Wall clock time and date at job start Mon Mar 30 2020 01:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 H 1.08999 * 110.64027 * 56.70389 * 10 9 7 12 12 C 1.54594 * 110.72674 * 293.55025 * 10 9 7 13 13 C 1.53985 * 105.14080 * 219.68201 * 12 10 9 14 14 N 1.47903 * 107.05733 * 358.77302 * 13 12 10 15 15 C 1.46906 * 110.99642 * 145.84232 * 14 13 12 16 16 C 1.53003 * 117.49581 * 128.49565 * 15 14 13 17 17 C 1.52996 * 60.00236 * 252.51215 * 16 15 14 18 18 C 1.48534 * 105.82087 * 25.33414 * 14 13 12 19 19 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 21 21 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 22 22 H 1.08999 * 110.31038 * 338.60251 * 12 10 9 23 23 H 1.09000 * 110.30612 * 100.76441 * 12 10 9 24 24 H 1.08994 * 109.91701 * 118.12696 * 13 12 10 25 25 H 1.09001 * 109.91890 * 239.42596 * 13 12 10 26 26 H 1.09000 * 115.55134 * 274.20616 * 15 14 13 27 27 H 1.09005 * 117.49729 * 0.02562 * 16 15 14 28 28 H 1.09004 * 117.49528 * 145.01411 * 16 15 14 29 29 H 1.08995 * 117.49826 * 252.51148 * 17 16 15 30 30 H 1.08996 * 117.51488 * 107.47917 * 17 16 15 31 31 H 1.08997 * 110.66386 * 202.35673 * 18 14 13 32 32 H 1.09000 * 110.66543 * 79.22254 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 1 2.9209 -3.5863 0.8626 12 6 3.0399 -3.7083 -1.3150 13 6 3.1576 -5.2041 -1.6613 14 7 2.4933 -5.9548 -0.5737 15 6 1.8368 -7.1623 -1.0924 16 6 2.1511 -8.4900 -0.4000 17 6 2.7172 -8.2001 -1.7915 18 6 1.5003 -5.0204 0.0154 19 1 -0.4850 0.8400 0.0004 20 1 0.6245 -2.5529 0.8956 21 1 0.6244 -2.5609 -0.8844 22 1 2.4982 -3.1798 -2.0994 23 1 4.0296 -3.2726 -1.1782 24 1 2.6598 -5.4059 -2.6096 25 1 4.2078 -5.4897 -1.7218 26 1 0.8259 -7.0205 -1.4744 27 1 2.8447 -8.4674 0.4406 28 1 1.3467 -9.2219 -0.3262 29 1 2.2853 -8.7414 -2.6332 30 1 3.7834 -7.9867 -1.8669 31 1 1.2492 -5.3177 1.0335 32 1 0.6047 -4.9702 -0.6039 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260781932.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:53 Heat of formation + Delta-G solvation = -2.471457 kcal Electronic energy + Delta-G solvation = -12249.402662 eV Core-core repulsion = 10209.257575 eV Total energy + Delta-G solvation = -2040.145088 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.19989 -37.29391 -35.07633 -32.45097 -30.22283 -28.21329 -24.65404 -23.46746 -22.82690 -21.43820 -20.42594 -18.42707 -17.44148 -16.81591 -16.26999 -15.84256 -14.75484 -14.43093 -14.31238 -13.93735 -13.60468 -13.10131 -12.98793 -12.70121 -12.51846 -12.32642 -12.14929 -11.93043 -11.53393 -11.30644 -11.13657 -11.07761 -10.79842 -10.55160 -9.36353 -8.19018 -6.29008 1.39997 1.40454 1.53706 2.41395 2.85524 2.99303 3.14441 3.84115 3.92144 4.02198 4.09872 4.23751 4.38450 4.42088 4.66290 4.67993 4.81109 4.86986 4.95611 4.99558 5.11444 5.13838 5.27390 5.32674 5.34581 5.49232 5.74132 5.83536 5.92184 6.19395 6.28603 6.86933 7.39976 8.93248 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.086364 B = 0.007186 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.132093 B = 3895.436019 C = 4066.687704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.963 3.037 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.037 3.963 10 C -0.078 4.078 11 H 0.063 0.937 12 C -0.113 4.113 13 C 0.047 3.953 14 N -0.496 5.496 15 C -0.031 4.031 16 C -0.155 4.155 17 C -0.160 4.160 18 C 0.050 3.950 19 H 0.263 0.737 20 H -0.011 1.011 21 H -0.010 1.010 22 H 0.051 0.949 23 H 0.067 0.933 24 H 0.046 0.954 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.375 -13.335 -3.285 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.567 4.567 8 H 0.078 0.922 9 C 0.000 4.000 10 C -0.098 4.098 11 H 0.081 0.919 12 C -0.151 4.151 13 C -0.080 4.080 14 N -0.220 5.220 15 C -0.140 4.140 16 C -0.192 4.192 17 C -0.197 4.197 18 C -0.078 4.078 19 H 0.071 0.929 20 H 0.008 0.992 21 H 0.008 0.992 22 H 0.070 0.930 23 H 0.086 0.914 24 H 0.065 0.935 25 H 0.106 0.894 26 H 0.102 0.898 27 H 0.112 0.888 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.115 0.885 31 H 0.096 0.904 32 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 5.623 -13.418 -2.909 14.836 hybrid contribution -0.698 1.434 -0.496 1.670 sum 4.925 -11.983 -3.404 13.396 Atomic orbital electron populations 1.70104 1.07814 1.27605 1.52159 1.25964 0.95714 1.03298 0.94955 0.85421 0.79140 0.78940 0.77696 1.18558 1.20471 1.20488 1.21629 0.93440 0.91957 1.49710 0.92158 1.18976 0.93750 0.92757 0.94512 1.21987 0.96895 0.93309 0.97561 0.91893 1.22280 1.00269 0.95446 0.97082 1.22798 1.00050 0.92212 0.92968 1.64589 1.25580 1.04561 1.27255 1.22747 0.97463 0.88039 1.05781 1.23078 1.03562 0.96462 0.96138 1.23082 0.99613 1.00679 0.96375 1.23173 0.93375 0.91660 0.99546 0.92867 0.99242 0.99176 0.93038 0.91445 0.93532 0.89438 0.89825 0.88768 0.87207 0.87054 0.88487 0.90389 0.94805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.59 13.29 21.45 0.28 -57.30 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 7 C -0.53 -30.23 8.68 25.60 0.22 -30.01 16 8 H 0.06 3.32 7.69 -2.91 -0.02 3.30 16 9 C 0.04 2.01 4.38 29.85 0.13 2.14 16 10 C -0.08 -3.34 3.04 -9.59 -0.03 -3.37 16 11 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 12 C -0.11 -4.26 6.02 31.47 0.19 -4.08 16 13 C 0.05 1.45 6.25 86.44 0.54 1.99 16 14 N -0.50 -15.73 5.43 -857.85 -4.66 -20.39 16 15 C -0.03 -0.82 5.06 44.92 0.23 -0.59 16 16 C -0.15 -3.24 10.46 30.59 0.32 -2.92 16 17 C -0.16 -3.21 9.94 30.59 0.30 -2.91 16 18 C 0.05 1.85 6.00 86.65 0.52 2.37 16 19 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 20 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 21 H -0.01 -0.59 8.08 -2.38 -0.02 -0.61 16 22 H 0.05 2.12 7.80 -2.39 -0.02 2.10 16 23 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 24 H 0.05 1.37 7.77 -2.39 -0.02 1.35 16 25 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.08 2.24 7.86 -2.39 -0.02 2.23 16 27 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 28 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 29 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.10 1.96 8.12 -2.39 -0.02 1.94 16 31 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.03 1.29 7.74 -2.39 -0.02 1.27 16 Total: -1.00 -63.07 263.38 1.59 -61.48 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 1.06 Total: 6.55 kcal Atomic # 6 Polarization: -39.92 SS G_CDS: 2.89 Total: -37.03 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -4.38 Total: -77.70 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -63.07 1.59 -61.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260781932.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.006 kcal (2) G-P(sol) polarization free energy of solvation -63.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds