Wall clock time and date at job start Mon Mar 30 2020 01:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00142 * 2 1 4 4 H 1.48504 * 109.47357 * 270.00215 * 3 2 1 5 5 H 1.48499 * 109.47097 * 30.00106 * 3 2 1 6 6 H 1.48503 * 109.47405 * 150.00094 * 3 2 1 7 7 C 1.37881 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00576 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99821 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47166 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47199 * 179.97438 * 10 9 7 12 12 H 1.09007 * 112.95862 * 297.14740 * 11 10 9 13 13 C 1.53934 * 113.76096 * 165.49700 * 11 10 9 14 14 C 1.53935 * 86.45688 * 221.80153 * 13 11 10 15 15 N 1.47961 * 113.85909 * 68.88737 * 11 10 9 16 16 C 1.46902 * 111.00005 * 251.91231 * 15 11 10 17 17 C 1.53000 * 117.50052 * 243.74431 * 16 15 11 18 18 C 1.53006 * 117.49936 * 175.08325 * 16 15 11 19 19 H 0.96997 * 120.00190 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.46728 * 60.00109 * 9 7 2 21 21 H 1.09002 * 109.46949 * 300.00096 * 9 7 2 22 22 H 1.09009 * 109.46682 * 60.00333 * 10 9 7 23 23 H 1.08998 * 109.47176 * 300.00453 * 10 9 7 24 24 H 1.09002 * 113.73279 * 336.21344 * 13 11 10 25 25 H 1.09002 * 113.73078 * 107.39042 * 13 11 10 26 26 H 1.09001 * 113.76001 * 138.09365 * 14 13 11 27 27 H 1.09000 * 113.75996 * 269.45181 * 14 13 11 28 28 H 1.08999 * 115.55124 * 29.41815 * 16 15 11 29 29 H 1.09002 * 117.49726 * 0.02562 * 17 16 15 30 30 H 1.08997 * 117.49963 * 145.01917 * 17 16 15 31 31 H 1.08994 * 117.50081 * 214.97929 * 18 16 15 32 32 H 1.08998 * 117.49675 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 1 0.8721 -5.1265 0.8926 13 6 2.3510 -6.2062 -0.3552 14 6 1.1631 -6.6869 -1.2080 15 7 0.7575 -5.2615 -1.2628 16 6 -0.6931 -5.1194 -1.0800 17 6 -1.5548 -6.3696 -1.2687 18 6 -1.5783 -5.2574 -2.3203 19 1 -0.4850 0.8400 0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 2.8726 -3.6048 0.8878 23 1 2.8713 -3.6040 -0.8922 24 1 3.2376 -5.9575 -0.9384 25 1 2.5695 -6.8512 0.4959 26 1 1.4544 -7.0998 -2.1738 27 1 0.4624 -7.3224 -0.6665 28 1 -1.0032 -4.4049 -0.3175 29 1 -1.0452 -7.2976 -1.5281 30 1 -2.4318 -6.4774 -0.6306 31 1 -2.4709 -4.6341 -2.3736 32 1 -1.0842 -5.4532 -3.2720 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260992921.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:31 Heat of formation + Delta-G solvation = 28.284947 kcal Electronic energy + Delta-G solvation = -12354.004469 eV Core-core repulsion = 10315.193079 eV Total energy + Delta-G solvation = -2038.811390 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.16358 -36.96491 -35.49981 -32.92698 -28.87531 -28.23361 -25.16515 -23.40057 -22.60766 -21.67716 -20.16665 -18.42862 -17.76905 -16.57524 -16.20970 -15.80693 -15.32212 -14.41946 -14.03153 -13.91830 -13.58127 -13.00860 -12.83205 -12.73415 -12.52124 -12.27323 -12.11097 -11.97528 -11.63741 -11.38427 -11.25767 -11.00755 -10.82109 -10.53526 -9.35590 -8.18529 -6.29764 1.37978 1.40175 1.51066 2.40915 2.75734 3.11774 3.13796 3.66557 3.82695 3.95737 4.01456 4.17367 4.40242 4.46110 4.57007 4.66812 4.72977 4.79093 4.94424 4.98488 5.05204 5.11359 5.21952 5.25246 5.37701 5.52679 5.59665 5.83613 5.89518 6.26202 6.28511 6.88055 7.38902 8.92986 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.046362 B = 0.008829 C = 0.007710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.801519 B = 3170.594454 C = 3630.543966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.037 3.963 10 C -0.083 4.083 11 C 0.034 3.966 12 H 0.069 0.931 13 C -0.131 4.131 14 C 0.000 4.000 15 N -0.467 5.467 16 C -0.036 4.036 17 C -0.177 4.177 18 C -0.173 4.173 19 H 0.262 0.738 20 H -0.009 1.009 21 H -0.020 1.020 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.753 -13.849 -1.319 13.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.121 4.121 11 C -0.075 4.075 12 H 0.087 0.913 13 C -0.168 4.168 14 C -0.128 4.128 15 N -0.189 5.189 16 C -0.146 4.146 17 C -0.215 4.215 18 C -0.211 4.211 19 H 0.071 0.929 20 H 0.010 0.990 21 H -0.002 1.002 22 H 0.077 0.923 23 H 0.068 0.932 24 H 0.107 0.893 25 H 0.111 0.889 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.100 0.900 29 H 0.137 0.863 30 H 0.123 0.877 31 H 0.110 0.890 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.743 -13.341 -1.900 13.496 hybrid contribution -0.371 0.965 0.680 1.237 sum 0.372 -12.375 -1.220 12.441 Atomic orbital electron populations 1.70113 1.07823 1.27568 1.51872 1.26004 0.95795 1.03385 0.94801 0.85455 0.78748 0.78430 0.78461 1.19898 1.20599 1.18584 1.21770 0.93490 0.92697 1.50272 0.92376 1.18829 0.94271 0.92886 0.94068 1.21331 0.97488 0.93002 1.00234 1.23482 0.95915 0.96208 0.91896 0.91311 1.23358 0.97568 0.95531 1.00387 1.24176 0.96792 0.90385 1.01397 1.68520 1.04267 1.14775 1.31305 1.23118 0.88896 1.01448 1.01147 1.23521 1.02184 0.93318 1.02502 1.22992 1.01192 1.02568 0.94307 0.92932 0.99041 1.00192 0.92341 0.93221 0.89304 0.88898 0.88590 0.89103 0.90046 0.86330 0.87708 0.88970 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.06 13.29 21.45 0.28 -58.77 16 2 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 3 Si 0.96 45.89 29.54 68.60 2.03 47.92 16 4 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.54 -32.60 9.11 25.60 0.23 -32.37 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.04 2.05 4.93 29.85 0.15 2.19 16 10 C -0.08 -3.61 5.20 30.59 0.16 -3.45 16 11 C 0.03 1.21 3.20 45.02 0.14 1.35 16 12 H 0.07 2.44 7.92 -2.38 -0.02 2.43 16 13 C -0.13 -3.38 7.84 31.24 0.24 -3.14 16 14 C 0.00 0.00 6.99 86.34 0.60 0.61 16 15 N -0.47 -16.31 6.20 -857.66 -5.31 -21.62 16 16 C -0.04 -1.26 5.76 44.92 0.26 -1.00 16 17 C -0.18 -4.40 9.25 30.62 0.28 -4.11 16 18 C -0.17 -5.19 10.46 30.62 0.32 -4.87 16 19 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 20 H -0.01 -0.55 8.04 -2.39 -0.02 -0.57 16 21 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 22 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 23 H 0.05 2.19 8.12 -2.39 -0.02 2.18 16 24 H 0.09 2.30 8.08 -2.39 -0.02 2.28 16 25 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.10 2.11 8.14 -2.39 -0.02 2.10 16 27 H 0.09 1.91 6.04 -2.39 -0.01 1.90 16 28 H 0.08 3.35 8.04 -2.39 -0.02 3.33 16 29 H 0.12 2.43 6.06 -2.39 -0.01 2.42 16 30 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -68.17 263.90 0.92 -67.25 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 1.07 Total: 9.71 kcal Atomic # 6 Polarization: -47.34 SS G_CDS: 2.86 Total: -44.48 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -5.03 Total: -80.40 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -68.17 0.92 -67.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992921.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.534 kcal (2) G-P(sol) polarization free energy of solvation -68.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds