Wall clock time and date at job start Mon Mar 30 2020 01:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00371 * 2 1 4 4 H 1.48496 * 109.47458 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47101 * 300.00206 * 3 2 1 6 6 H 1.48508 * 109.46954 * 59.99758 * 3 2 1 7 7 C 1.37882 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99509 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99890 * 0.02562 * 7 2 1 10 10 H 1.08989 * 110.41039 * 57.73033 * 9 7 2 11 11 C 1.53989 * 110.35327 * 179.97438 * 9 7 2 12 12 C 1.53613 * 106.01870 * 148.32520 * 11 9 7 13 13 H 1.08997 * 111.00290 * 220.40169 * 12 11 9 14 14 C 1.54222 * 109.20114 * 96.61366 * 12 11 9 15 15 C 1.54867 * 104.24927 * 221.11344 * 14 12 11 16 16 H 1.08999 * 110.75913 * 279.73203 * 15 14 12 17 17 N 1.46900 * 110.75604 * 156.35738 * 15 14 12 18 18 C 1.54869 * 102.74428 * 38.04817 * 15 14 12 19 19 C 1.54225 * 104.24908 * 321.95480 * 18 15 14 20 20 H 1.08998 * 111.00523 * 262.65560 * 19 18 15 21 21 C 1.53610 * 109.20286 * 138.88239 * 19 18 15 22 22 H 0.97005 * 119.99786 * 0.02562 * 1 2 3 23 23 H 1.09002 * 110.15637 * 29.16527 * 11 9 7 24 24 H 1.09004 * 110.14996 * 267.48025 * 11 9 7 25 25 H 1.08996 * 110.47740 * 339.80896 * 14 12 11 26 26 H 1.09002 * 110.47393 * 102.42364 * 14 12 11 27 27 H 1.00905 * 111.00348 * 66.68124 * 17 15 14 28 28 H 1.00903 * 111.00058 * 190.62943 * 17 15 14 29 29 H 1.09005 * 110.47614 * 203.26434 * 18 15 14 30 30 H 1.08995 * 110.59031 * 80.70624 * 18 15 14 31 31 H 1.09000 * 110.15606 * 22.46943 * 21 19 18 32 32 H 1.09000 * 110.15311 * 144.22398 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.5889 -2.5558 -0.8634 11 6 2.2333 -3.6849 0.0005 12 6 1.5362 -4.8130 0.7758 13 1 2.2409 -5.3364 1.4220 14 6 0.8542 -5.7692 -0.2237 15 6 -0.5081 -6.1001 0.4342 16 1 -0.3914 -6.8674 1.1995 17 7 -1.4875 -6.5172 -0.5781 18 6 -0.9177 -4.7486 1.0700 19 6 0.4062 -4.1621 1.6008 20 1 0.5275 -4.3707 2.6637 21 6 0.4454 -2.6551 1.3058 22 1 -0.4850 0.8401 -0.0004 23 1 3.1610 -3.4041 0.4992 24 1 2.4383 -4.0028 -1.0218 25 1 0.7042 -5.2742 -1.1831 26 1 1.4469 -6.6753 -0.3496 27 1 -1.2243 -7.3976 -0.9949 28 1 -2.4154 -6.5665 -0.1849 29 1 -1.6190 -4.9094 1.8888 30 1 -1.3536 -4.0887 0.3200 31 1 -0.5662 -2.2724 1.1705 32 1 0.9421 -2.1260 2.1191 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260774025.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:31 Heat of formation + Delta-G solvation = -49.089753 kcal Electronic energy + Delta-G solvation = -12755.518899 eV Core-core repulsion = 10713.352290 eV Total energy + Delta-G solvation = -2042.166609 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.54050 -36.29882 -34.32339 -31.60922 -31.23498 -27.90803 -26.12147 -25.24872 -21.16464 -20.83511 -19.70683 -18.48937 -16.98785 -16.40286 -16.16927 -15.69216 -15.28338 -14.86022 -14.32047 -13.85303 -13.24657 -12.94897 -12.78381 -12.45541 -12.40100 -11.89699 -11.73898 -11.59222 -11.35191 -11.29396 -11.12707 -10.86731 -10.64480 -10.43784 -9.51550 -8.10943 -6.20774 1.38803 1.39862 1.51988 2.43417 3.18994 3.58128 3.65093 3.85831 4.15455 4.39634 4.43676 4.59283 4.70006 4.76141 4.84189 4.91617 5.07277 5.12850 5.19184 5.28996 5.33679 5.40895 5.49236 5.57953 5.67875 5.76025 6.01784 6.03036 6.38973 6.42812 6.72616 6.92006 7.46418 8.98318 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.062838 B = 0.009703 C = 0.009210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.483313 B = 2885.118643 C = 3039.509563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.008 3.992 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.533 4.533 8 H 0.052 0.948 9 C 0.044 3.956 10 H -0.012 1.012 11 C -0.105 4.105 12 C -0.086 4.086 13 H 0.087 0.913 14 C -0.103 4.103 15 C 0.091 3.909 16 H 0.061 0.939 17 N -0.853 5.853 18 C -0.107 4.107 19 C -0.093 4.093 20 H 0.078 0.922 21 C -0.080 4.080 22 H 0.259 0.741 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.350 0.650 28 H 0.347 0.653 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.030 0.970 32 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.330 -12.165 2.583 12.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.190 4.190 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.572 4.572 8 H 0.070 0.930 9 C 0.025 3.975 10 H 0.006 0.994 11 C -0.142 4.142 12 C -0.104 4.104 13 H 0.105 0.895 14 C -0.141 4.141 15 C -0.020 4.020 16 H 0.078 0.922 17 N -0.385 5.385 18 C -0.145 4.145 19 C -0.112 4.112 20 H 0.096 0.904 21 C -0.118 4.118 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.097 0.903 27 H 0.163 0.837 28 H 0.161 0.839 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.269 -11.386 2.197 11.599 hybrid contribution 0.011 0.620 0.448 0.765 sum -0.258 -10.766 2.645 11.089 Atomic orbital electron populations 1.70126 1.07296 1.26982 1.51578 1.25816 0.95698 1.02544 0.94949 0.85569 0.79155 0.79738 0.77599 1.19000 1.20652 1.20549 1.21666 0.92897 0.92296 1.50298 0.92992 1.19186 0.92863 0.92497 0.92928 0.99361 1.22163 0.98280 0.95360 0.98423 1.22161 0.96466 0.95521 0.96282 0.89471 1.22412 0.95137 0.98623 0.97915 1.22268 0.92112 0.95280 0.92361 0.92169 1.58600 1.05556 1.38243 1.36123 1.22422 0.96720 0.96189 0.99158 1.22250 0.94905 0.95027 0.99002 0.90365 1.21879 0.98676 0.93328 0.97934 0.93226 0.93439 0.93409 0.93051 0.90337 0.83671 0.83908 0.91322 0.93706 0.95109 0.95802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.99 12.42 21.45 0.27 -55.72 16 2 C 0.01 0.48 5.34 84.66 0.45 0.93 16 3 Si 0.95 45.27 29.54 68.60 2.03 47.30 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 7 C -0.53 -30.92 8.36 25.60 0.21 -30.71 16 8 H 0.05 2.95 7.62 -2.91 -0.02 2.93 16 9 C 0.04 2.32 2.79 -10.81 -0.03 2.29 16 10 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 11 C -0.10 -4.48 5.68 31.13 0.18 -4.31 16 12 C -0.09 -2.96 3.71 -9.73 -0.04 -3.00 16 13 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 14 C -0.10 -3.14 5.92 31.65 0.19 -2.95 16 15 C 0.09 2.49 4.04 46.19 0.19 2.67 16 16 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 17 N -0.85 -20.88 9.36 -163.41 -1.53 -22.41 16 18 C -0.11 -3.61 5.88 31.65 0.19 -3.42 16 19 C -0.09 -3.47 3.71 -9.73 -0.04 -3.51 16 20 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 21 C -0.08 -3.93 4.98 31.19 0.16 -3.78 16 22 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 23 H 0.05 2.02 7.78 -2.39 -0.02 2.01 16 24 H 0.05 1.97 7.56 -2.38 -0.02 1.95 16 25 H 0.05 1.85 7.55 -2.39 -0.02 1.84 16 26 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.35 6.77 9.08 -89.69 -0.81 5.96 16 28 H 0.35 7.31 9.03 -89.69 -0.81 6.50 16 29 H 0.07 2.01 8.14 -2.38 -0.02 2.00 16 30 H 0.04 1.84 7.55 -2.39 -0.02 1.82 16 31 H 0.03 1.65 7.21 -2.39 -0.02 1.63 16 32 H 0.02 1.22 7.90 -2.39 -0.02 1.20 16 Total: -1.00 -64.67 251.50 1.70 -62.97 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -0.52 Total: 13.65 kcal Atomic # 6 Polarization: -47.24 SS G_CDS: 1.46 Total: -45.78 kcal Atomic # 7 Polarization: -76.87 SS G_CDS: -1.26 Total: -78.13 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -64.67 1.70 -62.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260774025.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.880 kcal (2) G-P(sol) polarization free energy of solvation -64.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds