Wall clock time and date at job start Mon Mar 30 2020 01:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00371 * 2 1 4 4 H 1.48496 * 109.47458 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47101 * 300.00206 * 3 2 1 6 6 H 1.48508 * 109.46954 * 59.99758 * 3 2 1 7 7 C 1.37882 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99509 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99890 * 0.02562 * 7 2 1 10 10 H 1.08989 * 110.41039 * 57.73033 * 9 7 2 11 11 C 1.53989 * 110.35327 * 179.97438 * 9 7 2 12 12 C 1.53613 * 106.01870 * 148.32520 * 11 9 7 13 13 H 1.08997 * 111.00290 * 220.40169 * 12 11 9 14 14 C 1.54222 * 109.20114 * 96.61366 * 12 11 9 15 15 C 1.54867 * 104.24927 * 221.11344 * 14 12 11 16 16 H 1.08999 * 110.75913 * 279.73203 * 15 14 12 17 17 N 1.46900 * 110.75604 * 156.35738 * 15 14 12 18 18 C 1.54869 * 102.74428 * 38.04817 * 15 14 12 19 19 C 1.54225 * 104.24908 * 321.95480 * 18 15 14 20 20 H 1.08998 * 111.00523 * 262.65560 * 19 18 15 21 21 C 1.53610 * 109.20286 * 138.88239 * 19 18 15 22 22 H 0.97005 * 119.99786 * 0.02562 * 1 2 3 23 23 H 1.09002 * 110.15637 * 29.16527 * 11 9 7 24 24 H 1.09004 * 110.14996 * 267.48025 * 11 9 7 25 25 H 1.08996 * 110.47740 * 339.80896 * 14 12 11 26 26 H 1.09002 * 110.47393 * 102.42364 * 14 12 11 27 27 H 1.00905 * 111.00348 * 66.68124 * 17 15 14 28 28 H 1.00903 * 111.00058 * 190.62943 * 17 15 14 29 29 H 1.09005 * 110.47614 * 203.26434 * 18 15 14 30 30 H 1.08995 * 110.59031 * 80.70624 * 18 15 14 31 31 H 1.09000 * 110.15606 * 22.46943 * 21 19 18 32 32 H 1.09000 * 110.15311 * 144.22398 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.5889 -2.5558 -0.8634 11 6 2.2333 -3.6849 0.0005 12 6 1.5362 -4.8130 0.7758 13 1 2.2409 -5.3364 1.4220 14 6 0.8542 -5.7692 -0.2237 15 6 -0.5081 -6.1001 0.4342 16 1 -0.3914 -6.8674 1.1995 17 7 -1.4875 -6.5172 -0.5781 18 6 -0.9177 -4.7486 1.0700 19 6 0.4062 -4.1621 1.6008 20 1 0.5275 -4.3707 2.6637 21 6 0.4454 -2.6551 1.3058 22 1 -0.4850 0.8401 -0.0004 23 1 3.1610 -3.4041 0.4992 24 1 2.4383 -4.0028 -1.0218 25 1 0.7042 -5.2742 -1.1831 26 1 1.4469 -6.6753 -0.3496 27 1 -1.2243 -7.3976 -0.9949 28 1 -2.4154 -6.5665 -0.1849 29 1 -1.6190 -4.9094 1.8888 30 1 -1.3536 -4.0887 0.3200 31 1 -0.5662 -2.2724 1.1705 32 1 0.9421 -2.1260 2.1191 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260774025.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:31 Heat of formation + Delta-G solvation = -30.102313 kcal Electronic energy + Delta-G solvation = -12754.695542 eV Core-core repulsion = 10713.352290 eV Total energy + Delta-G solvation = -2041.343251 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.99710 -34.70965 -32.42875 -29.97654 -29.64332 -26.13471 -24.50354 -23.37160 -19.87304 -18.90564 -18.15207 -16.46030 -15.46167 -15.03707 -14.51127 -14.24371 -13.47508 -13.17593 -12.81136 -11.94523 -11.43720 -11.21955 -10.91194 -10.81728 -10.51293 -10.38729 -10.20074 -9.97927 -9.63581 -9.61444 -9.39393 -8.97738 -8.60954 -8.44327 -8.27319 -5.91832 -3.93646 3.34538 3.42449 3.46510 4.51354 4.72574 5.01326 5.26869 5.41060 5.48242 5.76305 5.91360 6.06189 6.12378 6.23715 6.34330 6.40387 6.59380 6.65629 6.75670 6.89965 7.00475 7.12536 7.22383 7.40374 7.43357 7.53287 7.62723 7.83724 8.02599 8.15870 8.58271 9.10146 9.69670 11.17924 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.062838 B = 0.009703 C = 0.009210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.483313 B = 2885.118643 C = 3039.509563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.886 3.114 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.051 3.949 10 H 0.029 0.971 11 C -0.110 4.110 12 C -0.091 4.091 13 H 0.058 0.942 14 C -0.105 4.105 15 C 0.079 3.921 16 H 0.033 0.967 17 N -0.842 5.842 18 C -0.109 4.109 19 C -0.096 4.096 20 H 0.055 0.945 21 C -0.089 4.089 22 H 0.257 0.743 23 H 0.049 0.951 24 H 0.044 0.956 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.334 0.666 28 H 0.336 0.664 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.020 -10.573 1.859 10.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.715 3.285 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.033 3.967 10 H 0.047 0.953 11 C -0.147 4.147 12 C -0.110 4.110 13 H 0.076 0.924 14 C -0.143 4.143 15 C -0.032 4.032 16 H 0.051 0.949 17 N -0.371 5.371 18 C -0.146 4.146 19 C -0.115 4.115 20 H 0.074 0.926 21 C -0.127 4.127 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.097 0.903 26 H 0.067 0.933 27 H 0.146 0.854 28 H 0.149 0.851 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.961 -9.774 1.478 9.932 hybrid contribution 0.249 0.089 0.710 0.758 sum -0.713 -9.685 2.189 9.955 Atomic orbital electron populations 1.69987 1.05815 1.26105 1.50897 1.24989 0.94823 0.98910 0.95332 0.86628 0.80205 0.84241 0.77461 1.19872 1.21139 1.21171 1.21276 0.92744 0.90711 1.50237 0.92769 1.19220 0.92402 0.91354 0.93721 0.95321 1.22269 0.99273 0.95726 0.97468 1.22163 0.96573 0.96224 0.96041 0.92353 1.22464 0.93856 0.98237 0.99781 1.22417 0.92817 0.96186 0.91758 0.94948 1.58717 1.05170 1.36964 1.36220 1.22517 0.97485 0.95338 0.99296 1.22287 0.93170 0.98681 0.97331 0.92603 1.22106 1.01242 0.89761 0.99629 0.93284 0.93205 0.93721 0.90323 0.93342 0.85433 0.85144 0.93339 0.90047 0.92058 0.93705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 12.42 55.43 0.69 -25.47 16 2 C 0.06 1.73 5.34 -17.82 -0.10 1.63 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.51 -14.42 8.36 -34.44 -0.29 -14.71 16 8 H 0.05 1.51 7.62 -52.48 -0.40 1.11 16 9 C 0.05 1.32 2.79 -90.65 -0.25 1.06 16 10 H 0.03 0.81 8.14 -51.94 -0.42 0.39 16 11 C -0.11 -2.36 5.68 -25.90 -0.15 -2.51 16 12 C -0.09 -1.68 3.71 -88.98 -0.33 -2.01 16 13 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 14 C -0.11 -1.74 5.92 -25.11 -0.15 -1.89 16 15 C 0.08 1.20 4.04 -65.74 -0.27 0.94 16 16 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 17 N -0.84 -11.33 9.36 -3.00 -0.03 -11.36 16 18 C -0.11 -1.90 5.88 -25.10 -0.15 -2.05 16 19 C -0.10 -1.85 3.71 -88.98 -0.33 -2.18 16 20 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 21 C -0.09 -2.13 4.98 -25.80 -0.13 -2.26 16 22 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 23 H 0.05 1.08 7.78 -51.93 -0.40 0.67 16 24 H 0.04 0.92 7.56 -51.93 -0.39 0.53 16 25 H 0.08 1.45 7.55 -51.93 -0.39 1.06 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.33 3.75 9.08 -39.29 -0.36 3.40 16 28 H 0.34 3.95 9.03 -39.29 -0.35 3.60 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.63 7.55 -51.93 -0.39 1.24 16 31 H 0.06 1.57 7.21 -51.93 -0.37 1.20 16 32 H 0.04 1.12 7.90 -51.93 -0.41 0.71 16 LS Contribution 251.50 15.07 3.79 3.79 Total: -1.00 -29.16 251.50 -7.85 -37.01 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -5.15 Total: 3.25 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -2.13 Total: -23.96 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.66 Total: -36.82 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.16 -7.85 -37.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260774025.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.911 kcal (2) G-P(sol) polarization free energy of solvation -29.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds