Wall clock time and date at job start Mon Mar 30 2020 01:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.90461 * 2 1 4 4 C 1.52995 * 117.49909 * 135.58485 * 3 2 1 5 5 C 1.53001 * 117.49905 * 66.95864 * 3 2 1 6 6 N 1.47901 * 109.91889 * 121.09985 * 2 1 3 7 7 C 1.48533 * 105.82272 * 94.02627 * 6 2 1 8 8 C 1.54933 * 103.22493 * 39.20384 * 7 6 2 9 9 C 1.53995 * 109.92020 * 238.89691 * 2 1 3 10 10 H 1.09004 * 110.30725 * 0.78109 * 9 2 1 11 11 C 1.50696 * 110.31076 * 122.95311 * 9 2 1 12 12 H 1.07998 * 119.99934 * 4.87323 * 11 9 2 13 13 C 1.37873 * 119.99984 * 184.87469 * 11 9 2 14 14 N 1.31513 * 119.99928 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99923 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47018 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47340 * 119.99849 * 15 13 11 18 18 H 1.48500 * 109.47027 * 239.99913 * 15 13 11 19 19 H 1.08996 * 109.47316 * 60.00291 * 1 2 3 20 20 H 1.08999 * 109.47091 * 299.99762 * 1 2 3 21 21 H 1.09008 * 109.46498 * 180.02562 * 1 2 3 22 22 H 1.09004 * 115.54465 * 281.29187 * 3 2 1 23 23 H 1.08992 * 117.50233 * 359.97438 * 4 3 2 24 24 H 1.08999 * 117.49831 * 145.02506 * 4 3 2 25 25 H 1.09001 * 117.49656 * 214.97674 * 5 3 2 26 26 H 1.08996 * 117.50135 * 0.02562 * 5 3 2 27 27 H 1.00905 * 111.00098 * 214.54450 * 6 2 1 28 28 H 1.08998 * 110.67197 * 157.64547 * 7 6 2 29 29 H 1.09006 * 110.66706 * 280.77365 * 7 6 2 30 30 H 1.09005 * 110.72450 * 80.94829 * 8 7 6 31 31 H 1.09005 * 110.72757 * 204.05136 * 8 7 6 32 32 H 0.97001 * 119.99532 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0509 1.4386 0.0000 4 6 3.2029 1.7728 0.9498 5 6 1.7920 2.2837 1.2489 6 7 2.0339 -0.7183 1.1907 7 6 2.2662 -2.1179 0.7511 8 6 2.8537 -1.9494 -0.6726 9 6 2.0547 -0.7479 -1.2397 10 1 1.2225 -1.0996 -1.8496 11 6 2.9556 0.1488 -2.0491 12 1 3.2088 1.1326 -1.6827 13 6 3.4567 -0.2869 -3.2574 14 7 3.1488 -1.4852 -3.7034 15 14 4.5741 0.8243 -4.2604 16 1 4.7657 2.1107 -3.5437 17 1 5.8897 0.1622 -4.4503 18 1 3.9548 1.0837 -5.5849 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3632 -1.0278 0.0005 22 1 2.0299 1.9461 -0.9645 23 1 3.5894 0.9680 1.5749 24 1 3.9401 2.5004 0.6103 25 1 1.6011 3.3473 1.1061 26 1 1.2509 1.8147 2.0707 27 1 2.8866 -0.2999 1.5314 28 1 2.9823 -2.6133 1.4067 29 1 1.3276 -2.6712 0.7170 30 1 3.9173 -1.7155 -0.6258 31 1 2.6832 -2.8459 -1.2688 32 1 3.5016 -1.7918 -4.5533 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261155093.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:07 Heat of formation + Delta-G solvation = 16.149479 kcal Electronic energy + Delta-G solvation = -13117.383563 eV Core-core repulsion = 11078.045940 eV Total energy + Delta-G solvation = -2039.337623 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.73643 -36.60032 -34.67021 -31.72980 -30.62495 -27.82673 -25.27141 -23.44353 -22.96689 -21.68864 -19.72360 -17.89960 -17.51822 -16.67353 -15.94287 -15.41405 -14.68870 -14.39551 -14.04304 -13.53871 -13.33768 -13.13480 -12.91703 -12.54920 -12.35976 -12.27407 -11.96079 -11.89219 -11.54663 -11.10603 -10.98479 -10.60214 -10.47430 -10.32537 -9.31219 -8.09628 -6.15520 1.37375 1.40336 1.50072 2.43587 3.15043 3.23042 3.49858 3.96720 4.17447 4.28003 4.30211 4.53885 4.58000 4.76782 4.85010 4.89389 4.89589 5.00212 5.04536 5.19615 5.24403 5.36774 5.40854 5.53081 5.55792 5.68203 5.69957 5.91956 6.23217 6.40336 6.67920 6.98075 7.51728 9.01015 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.035004 B = 0.015202 C = 0.012484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.721285 B = 1841.366888 C = 2242.251350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.128 3.872 3 C -0.140 4.140 4 C -0.184 4.184 5 C -0.165 4.165 6 N -0.665 5.665 7 C 0.044 3.956 8 C -0.125 4.125 9 C 0.029 3.971 10 H -0.002 1.002 11 C -0.516 4.516 12 H 0.080 0.920 13 C 0.006 3.994 14 N -0.927 5.927 15 Si 0.946 3.054 16 H -0.262 1.262 17 H -0.287 1.287 18 H -0.286 1.286 19 H 0.045 0.955 20 H 0.065 0.935 21 H 0.041 0.959 22 H 0.097 0.903 23 H 0.097 0.903 24 H 0.091 0.909 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.335 0.665 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.293 4.345 8.611 9.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.037 3.963 3 C -0.159 4.159 4 C -0.221 4.221 5 C -0.202 4.202 6 N -0.298 5.298 7 C -0.085 4.085 8 C -0.164 4.164 9 C 0.009 3.991 10 H 0.016 0.984 11 C -0.554 4.554 12 H 0.098 0.902 13 C -0.192 4.192 14 N -0.568 5.568 15 Si 0.772 3.228 16 H -0.186 1.186 17 H -0.213 1.213 18 H -0.212 1.212 19 H 0.064 0.936 20 H 0.084 0.916 21 H 0.060 0.940 22 H 0.115 0.885 23 H 0.115 0.885 24 H 0.109 0.891 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.157 0.843 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.905 4.144 8.835 9.943 hybrid contribution 1.524 0.093 -1.842 2.392 sum -0.381 4.237 6.993 8.186 Atomic orbital electron populations 1.21563 0.93972 1.00516 1.00878 1.21141 0.94719 0.91410 0.88989 1.22374 1.03068 0.95824 0.94643 1.22969 0.92125 1.03310 1.03732 1.23017 0.98153 0.99582 0.99400 1.63138 1.34246 1.02505 1.29897 1.23069 0.99847 0.91389 0.94211 1.22946 0.98567 0.98898 0.96021 1.19892 0.94024 0.92603 0.92545 0.98419 1.21974 1.27868 1.02056 1.03469 0.90202 1.25802 0.98103 0.96165 0.99110 1.70133 1.46470 1.19375 1.20815 0.85683 0.78671 0.79658 0.78744 1.18581 1.21338 1.21229 0.93621 0.91571 0.93990 0.88540 0.88544 0.89075 0.88229 0.88287 0.84297 0.90152 0.91143 0.94846 0.95056 0.93600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.08 8.51 71.98 0.61 -3.46 16 2 C 0.13 5.12 0.95 3.67 0.00 5.12 16 3 C -0.14 -5.20 3.40 -10.79 -0.04 -5.23 16 4 C -0.18 -5.83 9.71 30.59 0.30 -5.53 16 5 C -0.16 -4.76 9.74 30.60 0.30 -4.46 16 6 N -0.67 -23.89 6.82 -459.12 -3.13 -27.02 16 7 C 0.04 1.65 7.54 86.65 0.65 2.30 16 8 C -0.12 -5.85 6.10 31.95 0.20 -5.66 16 9 C 0.03 1.45 2.44 -10.51 -0.03 1.43 16 10 H 0.00 -0.14 7.69 -2.39 -0.02 -0.16 16 11 C -0.52 -27.48 7.53 25.60 0.19 -27.28 16 12 H 0.08 4.08 4.82 -2.91 -0.01 4.06 16 13 C 0.01 0.32 5.38 84.65 0.46 0.77 16 14 N -0.93 -54.96 12.90 21.45 0.28 -54.68 16 15 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 16 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 17 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 18 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 19 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 20 H 0.07 2.11 7.86 -2.39 -0.02 2.09 16 21 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 22 H 0.10 4.01 6.28 -2.38 -0.01 4.00 16 23 H 0.10 2.94 5.54 -2.39 -0.01 2.93 16 24 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 25 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.10 2.75 8.09 -2.39 -0.02 2.73 16 27 H 0.34 11.41 5.23 -89.69 -0.47 10.94 16 28 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 30 H 0.03 1.65 7.86 -2.38 -0.02 1.63 16 31 H 0.03 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -59.13 250.55 2.45 -56.69 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.63 Total: 21.14 kcal Atomic # 6 Polarization: -44.66 SS G_CDS: 2.65 Total: -42.01 kcal Atomic # 7 Polarization: -78.85 SS G_CDS: -2.85 Total: -81.70 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -59.13 2.45 -56.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261155093.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.839 kcal (2) G-P(sol) polarization free energy of solvation -59.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds