Wall clock time and date at job start Mon Mar 30 2020 01:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 110.06269 * 2 1 4 4 C 1.52998 * 117.49830 * 14.83279 * 3 2 1 5 5 C 1.53000 * 117.49974 * 306.20883 * 3 2 1 6 6 N 1.47901 * 109.91777 * 238.80219 * 2 1 3 7 7 C 1.48534 * 105.82282 * 215.31199 * 6 2 1 8 8 C 1.54940 * 103.22395 * 39.20468 * 7 6 2 9 9 C 1.53991 * 109.92278 * 121.20787 * 2 1 3 10 10 H 1.09001 * 110.30829 * 239.49804 * 9 2 1 11 11 C 1.50703 * 110.30678 * 1.66045 * 9 2 1 12 12 H 1.08002 * 119.99999 * 357.17178 * 11 9 2 13 13 C 1.37876 * 119.99568 * 177.16813 * 11 9 2 14 14 N 1.31511 * 120.00436 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 119.99620 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47177 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47143 * 120.00169 * 15 13 11 18 18 H 1.48500 * 109.47378 * 240.00388 * 15 13 11 19 19 H 1.09005 * 109.47118 * 299.48957 * 1 2 3 20 20 H 1.08998 * 109.47874 * 59.49467 * 1 2 3 21 21 H 1.09002 * 109.47170 * 179.49620 * 1 2 3 22 22 H 1.08999 * 115.55204 * 160.53799 * 3 2 1 23 23 H 1.09001 * 117.50204 * 359.97438 * 4 3 2 24 24 H 1.09008 * 117.49944 * 145.01925 * 4 3 2 25 25 H 1.09002 * 117.49507 * 214.97631 * 5 3 2 26 26 H 1.08993 * 117.49896 * 359.97438 * 5 3 2 27 27 H 1.00896 * 111.00259 * 94.79438 * 6 2 1 28 28 H 1.08993 * 110.66573 * 280.77531 * 7 6 2 29 29 H 1.08994 * 110.66829 * 157.63714 * 7 6 2 30 30 H 1.09000 * 110.72261 * 204.23259 * 8 7 6 31 31 H 1.08998 * 110.87725 * 81.01518 * 8 7 6 32 32 H 0.96996 * 119.99892 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0548 1.4372 0.0000 4 6 1.0648 2.5508 0.3474 5 6 1.5441 2.3758 -1.0950 6 7 2.0338 -0.7203 -1.1894 7 6 3.2681 -1.4183 -0.7474 8 6 2.9060 -1.9117 0.6760 9 6 2.0547 -0.7501 1.2383 10 1 2.6714 -0.0895 1.8476 11 6 0.9047 -1.2894 2.0493 12 1 -0.1119 -1.0819 1.7493 13 6 1.1504 -2.0477 3.1743 14 7 2.3882 -2.3001 3.5398 15 14 -0.2751 -2.7167 4.1793 16 1 -1.5577 -2.2948 3.5610 17 1 -0.2055 -4.1998 4.2107 18 1 -0.1953 -2.1879 5.5646 19 1 -0.3633 0.5059 0.8946 20 1 -0.3635 0.5216 -0.8854 21 1 -0.3633 -1.0276 -0.0090 22 1 3.0870 1.5607 0.3276 23 1 0.0395 2.2597 0.5756 24 1 1.4457 3.4073 0.9039 25 1 2.2403 3.1171 -1.4874 26 1 0.8346 1.9694 -1.8157 27 1 2.2310 -0.0796 -1.9435 28 1 4.1096 -0.7265 -0.7123 29 1 3.4888 -2.2613 -1.4022 30 1 3.8053 -2.0556 1.2747 31 1 2.3225 -2.8312 0.6316 32 1 2.5610 -2.8333 4.3315 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261155094.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:10 Heat of formation + Delta-G solvation = 27.067054 kcal Electronic energy + Delta-G solvation = -13027.035998 eV Core-core repulsion = 10988.171796 eV Total energy + Delta-G solvation = -2038.864202 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.03295 -35.41769 -32.64094 -30.07488 -28.90097 -25.11124 -24.46111 -21.99322 -21.49544 -19.66141 -17.88870 -16.19221 -15.86945 -14.61081 -14.44498 -13.87018 -13.72297 -12.63783 -12.15725 -11.86000 -11.55592 -11.20667 -10.90160 -10.87155 -10.61757 -10.57313 -10.27881 -10.24006 -9.79084 -9.62885 -9.52792 -8.90782 -8.54815 -8.33462 -7.69252 -5.94784 -3.94923 3.33451 3.41714 3.45197 4.25990 4.49533 5.12507 5.21248 5.39599 5.43852 5.55785 5.77821 5.96493 6.05799 6.12935 6.25510 6.34937 6.37472 6.53508 6.55702 6.66847 6.83308 6.87484 7.21262 7.33187 7.35409 7.57650 7.71412 7.99093 8.11785 8.21789 8.52540 9.05623 9.68542 11.15742 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.039933 B = 0.013369 C = 0.011486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.002979 B = 2093.898003 C = 2437.208178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.127 3.873 3 C -0.158 4.158 4 C -0.173 4.173 5 C -0.192 4.192 6 N -0.660 5.660 7 C 0.030 3.970 8 C -0.091 4.091 9 C 0.055 3.945 10 H 0.028 0.972 11 C -0.511 4.511 12 H 0.073 0.927 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.887 3.113 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.286 1.286 19 H 0.060 0.940 20 H 0.022 0.978 21 H 0.066 0.934 22 H 0.093 0.907 23 H 0.101 0.899 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.318 0.682 28 H 0.023 0.977 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.505 5.584 -6.584 8.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.036 3.964 3 C -0.178 4.178 4 C -0.211 4.211 5 C -0.229 4.229 6 N -0.287 5.287 7 C -0.099 4.099 8 C -0.130 4.130 9 C 0.036 3.964 10 H 0.046 0.954 11 C -0.549 4.549 12 H 0.091 0.909 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.715 3.285 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.213 1.213 19 H 0.078 0.922 20 H 0.041 0.959 21 H 0.085 0.915 22 H 0.111 0.889 23 H 0.120 0.880 24 H 0.102 0.898 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.132 0.868 28 H 0.041 0.959 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.866 4.890 -6.419 8.116 hybrid contribution 0.140 0.396 0.757 0.866 sum -0.726 5.286 -5.662 7.780 Atomic orbital electron populations 1.21766 0.94550 1.01835 0.98479 1.21333 0.95077 0.87885 0.92085 1.23117 0.98630 0.93620 1.02402 1.22970 1.00611 1.00241 0.97273 1.22920 1.04257 1.03342 0.92351 1.63228 1.27940 1.29791 1.07723 1.23128 0.90682 0.96975 0.99145 1.22393 0.99638 1.00215 0.90757 1.19473 0.94933 0.92042 0.89912 0.95380 1.21580 0.93293 1.31425 1.08624 0.90903 1.25002 0.95263 0.96442 0.97454 1.69994 1.18391 1.39431 1.25410 0.86618 0.83068 0.78698 0.80113 1.19756 1.21226 1.21281 0.92157 0.95879 0.91520 0.88923 0.88039 0.89794 0.89909 0.88953 0.86782 0.95885 0.92097 0.92522 0.92122 0.93350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.20 6.00 37.15 0.22 -1.97 16 2 C 0.13 2.61 0.98 -130.53 -0.13 2.48 16 3 C -0.16 -2.86 4.92 -90.62 -0.45 -3.30 16 4 C -0.17 -2.79 9.69 -26.73 -0.26 -3.05 16 5 C -0.19 -2.85 9.36 -26.73 -0.25 -3.10 16 6 N -0.66 -12.85 7.01 -96.47 -0.68 -13.53 16 7 C 0.03 0.59 7.54 -1.90 -0.01 0.58 16 8 C -0.09 -2.19 5.58 -24.87 -0.14 -2.33 16 9 C 0.06 1.37 2.56 -90.41 -0.23 1.14 16 10 H 0.03 0.77 7.62 -51.93 -0.40 0.37 16 11 C -0.51 -13.78 7.53 -34.44 -0.26 -14.04 16 12 H 0.07 1.92 4.70 -52.49 -0.25 1.67 16 13 C 0.06 1.64 5.33 -17.82 -0.09 1.55 16 14 N -0.89 -25.77 12.42 55.43 0.69 -25.09 16 15 Si 0.89 21.43 29.54 -169.99 -5.02 16.40 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H 0.06 1.23 5.85 -51.93 -0.30 0.93 16 20 H 0.02 0.40 6.96 -51.93 -0.36 0.04 16 21 H 0.07 1.46 7.01 -51.93 -0.36 1.10 16 22 H 0.09 1.73 8.05 -51.93 -0.42 1.31 16 23 H 0.10 1.66 5.95 -51.93 -0.31 1.35 16 24 H 0.08 1.24 8.14 -51.92 -0.42 0.81 16 25 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.09 1.35 7.25 -51.93 -0.38 0.97 16 27 H 0.32 5.46 7.99 -39.29 -0.31 5.14 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.42 8.04 -51.93 -0.42 1.00 16 31 H 0.06 1.57 7.85 -51.93 -0.41 1.17 16 32 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 247.96 15.07 3.74 3.74 Total: -1.00 -28.01 247.96 -7.61 -35.62 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -4.74 Total: 4.89 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -1.60 Total: -22.04 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.01 Total: -38.62 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -28.01 -7.61 -35.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261155094.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.692 kcal (2) G-P(sol) polarization free energy of solvation -28.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds