Wall clock time and date at job start Mon Mar 30 2020 02:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 N 1.46896 * 109.47211 * 120.00339 * 2 1 3 5 5 C 1.47173 * 111.00294 * 56.03844 * 4 2 1 6 6 C 1.53065 * 108.62547 * 53.47134 * 5 4 2 7 7 C 1.50370 * 109.72772 * 49.39689 * 6 5 4 8 8 C 1.34079 * 122.34877 * 343.76786 * 7 6 5 9 9 C 1.40072 * 118.64857 * 180.22583 * 8 7 6 10 10 H 1.07995 * 120.00502 * 15.79492 * 9 8 7 11 11 C 1.40313 * 119.99814 * 195.51479 * 9 8 7 12 12 N 1.30689 * 119.99755 * 11.74810 * 11 9 8 13 13 Si 1.86796 * 119.99914 * 191.75365 * 11 9 8 14 14 H 1.48493 * 109.47502 * 59.99760 * 13 11 9 15 15 H 1.48507 * 109.46958 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47207 * 299.99541 * 13 11 9 17 17 C 1.46819 * 111.00213 * 179.17677 * 4 2 1 18 18 H 1.08993 * 109.46834 * 300.00101 * 1 2 3 19 19 H 1.09003 * 109.47067 * 59.99968 * 1 2 3 20 20 H 1.08991 * 109.47187 * 179.97438 * 1 2 3 21 21 H 1.09006 * 109.46702 * 240.00106 * 2 1 3 22 22 H 1.08997 * 109.47272 * 188.00900 * 3 2 1 23 23 H 1.09005 * 109.46837 * 308.00084 * 3 2 1 24 24 H 1.08995 * 109.47240 * 68.00560 * 3 2 1 25 25 H 1.09003 * 109.61228 * 173.21590 * 5 4 2 26 26 H 1.09004 * 109.61448 * 293.73170 * 5 4 2 27 27 H 1.09000 * 109.43857 * 169.66834 * 6 5 4 28 28 H 1.08988 * 109.43810 * 289.58732 * 6 5 4 29 29 H 1.08008 * 118.82588 * 163.52375 * 7 6 5 30 30 H 0.97010 * 119.99692 * 180.02562 * 12 11 9 31 31 H 1.09004 * 109.34840 * 167.86793 * 17 4 2 32 32 H 1.09001 * 109.22822 * 48.24479 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.4719 -2.0560 1.2818 6 6 1.7697 -2.7828 -0.0321 7 6 3.2227 -2.6205 -0.3838 8 6 3.9994 -1.6888 0.1875 9 6 5.3421 -1.6030 -0.2020 10 1 5.6735 -2.0872 -1.1087 11 6 6.2556 -0.8830 0.5828 12 7 5.9179 -0.4887 1.7822 13 14 7.9541 -0.4880 -0.0867 14 1 7.8225 0.3261 -1.3216 15 1 8.7219 0.2748 0.9302 16 1 8.6687 -1.7515 -0.4004 17 6 3.4873 -0.7292 1.2235 18 1 -0.3633 0.5138 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 1.8933 -0.5139 -0.8901 22 1 3.1206 1.4458 -0.1432 23 1 1.5646 1.9959 -0.8099 24 1 1.7983 1.9133 0.9528 25 1 1.9404 -2.5891 2.1091 26 1 0.3941 -2.0086 1.4374 27 1 1.5367 -3.8418 0.0783 28 1 1.1585 -2.3579 -0.8282 29 1 3.6571 -3.2806 -1.1201 30 1 6.5493 0.0095 2.3247 31 1 3.8243 -1.0487 2.2096 32 1 3.8747 0.2680 1.0150 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260564968.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:00 Heat of formation + Delta-G solvation = -10.369062 kcal Electronic energy + Delta-G solvation = -13035.271566 eV Core-core repulsion = 10994.784012 eV Total energy + Delta-G solvation = -2040.487553 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.46681 -36.28761 -34.34647 -31.85381 -31.35927 -28.19150 -26.75916 -24.85171 -23.46170 -21.10966 -19.34577 -17.82596 -17.10312 -16.62852 -15.99923 -15.59955 -15.11385 -14.29526 -13.85385 -13.65196 -13.20643 -13.05403 -12.98194 -12.84591 -12.74775 -12.49201 -12.31259 -12.11114 -11.79519 -11.71689 -11.40171 -11.13254 -10.95574 -9.48590 -8.89384 -8.56505 -6.33548 1.24427 1.34879 1.45645 1.92960 2.20292 3.19140 3.35274 4.17484 4.23770 4.31499 4.56324 4.66199 4.68528 4.80016 4.83003 4.87871 5.01719 5.04216 5.13994 5.21908 5.23179 5.27588 5.38383 5.46637 5.50630 5.66440 5.89895 6.22069 6.33606 6.49659 6.65059 7.06125 7.28282 8.33391 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.046506 B = 0.012399 C = 0.011181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.924945 B = 2257.742534 C = 2503.549742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.065 3.935 3 C -0.135 4.135 4 N -0.535 5.535 5 C 0.058 3.942 6 C -0.068 4.068 7 C -0.426 4.426 8 C 0.032 3.968 9 C -0.509 4.509 10 H 0.051 0.949 11 C 0.037 3.963 12 N -0.829 5.829 13 Si 0.977 3.023 14 H -0.264 1.264 15 H -0.260 1.260 16 H -0.267 1.267 17 C 0.130 3.870 18 H 0.066 0.934 19 H 0.070 0.930 20 H 0.056 0.944 21 H 0.023 0.977 22 H 0.029 0.971 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.092 0.908 27 H 0.047 0.953 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.289 0.711 31 H 0.067 0.933 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.456 3.647 -0.545 6.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.044 4.044 3 C -0.193 4.193 4 N -0.259 5.259 5 C -0.070 4.070 6 C -0.107 4.107 7 C -0.448 4.448 8 C 0.029 3.971 9 C -0.539 4.539 10 H 0.070 0.930 11 C -0.177 4.177 12 N -0.456 5.456 13 Si 0.798 3.202 14 H -0.188 1.188 15 H -0.184 1.184 16 H -0.192 1.192 17 C 0.003 3.997 18 H 0.085 0.915 19 H 0.089 0.911 20 H 0.075 0.925 21 H 0.041 0.959 22 H 0.048 0.952 23 H 0.094 0.906 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.110 0.890 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.548 4.066 0.113 6.879 hybrid contribution 1.499 -0.735 -1.151 2.027 sum -4.049 3.331 -1.038 5.345 Atomic orbital electron populations 1.21814 0.92643 1.02095 1.02528 1.21667 0.96591 0.94672 0.91427 1.21784 0.99694 0.95447 1.02367 1.63097 1.08337 1.16354 1.38080 1.22147 0.99888 0.88677 0.96319 1.20356 0.94230 0.98725 0.97356 1.21615 0.97009 1.09623 1.16557 1.19142 0.93863 0.91992 0.92122 1.19639 0.95088 1.30878 1.08328 0.93036 1.26742 1.04311 0.92665 0.93991 1.69781 1.38251 1.29373 1.08219 0.85334 0.76564 0.79122 0.79161 1.18831 1.18425 1.19177 1.20730 0.84358 0.97557 0.97099 0.91493 0.91084 0.92541 0.95944 0.95222 0.90570 0.91813 0.92987 0.89028 0.93483 0.94034 0.93764 0.89984 0.91509 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 8.67 71.98 0.62 -3.28 16 2 C 0.06 2.49 1.96 44.92 0.09 2.58 16 3 C -0.14 -4.78 8.78 71.98 0.63 -4.15 16 4 N -0.54 -23.04 4.88 -875.79 -4.27 -27.32 16 5 C 0.06 2.33 5.42 86.27 0.47 2.80 16 6 C -0.07 -2.98 5.46 29.77 0.16 -2.81 16 7 C -0.43 -22.85 9.00 24.63 0.22 -22.63 16 8 C 0.03 1.79 5.14 -20.52 -0.11 1.68 16 9 C -0.51 -29.18 8.91 23.22 0.21 -28.98 16 10 H 0.05 3.01 7.85 -2.91 -0.02 2.98 16 11 C 0.04 1.93 5.24 85.37 0.45 2.38 16 12 N -0.83 -42.99 10.11 21.89 0.22 -42.77 16 13 Si 0.98 39.80 29.58 68.60 2.03 41.82 16 14 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 15 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 16 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 17 C 0.13 6.61 3.74 85.42 0.32 6.93 16 18 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 19 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 20 H 0.06 1.62 5.86 -2.39 -0.01 1.60 16 21 H 0.02 1.01 5.75 -2.38 -0.01 0.99 16 22 H 0.03 1.19 6.61 -2.39 -0.02 1.17 16 23 H 0.08 2.21 8.13 -2.38 -0.02 2.19 16 24 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.05 2.20 8.07 -2.39 -0.02 2.18 16 26 H 0.09 3.05 6.63 -2.39 -0.02 3.04 16 27 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.04 1.72 6.29 -2.39 -0.02 1.70 16 29 H 0.04 2.51 7.98 -2.91 -0.02 2.49 16 30 H 0.29 13.57 8.29 -92.70 -0.77 12.80 16 31 H 0.07 3.68 7.09 -2.39 -0.02 3.67 16 32 H 0.07 3.45 5.14 -2.39 -0.01 3.44 16 Total: -1.00 -59.13 244.46 2.13 -57.00 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 1.09 Total: 16.75 kcal Atomic # 6 Polarization: -48.55 SS G_CDS: 3.06 Total: -45.48 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: -4.05 Total: -70.09 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.82 kcal Total: -59.13 2.13 -57.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260564968.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.630 kcal (2) G-P(sol) polarization free energy of solvation -59.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds