Wall clock time and date at job start Mon Mar 30 2020 01:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99961 * 2 1 4 4 H 1.48501 * 109.46991 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47489 * 299.99972 * 3 2 1 6 6 H 1.48501 * 109.47174 * 60.00394 * 3 2 1 7 7 C 1.37883 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99660 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.05316 * 300.02861 * 9 7 2 11 11 C 1.54257 * 110.03618 * 61.45345 * 9 7 2 12 12 C 1.54889 * 104.31652 * 142.95862 * 11 9 7 13 13 C 1.54891 * 102.74907 * 321.99408 * 12 11 9 14 14 H 1.09003 * 110.48394 * 279.26347 * 13 12 11 15 15 N 1.46891 * 110.48911 * 156.62047 * 13 12 11 16 16 C 1.47481 * 111.00365 * 76.80779 * 15 13 12 17 17 C 1.53519 * 87.93141 * 138.70482 * 16 15 13 18 18 C 1.47486 * 111.00017 * 172.78281 * 15 13 12 19 19 C 1.54225 * 110.14151 * 178.48014 * 9 7 2 20 20 H 0.97002 * 120.00329 * 0.02562 * 1 2 3 21 21 H 1.09001 * 110.48899 * 24.21114 * 11 9 7 22 22 H 1.09000 * 110.48878 * 261.70307 * 11 9 7 23 23 H 1.09006 * 110.75380 * 80.30366 * 12 11 9 24 24 H 1.08996 * 110.75720 * 203.67330 * 12 11 9 25 25 H 1.08993 * 113.47653 * 253.47170 * 16 15 13 26 26 H 1.08998 * 113.47312 * 23.93980 * 16 15 13 27 27 H 1.09004 * 114.16729 * 220.33297 * 17 16 15 28 28 H 1.08999 * 114.16990 * 87.62504 * 17 16 15 29 29 H 1.08997 * 113.47410 * 336.05897 * 18 15 13 30 30 H 1.08999 * 113.47578 * 106.53019 * 18 15 13 31 31 H 1.08999 * 110.00472 * 121.44218 * 19 9 7 32 32 H 1.08997 * 110.06204 * 0.05131 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6200 -2.5672 0.8845 11 6 0.3874 -2.6097 -1.2751 12 6 0.4679 -4.1069 -1.6637 13 6 1.9380 -4.4670 -1.3345 14 1 2.5991 -4.1439 -2.1388 15 7 2.0744 -5.9112 -1.1040 16 6 2.0628 -6.6534 -2.3784 17 6 3.1885 -7.5311 -1.8134 18 6 3.4919 -6.2919 -0.9596 19 6 2.2389 -3.6828 -0.0405 20 1 -0.4851 0.8400 -0.0004 21 1 0.7980 -1.9868 -2.0698 22 1 -0.6433 -2.3256 -1.0630 23 1 -0.2194 -4.7000 -1.0603 24 1 0.2657 -4.2417 -2.7262 25 1 1.1352 -7.1976 -2.5556 26 1 2.3693 -6.0517 -3.2340 27 1 3.9673 -7.7774 -2.5351 28 1 2.8396 -8.3918 -1.2427 29 1 4.1797 -5.5937 -1.4366 30 1 3.7754 -6.5298 0.0657 31 1 2.0874 -4.3236 0.8281 32 1 3.2643 -3.3136 -0.0576 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261011441.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:31 Heat of formation + Delta-G solvation = 20.214876 kcal Electronic energy + Delta-G solvation = -12569.754453 eV Core-core repulsion = 10530.593118 eV Total energy + Delta-G solvation = -2039.161334 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.81746 -36.35454 -32.41016 -29.21657 -28.10415 -25.75531 -25.18984 -23.38707 -19.85304 -19.45290 -18.75430 -16.44909 -15.78069 -15.48359 -14.47979 -13.94094 -13.60846 -12.93513 -12.49834 -12.29721 -12.09254 -11.46126 -11.20286 -10.98220 -10.70364 -10.55538 -10.42844 -10.03929 -9.85674 -9.72047 -9.50431 -9.12394 -8.64793 -8.51732 -8.31035 -5.95827 -3.98201 3.31572 3.39553 3.43331 4.34250 4.47625 4.62171 5.04750 5.32121 5.44436 5.49552 5.64976 5.67490 5.77154 5.87874 5.93004 6.05116 6.23995 6.33734 6.51559 6.65004 6.73750 6.82421 6.94574 7.12036 7.27519 7.42016 7.62151 7.80482 7.94921 8.09219 8.52930 9.05284 9.65155 11.13721 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.069182 B = 0.008652 C = 0.008099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.633805 B = 3235.354374 C = 3456.453505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.046 3.954 10 H 0.027 0.973 11 C -0.090 4.090 12 C -0.117 4.117 13 C 0.046 3.954 14 H 0.044 0.956 15 N -0.466 5.466 16 C -0.003 4.003 17 C -0.149 4.149 18 C -0.001 4.001 19 C -0.103 4.103 20 H 0.258 0.742 21 H 0.050 0.950 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.042 0.958 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.280 -10.598 -4.158 12.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.027 3.973 10 H 0.045 0.955 11 C -0.129 4.129 12 C -0.155 4.155 13 C -0.063 4.063 14 H 0.062 0.938 15 N -0.188 5.188 16 C -0.132 4.132 17 C -0.187 4.187 18 C -0.130 4.130 19 C -0.141 4.141 20 H 0.068 0.932 21 H 0.069 0.931 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.061 0.939 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.630 -10.576 -3.617 11.752 hybrid contribution 0.990 1.366 -0.701 1.826 sum 4.620 -9.210 -4.318 11.172 Atomic orbital electron populations 1.69988 1.05844 1.26202 1.50806 1.24996 0.94840 0.98964 0.95322 0.86611 0.80164 0.84150 0.77525 1.19878 1.21116 1.21072 1.21350 0.92651 0.90654 1.50353 0.92769 1.19270 0.92362 0.91439 0.94199 0.95482 1.22231 1.00785 0.90573 0.99277 1.22588 0.94600 0.99637 0.98686 1.23160 0.97848 0.86850 0.98432 0.93773 1.69051 1.17521 1.08777 1.23496 1.23687 0.99278 0.96677 0.93545 1.23132 0.98577 0.97460 0.99522 1.23665 0.92191 0.96184 1.00976 1.22320 1.00336 0.97000 0.94485 0.93210 0.93128 0.92415 0.91952 0.93911 0.90322 0.91812 0.91279 0.89327 0.91663 0.90205 0.93258 0.93195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 12.33 55.43 0.68 -25.40 16 2 C 0.06 1.70 5.32 -17.82 -0.09 1.61 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.51 -14.38 8.39 -34.44 -0.29 -14.67 16 8 H 0.05 1.51 7.34 -52.49 -0.39 1.12 16 9 C 0.05 1.19 2.86 -90.47 -0.26 0.93 16 10 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 11 C -0.09 -2.18 5.36 -25.08 -0.13 -2.31 16 12 C -0.12 -2.35 6.29 -24.74 -0.16 -2.51 16 13 C 0.05 0.88 2.13 -66.06 -0.14 0.74 16 14 H 0.04 0.86 7.66 -51.93 -0.40 0.46 16 15 N -0.47 -7.78 6.11 -234.59 -1.43 -9.22 16 16 C 0.00 -0.04 7.45 -7.53 -0.06 -0.09 16 17 C -0.15 -1.73 8.47 -26.19 -0.22 -1.95 16 18 C 0.00 -0.01 7.32 -7.53 -0.06 -0.07 16 19 C -0.10 -2.26 5.77 -25.43 -0.15 -2.41 16 20 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 21 H 0.05 1.29 7.85 -51.93 -0.41 0.88 16 22 H 0.06 1.48 7.92 -51.93 -0.41 1.07 16 23 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.06 0.86 7.72 -51.93 -0.40 0.45 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.92 7.79 -51.93 -0.40 0.52 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 1.06 8.04 -51.93 -0.42 0.64 16 32 H 0.05 1.10 7.39 -51.93 -0.38 0.71 16 LS Contribution 255.66 15.07 3.85 3.85 Total: -1.00 -29.00 255.66 -8.77 -37.77 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -5.30 Total: -2.87 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: -1.55 Total: -20.74 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: -0.75 Total: -34.62 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.00 -8.77 -37.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011441.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.988 kcal (2) G-P(sol) polarization free energy of solvation -28.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds