Wall clock time and date at job start Mon Mar 30 2020 01:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 H 1.08999 * 110.64027 * 56.70389 * 10 9 7 12 12 C 1.54594 * 110.72674 * 293.55025 * 10 9 7 13 13 C 1.53985 * 105.14080 * 219.68201 * 12 10 9 14 14 N 1.47903 * 107.05733 * 358.77302 * 13 12 10 15 15 C 1.46906 * 110.99642 * 145.84232 * 14 13 12 16 16 C 1.53003 * 117.49581 * 128.49565 * 15 14 13 17 17 C 1.52996 * 60.00236 * 252.51215 * 16 15 14 18 18 C 1.48534 * 105.82087 * 25.33414 * 14 13 12 19 19 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 21 21 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 22 22 H 1.08999 * 110.31038 * 338.60251 * 12 10 9 23 23 H 1.09000 * 110.30612 * 100.76441 * 12 10 9 24 24 H 1.08994 * 109.91701 * 118.12696 * 13 12 10 25 25 H 1.09001 * 109.91890 * 239.42596 * 13 12 10 26 26 H 1.09000 * 115.55134 * 274.20616 * 15 14 13 27 27 H 1.09005 * 117.49729 * 0.02562 * 16 15 14 28 28 H 1.09004 * 117.49528 * 145.01411 * 16 15 14 29 29 H 1.08995 * 117.49826 * 252.51148 * 17 16 15 30 30 H 1.08996 * 117.51488 * 107.47917 * 17 16 15 31 31 H 1.08997 * 110.66386 * 202.35673 * 18 14 13 32 32 H 1.09000 * 110.66543 * 79.22254 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 1 2.9209 -3.5863 0.8626 12 6 3.0399 -3.7083 -1.3150 13 6 3.1576 -5.2041 -1.6613 14 7 2.4933 -5.9548 -0.5737 15 6 1.8368 -7.1623 -1.0924 16 6 2.1511 -8.4900 -0.4000 17 6 2.7172 -8.2001 -1.7915 18 6 1.5003 -5.0204 0.0154 19 1 -0.4850 0.8400 0.0004 20 1 0.6245 -2.5529 0.8956 21 1 0.6244 -2.5609 -0.8844 22 1 2.4982 -3.1798 -2.0994 23 1 4.0296 -3.2726 -1.1782 24 1 2.6598 -5.4059 -2.6096 25 1 4.2078 -5.4897 -1.7218 26 1 0.8259 -7.0205 -1.4744 27 1 2.8447 -8.4674 0.4406 28 1 1.3467 -9.2219 -0.3262 29 1 2.2853 -8.7414 -2.6332 30 1 3.7834 -7.9867 -1.8669 31 1 1.2492 -5.3177 1.0335 32 1 0.6047 -4.9702 -0.6039 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260781932.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:53 Heat of formation + Delta-G solvation = 15.563733 kcal Electronic energy + Delta-G solvation = -12248.620598 eV Core-core repulsion = 10209.257575 eV Total energy + Delta-G solvation = -2039.363023 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.85982 -36.01821 -33.05856 -30.68466 -28.75622 -26.30639 -22.73871 -22.37884 -21.63023 -20.07874 -18.83383 -16.28148 -16.23339 -15.19221 -14.68199 -14.36406 -13.35869 -13.10834 -12.38364 -12.20445 -11.96060 -11.63616 -11.44738 -11.18456 -10.88074 -10.81304 -10.43972 -10.31863 -10.14613 -9.86385 -9.65612 -9.17687 -8.95758 -8.33980 -8.06706 -5.98405 -4.00069 3.32019 3.39679 3.43923 3.86118 4.18986 4.47950 5.00366 5.03885 5.26839 5.30620 5.37837 5.59561 5.66354 5.73348 5.78296 5.92451 6.02531 6.11313 6.22582 6.27357 6.50735 6.55379 6.86187 6.93147 7.02655 7.36430 7.45617 7.68739 7.82979 8.01235 8.44941 9.06837 9.63939 11.13058 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.086364 B = 0.007186 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.132093 B = 3895.436019 C = 4066.687704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.056 0.944 9 C 0.030 3.970 10 C -0.080 4.080 11 H 0.068 0.932 12 C -0.115 4.115 13 C 0.039 3.961 14 N -0.495 5.495 15 C 0.000 4.000 16 C -0.165 4.165 17 C -0.178 4.178 18 C 0.041 3.959 19 H 0.259 0.741 20 H 0.017 0.983 21 H 0.015 0.985 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.038 0.962 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.974 -12.402 -2.818 13.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.099 4.099 11 H 0.086 0.914 12 C -0.154 4.154 13 C -0.088 4.088 14 N -0.219 5.219 15 C -0.110 4.110 16 C -0.203 4.203 17 C -0.216 4.216 18 C -0.086 4.086 19 H 0.069 0.931 20 H 0.035 0.965 21 H 0.034 0.966 22 H 0.088 0.912 23 H 0.081 0.919 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.117 0.883 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.210 -12.465 -2.439 13.381 hybrid contribution -0.227 1.184 -0.645 1.368 sum 3.983 -11.281 -3.084 12.354 Atomic orbital electron populations 1.69973 1.06058 1.26423 1.51227 1.25024 0.94815 0.99229 0.95477 0.86563 0.80159 0.83925 0.77525 1.19736 1.21105 1.21061 1.21256 0.93072 0.90836 1.49980 0.92554 1.19131 0.93455 0.91008 0.97165 1.22174 0.97637 0.93629 0.96482 0.91391 1.22356 1.00878 0.93141 0.98977 1.22838 0.98733 0.94539 0.92716 1.64584 1.26140 1.04318 1.26845 1.22649 0.96932 0.88326 1.03065 1.22998 1.03278 0.97974 0.96038 1.22987 0.99952 1.02794 0.95818 1.23372 0.93561 0.92560 0.99121 0.93116 0.96487 0.96627 0.91163 0.91858 0.94336 0.91450 0.89541 0.88334 0.89147 0.89114 0.88586 0.90797 0.93884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.51 -14.41 8.68 -34.44 -0.30 -14.71 16 8 H 0.06 1.55 7.69 -52.49 -0.40 1.14 16 9 C 0.03 0.77 4.38 -27.88 -0.12 0.64 16 10 C -0.08 -1.68 3.04 -88.76 -0.27 -1.95 16 11 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 12 C -0.12 -2.20 6.02 -25.38 -0.15 -2.36 16 13 C 0.04 0.64 6.25 -2.76 -0.02 0.62 16 14 N -0.49 -8.21 5.43 -222.50 -1.21 -9.42 16 15 C 0.00 0.00 5.06 -67.70 -0.34 -0.35 16 16 C -0.17 -1.96 10.46 -26.73 -0.28 -2.24 16 17 C -0.18 -2.08 9.94 -26.73 -0.27 -2.34 16 18 C 0.04 0.75 6.00 -1.90 -0.01 0.74 16 19 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 20 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 21 H 0.02 0.42 8.08 -51.93 -0.42 0.00 16 22 H 0.07 1.43 7.80 -51.93 -0.41 1.02 16 23 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.04 0.60 7.77 -51.93 -0.40 0.20 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.09 1.22 7.86 -51.93 -0.41 0.81 16 27 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 1.14 8.12 -51.93 -0.42 0.72 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.04 0.81 7.74 -51.93 -0.40 0.40 16 LS Contribution 263.38 15.07 3.97 3.97 Total: -1.00 -29.40 263.38 -8.76 -38.16 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -5.38 Total: -2.66 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -1.86 Total: -20.45 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: -0.47 Total: -35.72 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.40 -8.76 -38.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260781932.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.723 kcal (2) G-P(sol) polarization free energy of solvation -29.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds