Wall clock time and date at job start Mon Mar 30 2020 01:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 119.99963 * 2 1 4 4 H 1.48503 * 109.47448 * 239.99997 * 3 2 1 5 5 H 1.48506 * 109.47403 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47296 * 120.00042 * 3 2 1 7 7 C 1.37878 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99810 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00352 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.43247 * 298.91214 * 9 7 2 11 11 C 1.54261 * 110.48493 * 61.45450 * 9 7 2 12 12 C 1.53870 * 106.59800 * 142.29216 * 11 9 7 13 13 C 1.54265 * 106.60125 * 359.97438 * 12 11 9 14 14 H 1.09005 * 110.48935 * 95.20121 * 13 12 11 15 15 N 1.46902 * 110.49089 * 217.71402 * 13 12 11 16 16 C 1.47961 * 110.99929 * 186.66384 * 15 13 12 17 17 C 1.53937 * 86.18083 * 137.58366 * 16 15 13 18 18 C 1.48305 * 111.00429 * 286.01511 * 15 13 12 19 19 C 1.54890 * 104.31133 * 336.46255 * 13 12 11 20 20 H 0.97000 * 120.00208 * 0.02562 * 1 2 3 21 21 H 1.08997 * 110.03219 * 23.00615 * 11 9 7 22 22 H 1.09000 * 110.07411 * 261.59454 * 11 9 7 23 23 H 1.09006 * 110.03275 * 240.71635 * 12 11 9 24 24 H 1.08999 * 110.08069 * 119.30728 * 12 11 9 25 25 H 1.08998 * 113.76278 * 23.26622 * 16 15 13 26 26 H 1.08997 * 113.75643 * 251.89756 * 16 15 13 27 27 H 1.09000 * 113.73308 * 90.63100 * 17 16 15 28 28 H 1.08999 * 113.73341 * 221.81776 * 17 16 15 29 29 H 1.08998 * 113.85805 * 108.14336 * 18 15 13 30 30 H 1.08999 * 113.75519 * 336.68362 * 18 15 13 31 31 H 1.08996 * 110.75636 * 156.19087 * 19 13 12 32 32 H 1.09005 * 110.75271 * 279.55812 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6335 -2.5820 0.8938 11 6 0.3826 -2.6212 -1.2696 12 6 0.4439 -4.0960 -1.7040 13 6 1.3479 -4.8187 -0.6841 14 1 0.7465 -5.2806 0.0989 15 7 2.1771 -5.8279 -1.3564 16 6 2.9309 -6.6359 -0.3724 17 6 2.5582 -7.8519 -1.2396 18 6 1.3689 -7.0113 -1.7383 19 6 2.2346 -3.6941 -0.0941 20 1 -0.4850 0.8400 -0.0004 21 1 0.7817 -1.9829 -2.0579 22 1 -0.6467 -2.3400 -1.0471 23 1 0.8727 -4.1735 -2.7032 24 1 -0.5553 -4.5315 -1.6921 25 1 2.4815 -6.6502 0.6205 26 1 3.9993 -6.4207 -0.3539 27 1 3.2904 -8.0791 -2.0144 28 1 2.2643 -8.7287 -0.6625 29 1 1.1903 -7.0959 -2.8102 30 1 0.4637 -7.1352 -1.1440 31 1 2.6039 -3.9713 0.8932 32 1 3.0612 -3.4615 -0.7656 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261011434.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:22 Heat of formation + Delta-G solvation = -0.873494 kcal Electronic energy + Delta-G solvation = -12542.671618 eV Core-core repulsion = 10502.595823 eV Total energy + Delta-G solvation = -2040.075795 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.86250 -38.00187 -34.48266 -30.77930 -29.86939 -27.31991 -26.62390 -25.16710 -21.12760 -20.92611 -20.57171 -18.40199 -17.02814 -16.69719 -16.40183 -15.95551 -14.95712 -14.62716 -14.12354 -13.83713 -13.42999 -13.13776 -12.89401 -12.63644 -12.44194 -12.28048 -11.92268 -11.63835 -11.49021 -11.41314 -11.29622 -10.89610 -10.76507 -10.48745 -9.64259 -8.12891 -6.22935 1.40070 1.42020 1.49656 2.42840 3.06615 3.17480 3.64502 3.92475 3.94618 4.07056 4.29614 4.48472 4.55865 4.65209 4.75495 4.83958 4.87591 4.92936 4.98991 5.05084 5.11490 5.22495 5.34748 5.41324 5.48380 5.55028 5.66766 5.89278 5.97021 6.27152 6.39456 6.87464 7.44311 8.96204 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.075593 B = 0.008412 C = 0.007897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.317366 B = 3327.893482 C = 3544.992461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.011 3.989 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.535 4.535 8 H 0.051 0.949 9 C 0.039 3.961 10 H -0.003 1.003 11 C -0.083 4.083 12 C -0.105 4.105 13 C 0.056 3.944 14 H 0.046 0.954 15 N -0.494 5.494 16 C -0.005 4.005 17 C -0.128 4.128 18 C -0.003 4.003 19 C -0.092 4.092 20 H 0.261 0.739 21 H 0.025 0.975 22 H 0.030 0.970 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.925 -13.190 -2.048 13.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.780 3.220 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.573 4.573 8 H 0.069 0.931 9 C 0.020 3.980 10 H 0.015 0.985 11 C -0.122 4.122 12 C -0.143 4.143 13 C -0.053 4.053 14 H 0.064 0.936 15 N -0.217 5.217 16 C -0.133 4.133 17 C -0.166 4.166 18 C -0.132 4.132 19 C -0.130 4.130 20 H 0.069 0.931 21 H 0.044 0.956 22 H 0.049 0.951 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.107 -12.680 -2.547 13.301 hybrid contribution -0.384 1.025 0.771 1.339 sum 2.724 -11.654 -1.776 12.100 Atomic orbital electron populations 1.70094 1.07263 1.27294 1.51314 1.25790 0.95719 1.02506 0.94778 0.85668 0.78446 0.79010 0.78894 1.19669 1.20792 1.19500 1.21515 0.92927 0.92135 1.50772 0.93051 1.19441 0.92869 0.92604 0.93054 0.98492 1.21800 0.98675 0.93598 0.98143 1.22092 0.98222 0.95288 0.98674 1.22933 0.94087 0.93367 0.94881 0.93583 1.68719 1.17774 1.06771 1.28446 1.23897 1.00476 0.93667 0.95288 1.23230 0.97452 0.96503 0.99381 1.23989 0.96392 0.90431 1.02387 1.22385 0.97728 0.94488 0.98385 0.93058 0.95564 0.95064 0.91918 0.92100 0.91432 0.89695 0.88627 0.89254 0.89188 0.91186 0.93289 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.28 12.35 21.45 0.26 -55.02 16 2 C 0.01 0.62 5.33 84.66 0.45 1.07 16 3 Si 0.95 44.98 29.54 68.60 2.03 47.00 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 7 C -0.54 -30.95 8.40 25.60 0.22 -30.74 16 8 H 0.05 2.92 7.78 -2.91 -0.02 2.90 16 9 C 0.04 2.07 2.79 -10.41 -0.03 2.04 16 10 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 11 C -0.08 -4.17 5.40 31.32 0.17 -4.00 16 12 C -0.10 -4.14 6.17 31.32 0.19 -3.95 16 13 C 0.06 2.07 2.12 45.99 0.10 2.17 16 14 H 0.05 1.65 7.78 -2.38 -0.02 1.63 16 15 N -0.49 -15.37 5.96 -876.21 -5.22 -20.59 16 16 C 0.00 -0.12 7.58 86.41 0.65 0.54 16 17 C -0.13 -2.48 8.27 31.24 0.26 -2.23 16 18 C 0.00 -0.08 7.66 86.34 0.66 0.58 16 19 C -0.09 -4.01 5.54 31.94 0.18 -3.84 16 20 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 21 H 0.03 1.39 7.83 -2.39 -0.02 1.37 16 22 H 0.03 1.64 7.94 -2.39 -0.02 1.62 16 23 H 0.06 2.41 8.04 -2.38 -0.02 2.40 16 24 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.07 1.69 7.83 -2.39 -0.02 1.67 16 26 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.07 1.61 7.80 -2.39 -0.02 1.59 16 31 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.05 2.41 8.05 -2.38 -0.02 2.40 16 Total: -1.00 -62.83 256.77 0.98 -61.86 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: 1.06 Total: 5.10 kcal Atomic # 6 Polarization: -41.20 SS G_CDS: 2.85 Total: -38.35 kcal Atomic # 7 Polarization: -70.65 SS G_CDS: -4.96 Total: -75.61 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -62.83 0.98 -61.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011434.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.982 kcal (2) G-P(sol) polarization free energy of solvation -62.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds