Wall clock time and date at job start Mon Mar 30 2020 01:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99961 * 2 1 4 4 H 1.48501 * 109.46991 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47489 * 299.99972 * 3 2 1 6 6 H 1.48501 * 109.47174 * 60.00394 * 3 2 1 7 7 C 1.37883 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99660 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.05316 * 300.02861 * 9 7 2 11 11 C 1.54257 * 110.03618 * 61.45345 * 9 7 2 12 12 C 1.54889 * 104.31652 * 142.95862 * 11 9 7 13 13 C 1.54891 * 102.74907 * 321.99408 * 12 11 9 14 14 H 1.09003 * 110.48394 * 279.26347 * 13 12 11 15 15 N 1.46891 * 110.48911 * 156.62047 * 13 12 11 16 16 C 1.47481 * 111.00365 * 76.80779 * 15 13 12 17 17 C 1.53519 * 87.93141 * 138.70482 * 16 15 13 18 18 C 1.47486 * 111.00017 * 172.78281 * 15 13 12 19 19 C 1.54225 * 110.14151 * 178.48014 * 9 7 2 20 20 H 0.97002 * 120.00329 * 0.02562 * 1 2 3 21 21 H 1.09001 * 110.48899 * 24.21114 * 11 9 7 22 22 H 1.09000 * 110.48878 * 261.70307 * 11 9 7 23 23 H 1.09006 * 110.75380 * 80.30366 * 12 11 9 24 24 H 1.08996 * 110.75720 * 203.67330 * 12 11 9 25 25 H 1.08993 * 113.47653 * 253.47170 * 16 15 13 26 26 H 1.08998 * 113.47312 * 23.93980 * 16 15 13 27 27 H 1.09004 * 114.16729 * 220.33297 * 17 16 15 28 28 H 1.08999 * 114.16990 * 87.62504 * 17 16 15 29 29 H 1.08997 * 113.47410 * 336.05897 * 18 15 13 30 30 H 1.08999 * 113.47578 * 106.53019 * 18 15 13 31 31 H 1.08999 * 110.00472 * 121.44218 * 19 9 7 32 32 H 1.08997 * 110.06204 * 0.05131 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6200 -2.5672 0.8845 11 6 0.3874 -2.6097 -1.2751 12 6 0.4679 -4.1069 -1.6637 13 6 1.9380 -4.4670 -1.3345 14 1 2.5991 -4.1439 -2.1388 15 7 2.0744 -5.9112 -1.1040 16 6 2.0628 -6.6534 -2.3784 17 6 3.1885 -7.5311 -1.8134 18 6 3.4919 -6.2919 -0.9596 19 6 2.2389 -3.6828 -0.0405 20 1 -0.4851 0.8400 -0.0004 21 1 0.7980 -1.9868 -2.0698 22 1 -0.6433 -2.3256 -1.0630 23 1 -0.2194 -4.7000 -1.0603 24 1 0.2657 -4.2417 -2.7262 25 1 1.1352 -7.1976 -2.5556 26 1 2.3693 -6.0517 -3.2340 27 1 3.9673 -7.7774 -2.5351 28 1 2.8396 -8.3918 -1.2427 29 1 4.1797 -5.5937 -1.4366 30 1 3.7754 -6.5298 0.0657 31 1 2.0874 -4.3236 0.8281 32 1 3.2643 -3.3136 -0.0576 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261011441.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:30 Heat of formation + Delta-G solvation = 1.547652 kcal Electronic energy + Delta-G solvation = -12570.563924 eV Core-core repulsion = 10530.593118 eV Total energy + Delta-G solvation = -2039.970806 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.06720 -38.09290 -34.47858 -30.83113 -29.88710 -27.29619 -26.49128 -25.24235 -21.24207 -20.90688 -20.52347 -18.53596 -17.21171 -16.63075 -16.51718 -15.55383 -14.99591 -14.65820 -14.23707 -13.94330 -13.37847 -13.07567 -12.82504 -12.71262 -12.51155 -12.26477 -11.81948 -11.63255 -11.49371 -11.36484 -11.25938 -11.03808 -10.76198 -10.48966 -9.75316 -8.13170 -6.23479 1.38491 1.39732 1.51569 2.41974 3.13777 3.18052 3.58122 3.91096 3.94961 4.07796 4.32331 4.47176 4.54864 4.68912 4.75362 4.83139 4.85359 4.92717 4.97998 5.00914 5.16023 5.22998 5.31762 5.40498 5.45637 5.50427 5.66859 5.89968 5.96476 6.24394 6.39168 6.88345 7.43763 8.96128 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.069182 B = 0.008652 C = 0.008099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.633805 B = 3235.354374 C = 3456.453505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.009 3.991 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.052 0.948 9 C 0.037 3.963 10 H -0.009 1.009 11 C -0.082 4.082 12 C -0.104 4.104 13 C 0.059 3.941 14 H 0.046 0.954 15 N -0.486 5.486 16 C -0.007 4.007 17 C -0.127 4.127 18 C -0.009 4.009 19 C -0.094 4.094 20 H 0.260 0.740 21 H 0.032 0.968 22 H 0.032 0.968 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.491 -11.668 -5.114 13.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.190 4.190 3 Si 0.781 3.219 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.570 4.570 8 H 0.071 0.929 9 C 0.018 3.982 10 H 0.009 0.991 11 C -0.120 4.120 12 C -0.142 4.142 13 C -0.050 4.050 14 H 0.064 0.936 15 N -0.209 5.209 16 C -0.135 4.135 17 C -0.165 4.165 18 C -0.138 4.138 19 C -0.132 4.132 20 H 0.069 0.931 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.105 0.895 26 H 0.086 0.914 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.850 -11.662 -4.575 13.434 hybrid contribution 0.595 1.675 -0.367 1.815 sum 5.446 -9.988 -4.941 12.403 Atomic orbital electron populations 1.70117 1.07308 1.27155 1.51407 1.25814 0.95711 1.02558 0.94870 0.85549 0.79087 0.79632 0.77677 1.19058 1.20460 1.20590 1.21685 0.92792 0.92015 1.50517 0.92940 1.19284 0.92963 0.92599 0.93375 0.99111 1.22003 0.98634 0.93468 0.97944 1.22444 0.95565 0.96155 1.00062 1.22907 0.96827 0.88763 0.96522 0.93633 1.69034 1.19598 1.06539 1.25695 1.23811 1.00710 0.96669 0.92350 1.23072 0.98040 0.96370 0.98985 1.23790 0.90654 0.97555 1.01802 1.22127 0.98815 0.95861 0.96372 0.93076 0.94928 0.94917 0.91899 0.91565 0.89505 0.91362 0.88794 0.88315 0.91671 0.90114 0.93231 0.93570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.21 12.33 21.45 0.26 -54.95 16 2 C 0.01 0.51 5.32 84.66 0.45 0.97 16 3 Si 0.96 44.64 29.54 68.60 2.03 46.67 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 7 C -0.53 -30.48 8.39 25.60 0.21 -30.26 16 8 H 0.05 2.95 7.34 -2.91 -0.02 2.93 16 9 C 0.04 1.95 2.86 -10.70 -0.03 1.92 16 10 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 11 C -0.08 -4.05 5.36 31.67 0.17 -3.88 16 12 C -0.10 -4.11 6.29 31.89 0.20 -3.91 16 13 C 0.06 2.19 2.13 45.99 0.10 2.29 16 14 H 0.05 1.69 7.66 -2.39 -0.02 1.67 16 15 N -0.49 -15.17 6.11 -896.11 -5.48 -20.65 16 16 C -0.01 -0.16 7.45 83.58 0.62 0.46 16 17 C -0.13 -2.46 8.47 30.94 0.26 -2.20 16 18 C -0.01 -0.23 7.32 83.58 0.61 0.38 16 19 C -0.09 -4.12 5.77 31.44 0.18 -3.94 16 20 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 21 H 0.03 1.69 7.85 -2.39 -0.02 1.67 16 22 H 0.03 1.73 7.92 -2.39 -0.02 1.71 16 23 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 24 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.07 1.60 7.72 -2.39 -0.02 1.59 16 27 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 1.68 7.79 -2.39 -0.02 1.66 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.05 2.13 8.04 -2.39 -0.02 2.11 16 32 H 0.05 2.03 7.39 -2.39 -0.02 2.01 16 Total: -1.00 -62.63 255.66 0.66 -61.97 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 1.06 Total: 5.13 kcal Atomic # 6 Polarization: -40.96 SS G_CDS: 2.78 Total: -38.18 kcal Atomic # 7 Polarization: -70.39 SS G_CDS: -5.21 Total: -75.60 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -62.63 0.66 -61.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011441.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.522 kcal (2) G-P(sol) polarization free energy of solvation -62.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds