Wall clock time and date at job start Mon Mar 30 2020 01:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00142 * 2 1 4 4 H 1.48504 * 109.47357 * 270.00215 * 3 2 1 5 5 H 1.48499 * 109.47097 * 30.00106 * 3 2 1 6 6 H 1.48503 * 109.47405 * 150.00094 * 3 2 1 7 7 C 1.37881 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00576 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99821 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47166 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47199 * 179.97438 * 10 9 7 12 12 H 1.09007 * 112.95862 * 297.14740 * 11 10 9 13 13 C 1.53934 * 113.76096 * 165.49700 * 11 10 9 14 14 C 1.53935 * 86.45688 * 221.80153 * 13 11 10 15 15 N 1.47961 * 113.85909 * 68.88737 * 11 10 9 16 16 C 1.46902 * 111.00005 * 251.91231 * 15 11 10 17 17 C 1.53000 * 117.50052 * 243.74431 * 16 15 11 18 18 C 1.53006 * 117.49936 * 175.08325 * 16 15 11 19 19 H 0.96997 * 120.00190 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.46728 * 60.00109 * 9 7 2 21 21 H 1.09002 * 109.46949 * 300.00096 * 9 7 2 22 22 H 1.09009 * 109.46682 * 60.00333 * 10 9 7 23 23 H 1.08998 * 109.47176 * 300.00453 * 10 9 7 24 24 H 1.09002 * 113.73279 * 336.21344 * 13 11 10 25 25 H 1.09002 * 113.73078 * 107.39042 * 13 11 10 26 26 H 1.09001 * 113.76001 * 138.09365 * 14 13 11 27 27 H 1.09000 * 113.75996 * 269.45181 * 14 13 11 28 28 H 1.08999 * 115.55124 * 29.41815 * 16 15 11 29 29 H 1.09002 * 117.49726 * 0.02562 * 17 16 15 30 30 H 1.08997 * 117.49963 * 145.01917 * 17 16 15 31 31 H 1.08994 * 117.50081 * 214.97929 * 18 16 15 32 32 H 1.08998 * 117.49675 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 1 0.8721 -5.1265 0.8926 13 6 2.3510 -6.2062 -0.3552 14 6 1.1631 -6.6869 -1.2080 15 7 0.7575 -5.2615 -1.2628 16 6 -0.6931 -5.1194 -1.0800 17 6 -1.5548 -6.3696 -1.2687 18 6 -1.5783 -5.2574 -2.3203 19 1 -0.4850 0.8400 0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 2.8726 -3.6048 0.8878 23 1 2.8713 -3.6040 -0.8922 24 1 3.2376 -5.9575 -0.9384 25 1 2.5695 -6.8512 0.4959 26 1 1.4544 -7.0998 -2.1738 27 1 0.4624 -7.3224 -0.6665 28 1 -1.0032 -4.4049 -0.3175 29 1 -1.0452 -7.2976 -1.5281 30 1 -2.4318 -6.4774 -0.6306 31 1 -2.4709 -4.6341 -2.3736 32 1 -1.0842 -5.4532 -3.2720 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260992921.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:31 Heat of formation + Delta-G solvation = 48.572266 kcal Electronic energy + Delta-G solvation = -12353.124745 eV Core-core repulsion = 10315.193079 eV Total energy + Delta-G solvation = -2037.931666 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.89653 -35.68326 -33.39797 -30.93316 -27.63556 -26.37594 -23.44850 -22.16137 -21.10443 -20.07711 -18.84828 -16.53416 -16.19434 -15.02163 -14.51342 -14.31639 -13.85035 -12.73532 -12.50258 -12.19511 -11.92676 -11.64644 -11.23410 -10.99304 -10.88845 -10.76752 -10.66621 -10.34025 -10.10605 -9.87647 -9.61928 -9.13496 -8.91817 -8.25398 -8.08223 -5.91412 -3.92645 3.36867 3.42610 3.46075 3.95761 4.36001 4.52667 4.87715 4.98482 5.19838 5.20854 5.36860 5.44398 5.61414 5.74341 5.76673 5.81571 6.00994 6.11656 6.15486 6.17335 6.35379 6.49262 6.64009 6.87684 6.95068 7.27807 7.52109 7.78960 8.00242 8.12098 8.53683 9.14885 9.70393 11.19918 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.046362 B = 0.008829 C = 0.007710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.801519 B = 3170.594454 C = 3630.543966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.053 0.947 9 C 0.025 3.975 10 C -0.093 4.093 11 C 0.043 3.957 12 H 0.072 0.928 13 C -0.148 4.148 14 C -0.008 4.008 15 N -0.439 5.439 16 C -0.004 4.004 17 C -0.215 4.215 18 C -0.166 4.166 19 H 0.258 0.742 20 H 0.024 0.976 21 H 0.007 0.993 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.088 0.912 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.118 0.882 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.204 -12.615 -1.171 12.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.131 4.131 11 C -0.066 4.066 12 H 0.090 0.910 13 C -0.185 4.185 14 C -0.137 4.137 15 N -0.160 5.160 16 C -0.114 4.114 17 C -0.254 4.254 18 C -0.203 4.203 19 H 0.068 0.932 20 H 0.042 0.958 21 H 0.026 0.974 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.106 0.894 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.136 0.864 29 H 0.114 0.886 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.221 -12.087 -1.751 12.216 hybrid contribution -0.022 0.568 0.641 0.857 sum -0.243 -11.519 -1.110 11.575 Atomic orbital electron populations 1.69966 1.06002 1.26336 1.51285 1.25011 0.94822 0.99107 0.95548 0.86638 0.79852 0.83710 0.78049 1.20730 1.21329 1.19949 1.21299 0.92974 0.91281 1.49984 0.92862 1.19023 0.94055 0.91037 0.97082 1.21518 0.98524 0.92764 1.00334 1.23584 0.94786 0.96768 0.91463 0.91003 1.23445 0.97994 0.97614 0.99493 1.24085 0.97049 0.92188 1.00365 1.68547 1.04090 1.11804 1.31597 1.23237 0.88296 0.99200 1.00641 1.23464 1.03164 0.94115 1.04632 1.22929 1.01702 1.01259 0.94445 0.93192 0.95751 0.97421 0.92993 0.92621 0.89378 0.91665 0.90122 0.91002 0.86433 0.88560 0.89178 0.88838 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.03 0.67 4.93 -27.88 -0.14 0.53 16 10 C -0.09 -2.01 5.20 -26.73 -0.14 -2.15 16 11 C 0.04 0.76 3.20 -66.65 -0.21 0.55 16 12 H 0.07 1.26 7.92 -51.92 -0.41 0.85 16 13 C -0.15 -2.10 7.84 -25.80 -0.20 -2.30 16 14 C -0.01 -0.12 6.99 -2.57 -0.02 -0.13 16 15 N -0.44 -7.75 6.20 -222.44 -1.38 -9.13 16 16 C 0.00 -0.07 5.76 -67.71 -0.39 -0.46 16 17 C -0.22 -2.90 9.25 -26.69 -0.25 -3.14 16 18 C -0.17 -2.51 10.46 -26.69 -0.28 -2.79 16 19 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 20 H 0.02 0.70 8.04 -51.93 -0.42 0.28 16 21 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 22 H 0.05 1.07 8.14 -51.92 -0.42 0.65 16 23 H 0.06 1.22 8.12 -51.93 -0.42 0.79 16 24 H 0.09 1.25 8.08 -51.93 -0.42 0.83 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.07 0.90 6.04 -51.93 -0.31 0.58 16 28 H 0.12 2.24 8.04 -51.93 -0.42 1.83 16 29 H 0.10 1.18 6.06 -51.93 -0.31 0.86 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 263.90 15.07 3.98 3.98 Total: -1.00 -30.83 263.90 -8.94 -39.77 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -5.22 Total: -1.19 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -2.04 Total: -23.79 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: -0.64 Total: -35.98 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.83 -8.94 -39.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992921.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.345 kcal (2) G-P(sol) polarization free energy of solvation -30.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds