Wall clock time and date at job start Mon Mar 30 2020 01:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 119.99963 * 2 1 4 4 H 1.48503 * 109.47448 * 239.99997 * 3 2 1 5 5 H 1.48506 * 109.47403 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47296 * 120.00042 * 3 2 1 7 7 C 1.37878 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99810 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00352 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.43247 * 298.91214 * 9 7 2 11 11 C 1.54261 * 110.48493 * 61.45450 * 9 7 2 12 12 C 1.53870 * 106.59800 * 142.29216 * 11 9 7 13 13 C 1.54265 * 106.60125 * 359.97438 * 12 11 9 14 14 H 1.09005 * 110.48935 * 95.20121 * 13 12 11 15 15 N 1.46902 * 110.49089 * 217.71402 * 13 12 11 16 16 C 1.47961 * 110.99929 * 186.66384 * 15 13 12 17 17 C 1.53937 * 86.18083 * 137.58366 * 16 15 13 18 18 C 1.48305 * 111.00429 * 286.01511 * 15 13 12 19 19 C 1.54890 * 104.31133 * 336.46255 * 13 12 11 20 20 H 0.97000 * 120.00208 * 0.02562 * 1 2 3 21 21 H 1.08997 * 110.03219 * 23.00615 * 11 9 7 22 22 H 1.09000 * 110.07411 * 261.59454 * 11 9 7 23 23 H 1.09006 * 110.03275 * 240.71635 * 12 11 9 24 24 H 1.08999 * 110.08069 * 119.30728 * 12 11 9 25 25 H 1.08998 * 113.76278 * 23.26622 * 16 15 13 26 26 H 1.08997 * 113.75643 * 251.89756 * 16 15 13 27 27 H 1.09000 * 113.73308 * 90.63100 * 17 16 15 28 28 H 1.08999 * 113.73341 * 221.81776 * 17 16 15 29 29 H 1.08998 * 113.85805 * 108.14336 * 18 15 13 30 30 H 1.08999 * 113.75519 * 336.68362 * 18 15 13 31 31 H 1.08996 * 110.75636 * 156.19087 * 19 13 12 32 32 H 1.09005 * 110.75271 * 279.55812 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6335 -2.5820 0.8938 11 6 0.3826 -2.6212 -1.2696 12 6 0.4439 -4.0960 -1.7040 13 6 1.3479 -4.8187 -0.6841 14 1 0.7465 -5.2806 0.0989 15 7 2.1771 -5.8279 -1.3564 16 6 2.9309 -6.6359 -0.3724 17 6 2.5582 -7.8519 -1.2396 18 6 1.3689 -7.0113 -1.7383 19 6 2.2346 -3.6941 -0.0941 20 1 -0.4850 0.8400 -0.0004 21 1 0.7817 -1.9829 -2.0579 22 1 -0.6467 -2.3400 -1.0471 23 1 0.8727 -4.1735 -2.7032 24 1 -0.5553 -4.5315 -1.6921 25 1 2.4815 -6.6502 0.6205 26 1 3.9993 -6.4207 -0.3539 27 1 3.2904 -8.0791 -2.0144 28 1 2.2643 -8.7287 -0.6625 29 1 1.1903 -7.0959 -2.8102 30 1 0.4637 -7.1352 -1.1440 31 1 2.6039 -3.9713 0.8932 32 1 3.0612 -3.4615 -0.7656 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261011434.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:22 Heat of formation + Delta-G solvation = 17.700197 kcal Electronic energy + Delta-G solvation = -12541.866202 eV Core-core repulsion = 10502.595823 eV Total energy + Delta-G solvation = -2039.270379 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.60698 -36.28267 -32.40701 -29.15297 -28.10419 -25.85121 -25.25316 -23.32788 -19.82842 -19.27835 -18.90631 -16.44564 -15.64840 -15.19969 -14.56057 -14.29091 -13.67589 -12.78631 -12.55510 -12.18181 -12.01470 -11.51666 -11.17866 -10.94532 -10.78134 -10.65799 -10.42381 -9.99114 -9.92522 -9.79962 -9.44073 -9.01707 -8.65345 -8.41384 -8.31188 -5.94485 -3.96777 3.36275 3.40438 3.43484 4.22768 4.49696 4.67644 5.01125 5.34629 5.45144 5.48733 5.63956 5.66762 5.77159 5.85705 5.92219 6.03412 6.26414 6.33732 6.45014 6.65113 6.82405 6.87557 6.93473 7.09959 7.25662 7.44242 7.61505 7.79953 7.98608 8.09743 8.54100 9.05766 9.66689 11.15315 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.075593 B = 0.008412 C = 0.007897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.317366 B = 3327.893482 C = 3544.992461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.050 3.950 10 H 0.025 0.975 11 C -0.092 4.092 12 C -0.115 4.115 13 C 0.043 3.957 14 H 0.040 0.960 15 N -0.472 5.472 16 C 0.003 3.997 17 C -0.148 4.148 18 C 0.000 4.000 19 C -0.103 4.103 20 H 0.259 0.741 21 H 0.052 0.948 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.040 0.960 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.041 0.959 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.202 -11.848 -1.750 12.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.031 3.969 10 H 0.043 0.957 11 C -0.131 4.131 12 C -0.153 4.153 13 C -0.066 4.066 14 H 0.058 0.942 15 N -0.194 5.194 16 C -0.126 4.126 17 C -0.186 4.186 18 C -0.129 4.129 19 C -0.141 4.141 20 H 0.069 0.931 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.374 -11.321 -2.249 11.784 hybrid contribution -0.155 0.621 0.665 0.923 sum 2.219 -10.701 -1.584 11.043 Atomic orbital electron populations 1.69968 1.05872 1.26433 1.50737 1.24981 0.94835 0.98966 0.95241 0.86709 0.79628 0.83363 0.78581 1.20293 1.21382 1.20360 1.21139 0.92785 0.90555 1.50552 0.92732 1.19436 0.92150 0.91583 0.93759 0.95683 1.22013 1.00684 0.90862 0.99547 1.22229 0.96571 0.98283 0.98237 1.23179 0.94750 0.93416 0.95211 0.94185 1.68739 1.17171 1.05815 1.27721 1.23773 1.00711 0.92932 0.95214 1.23317 0.98585 0.96846 0.99806 1.23862 0.95648 0.91742 1.01694 1.22590 0.98663 0.94858 0.97942 0.93117 0.92952 0.92830 0.92379 0.94073 0.91662 0.89799 0.89572 0.91678 0.89940 0.91763 0.94030 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 12.35 55.43 0.68 -25.51 16 2 C 0.06 1.74 5.33 -17.82 -0.09 1.64 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -14.49 8.40 -34.44 -0.29 -14.78 16 8 H 0.05 1.53 7.78 -52.48 -0.41 1.12 16 9 C 0.05 1.28 2.79 -90.03 -0.25 1.03 16 10 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 11 C -0.09 -2.25 5.40 -25.62 -0.14 -2.39 16 12 C -0.12 -2.32 6.17 -25.62 -0.16 -2.48 16 13 C 0.04 0.82 2.12 -66.05 -0.14 0.68 16 14 H 0.04 0.75 7.78 -51.93 -0.40 0.35 16 15 N -0.47 -7.87 5.96 -228.30 -1.36 -9.23 16 16 C 0.00 0.04 7.58 -2.76 -0.02 0.02 16 17 C -0.15 -1.71 8.27 -25.79 -0.21 -1.92 16 18 C 0.00 -0.01 7.66 -2.57 -0.02 -0.03 16 19 C -0.10 -2.24 5.54 -24.65 -0.14 -2.38 16 20 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 21 H 0.05 1.36 7.83 -51.93 -0.41 0.96 16 22 H 0.05 1.37 7.94 -51.93 -0.41 0.96 16 23 H 0.06 1.15 8.04 -51.93 -0.42 0.74 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.07 0.90 7.83 -51.93 -0.41 0.49 16 26 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.85 7.80 -51.93 -0.40 0.44 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 1.48 8.05 -51.93 -0.42 1.06 16 LS Contribution 256.77 15.07 3.87 3.87 Total: -1.00 -29.11 256.77 -8.66 -37.78 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -5.37 Total: -3.03 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -1.46 Total: -20.61 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: -0.68 Total: -34.74 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.11 -8.66 -37.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011434.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.477 kcal (2) G-P(sol) polarization free energy of solvation -29.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds