27.00 -7.62 -34.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260564968.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.784 kcal (2) G-P(sol) polarization free energy of solvation -26.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds