Wall clock time and date at job start Mon Mar 30 2020 01:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.90461 * 2 1 4 4 C 1.52995 * 117.49909 * 135.58485 * 3 2 1 5 5 C 1.53001 * 117.49905 * 66.95864 * 3 2 1 6 6 N 1.47901 * 109.91889 * 121.09985 * 2 1 3 7 7 C 1.48533 * 105.82272 * 94.02627 * 6 2 1 8 8 C 1.54933 * 103.22493 * 39.20384 * 7 6 2 9 9 C 1.53995 * 109.92020 * 238.89691 * 2 1 3 10 10 H 1.09004 * 110.30725 * 0.78109 * 9 2 1 11 11 C 1.50696 * 110.31076 * 122.95311 * 9 2 1 12 12 H 1.07998 * 119.99934 * 4.87323 * 11 9 2 13 13 C 1.37873 * 119.99984 * 184.87469 * 11 9 2 14 14 N 1.31513 * 119.99928 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99923 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47018 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47340 * 119.99849 * 15 13 11 18 18 H 1.48500 * 109.47027 * 239.99913 * 15 13 11 19 19 H 1.08996 * 109.47316 * 60.00291 * 1 2 3 20 20 H 1.08999 * 109.47091 * 299.99762 * 1 2 3 21 21 H 1.09008 * 109.46498 * 180.02562 * 1 2 3 22 22 H 1.09004 * 115.54465 * 281.29187 * 3 2 1 23 23 H 1.08992 * 117.50233 * 359.97438 * 4 3 2 24 24 H 1.08999 * 117.49831 * 145.02506 * 4 3 2 25 25 H 1.09001 * 117.49656 * 214.97674 * 5 3 2 26 26 H 1.08996 * 117.50135 * 0.02562 * 5 3 2 27 27 H 1.00905 * 111.00098 * 214.54450 * 6 2 1 28 28 H 1.08998 * 110.67197 * 157.64547 * 7 6 2 29 29 H 1.09006 * 110.66706 * 280.77365 * 7 6 2 30 30 H 1.09005 * 110.72450 * 80.94829 * 8 7 6 31 31 H 1.09005 * 110.72757 * 204.05136 * 8 7 6 32 32 H 0.97001 * 119.99532 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0509 1.4386 0.0000 4 6 3.2029 1.7728 0.9498 5 6 1.7920 2.2837 1.2489 6 7 2.0339 -0.7183 1.1907 7 6 2.2662 -2.1179 0.7511 8 6 2.8537 -1.9494 -0.6726 9 6 2.0547 -0.7479 -1.2397 10 1 1.2225 -1.0996 -1.8496 11 6 2.9556 0.1488 -2.0491 12 1 3.2088 1.1326 -1.6827 13 6 3.4567 -0.2869 -3.2574 14 7 3.1488 -1.4852 -3.7034 15 14 4.5741 0.8243 -4.2604 16 1 4.7657 2.1107 -3.5437 17 1 5.8897 0.1622 -4.4503 18 1 3.9548 1.0837 -5.5849 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3632 -1.0278 0.0005 22 1 2.0299 1.9461 -0.9645 23 1 3.5894 0.9680 1.5749 24 1 3.9401 2.5004 0.6103 25 1 1.6011 3.3473 1.1061 26 1 1.2509 1.8147 2.0707 27 1 2.8866 -0.2999 1.5314 28 1 2.9823 -2.6133 1.4067 29 1 1.3276 -2.6712 0.7170 30 1 3.9173 -1.7155 -0.6258 31 1 2.6832 -2.8459 -1.2688 32 1 3.5016 -1.7918 -4.5533 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261155093.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:08 Heat of formation + Delta-G solvation = 32.898099 kcal Electronic energy + Delta-G solvation = -13116.657289 eV Core-core repulsion = 11078.045940 eV Total energy + Delta-G solvation = -2038.611349 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.12193 -35.06389 -32.65656 -30.12279 -28.76490 -26.06787 -23.39894 -21.92150 -21.61152 -19.87671 -17.98527 -16.25801 -15.70579 -14.87784 -14.21709 -13.69046 -12.87307 -12.79203 -12.49544 -11.88470 -11.64699 -11.36035 -11.07763 -10.90956 -10.71363 -10.47319 -10.37806 -10.26217 -9.71534 -9.51044 -9.33417 -8.93041 -8.54021 -8.38185 -7.66997 -6.00318 -4.01569 3.28278 3.37044 3.39543 4.43890 4.54705 5.08827 5.32418 5.39884 5.65694 5.70426 5.82091 6.10538 6.18304 6.27410 6.35626 6.40066 6.44598 6.49754 6.67787 6.70738 6.78810 6.92434 6.97721 7.16306 7.31380 7.55112 7.63396 7.93895 8.05163 8.16814 8.48891 9.02283 9.62756 11.10175 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.035004 B = 0.015202 C = 0.012484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.721285 B = 1841.366888 C = 2242.251350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.124 3.876 3 C -0.110 4.110 4 C -0.185 4.185 5 C -0.196 4.196 6 N -0.678 5.678 7 C 0.033 3.967 8 C -0.129 4.129 9 C 0.038 3.962 10 H 0.037 0.963 11 C -0.514 4.514 12 H 0.073 0.927 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.885 3.115 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.285 1.285 19 H 0.052 0.948 20 H 0.044 0.956 21 H 0.045 0.955 22 H 0.120 0.880 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.329 0.671 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.506 3.010 6.853 7.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.033 3.967 3 C -0.129 4.129 4 C -0.223 4.223 5 C -0.233 4.233 6 N -0.311 5.311 7 C -0.096 4.096 8 C -0.169 4.169 9 C 0.018 3.982 10 H 0.055 0.945 11 C -0.552 4.552 12 H 0.090 0.910 13 C -0.140 4.140 14 N -0.529 5.529 15 Si 0.713 3.287 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.212 1.212 19 H 0.071 0.929 20 H 0.063 0.937 21 H 0.064 0.936 22 H 0.138 0.862 23 H 0.109 0.891 24 H 0.103 0.897 25 H 0.098 0.902 26 H 0.109 0.891 27 H 0.150 0.850 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.118 2.791 7.059 7.881 hybrid contribution 1.617 0.515 -1.299 2.137 sum -0.502 3.306 5.760 6.661 Atomic orbital electron populations 1.21611 0.95022 1.00525 1.00178 1.21287 0.93851 0.90912 0.90613 1.22590 0.99959 0.96190 0.94135 1.22875 0.91642 1.02998 1.04790 1.22994 0.99422 0.99053 1.01862 1.63125 1.33984 1.02884 1.31103 1.23114 0.99152 0.90805 0.96548 1.23111 0.99716 1.00463 0.93600 1.19891 0.95325 0.91834 0.91162 0.94495 1.21555 1.28604 1.01625 1.03425 0.90955 1.25028 0.96414 0.94935 0.97670 1.69994 1.44865 1.17614 1.20422 0.86652 0.80725 0.81020 0.80305 1.19800 1.21238 1.21159 0.92946 0.93739 0.93564 0.86230 0.89107 0.89746 0.90183 0.89140 0.84964 0.92900 0.91791 0.93023 0.92551 0.93290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 8.51 37.16 0.32 -1.87 16 2 C 0.12 2.54 0.95 -130.53 -0.12 2.42 16 3 C -0.11 -2.14 3.40 -90.62 -0.31 -2.45 16 4 C -0.19 -3.21 9.71 -26.73 -0.26 -3.47 16 5 C -0.20 -3.20 9.74 -26.73 -0.26 -3.46 16 6 N -0.68 -12.99 6.82 -96.47 -0.66 -13.65 16 7 C 0.03 0.65 7.54 -1.90 -0.01 0.63 16 8 C -0.13 -3.00 6.10 -24.64 -0.15 -3.15 16 9 C 0.04 0.92 2.44 -90.18 -0.22 0.70 16 10 H 0.04 1.00 7.69 -51.93 -0.40 0.60 16 11 C -0.51 -13.54 7.53 -34.44 -0.26 -13.80 16 12 H 0.07 1.85 4.82 -52.49 -0.25 1.60 16 13 C 0.06 1.67 5.38 -17.82 -0.10 1.57 16 14 N -0.89 -25.58 12.90 55.43 0.72 -24.87 16 15 Si 0.88 21.15 29.54 -169.99 -5.02 16.13 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 20 H 0.04 0.77 7.86 -51.93 -0.41 0.36 16 21 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 22 H 0.12 2.53 6.28 -51.93 -0.33 2.20 16 23 H 0.09 1.53 5.54 -51.93 -0.29 1.24 16 24 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 25 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.09 1.46 8.09 -51.93 -0.42 1.04 16 27 H 0.33 6.09 5.23 -39.29 -0.21 5.88 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 1.26 7.86 -51.93 -0.41 0.86 16 31 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 250.55 15.07 3.78 3.78 Total: -1.00 -27.51 250.55 -7.36 -34.87 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -4.80 Total: 6.61 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: -1.37 Total: -22.87 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.06 Total: -38.52 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -27.51 -7.36 -34.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261155093.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.769 kcal (2) G-P(sol) polarization free energy of solvation -27.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds