Wall clock time and date at job start Mon Mar 30 2020 01:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 110.06269 * 2 1 4 4 C 1.52998 * 117.49830 * 14.83279 * 3 2 1 5 5 C 1.53000 * 117.49974 * 306.20883 * 3 2 1 6 6 N 1.47901 * 109.91777 * 238.80219 * 2 1 3 7 7 C 1.48534 * 105.82282 * 215.31199 * 6 2 1 8 8 C 1.54940 * 103.22395 * 39.20468 * 7 6 2 9 9 C 1.53991 * 109.92278 * 121.20787 * 2 1 3 10 10 H 1.09001 * 110.30829 * 239.49804 * 9 2 1 11 11 C 1.50703 * 110.30678 * 1.66045 * 9 2 1 12 12 H 1.08002 * 119.99999 * 357.17178 * 11 9 2 13 13 C 1.37876 * 119.99568 * 177.16813 * 11 9 2 14 14 N 1.31511 * 120.00436 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 119.99620 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47177 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47143 * 120.00169 * 15 13 11 18 18 H 1.48500 * 109.47378 * 240.00388 * 15 13 11 19 19 H 1.09005 * 109.47118 * 299.48957 * 1 2 3 20 20 H 1.08998 * 109.47874 * 59.49467 * 1 2 3 21 21 H 1.09002 * 109.47170 * 179.49620 * 1 2 3 22 22 H 1.08999 * 115.55204 * 160.53799 * 3 2 1 23 23 H 1.09001 * 117.50204 * 359.97438 * 4 3 2 24 24 H 1.09008 * 117.49944 * 145.01925 * 4 3 2 25 25 H 1.09002 * 117.49507 * 214.97631 * 5 3 2 26 26 H 1.08993 * 117.49896 * 359.97438 * 5 3 2 27 27 H 1.00896 * 111.00259 * 94.79438 * 6 2 1 28 28 H 1.08993 * 110.66573 * 280.77531 * 7 6 2 29 29 H 1.08994 * 110.66829 * 157.63714 * 7 6 2 30 30 H 1.09000 * 110.72261 * 204.23259 * 8 7 6 31 31 H 1.08998 * 110.87725 * 81.01518 * 8 7 6 32 32 H 0.96996 * 119.99892 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0548 1.4372 0.0000 4 6 1.0648 2.5508 0.3474 5 6 1.5441 2.3758 -1.0950 6 7 2.0338 -0.7203 -1.1894 7 6 3.2681 -1.4183 -0.7474 8 6 2.9060 -1.9117 0.6760 9 6 2.0547 -0.7501 1.2383 10 1 2.6714 -0.0895 1.8476 11 6 0.9047 -1.2894 2.0493 12 1 -0.1119 -1.0819 1.7493 13 6 1.1504 -2.0477 3.1743 14 7 2.3882 -2.3001 3.5398 15 14 -0.2751 -2.7167 4.1793 16 1 -1.5577 -2.2948 3.5610 17 1 -0.2055 -4.1998 4.2107 18 1 -0.1953 -2.1879 5.5646 19 1 -0.3633 0.5059 0.8946 20 1 -0.3635 0.5216 -0.8854 21 1 -0.3633 -1.0276 -0.0090 22 1 3.0870 1.5607 0.3276 23 1 0.0395 2.2597 0.5756 24 1 1.4457 3.4073 0.9039 25 1 2.2403 3.1171 -1.4874 26 1 0.8346 1.9694 -1.8157 27 1 2.2310 -0.0796 -1.9435 28 1 4.1096 -0.7265 -0.7123 29 1 3.4888 -2.2613 -1.4022 30 1 3.8053 -2.0556 1.2747 31 1 2.3225 -2.8312 0.6316 32 1 2.5610 -2.8333 4.3315 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261155094.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:10 Heat of formation + Delta-G solvation = 9.343283 kcal Electronic energy + Delta-G solvation = -13027.804558 eV Core-core repulsion = 10988.171796 eV Total energy + Delta-G solvation = -2039.632762 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.62200 -36.91802 -34.65844 -31.77904 -30.75348 -26.90050 -26.31422 -23.28683 -23.00719 -21.50181 -19.55400 -18.06641 -17.54312 -16.48884 -16.02155 -15.52940 -15.24005 -14.34285 -14.08727 -13.52492 -13.35752 -12.83238 -12.65462 -12.51005 -12.37590 -12.28271 -11.85675 -11.78253 -11.60928 -11.44085 -11.00315 -10.66601 -10.48776 -10.42553 -9.24485 -8.07365 -6.13053 1.40041 1.42520 1.53124 2.46361 2.96113 3.25039 3.60001 3.88549 4.05669 4.23572 4.26132 4.43624 4.48366 4.71893 4.72954 4.83980 4.94230 4.99083 5.10123 5.17974 5.27780 5.29733 5.36145 5.48944 5.66046 5.69221 5.77095 5.92082 6.26288 6.44513 6.77628 6.95815 7.53739 9.02981 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.039933 B = 0.013369 C = 0.011486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.002979 B = 2093.898003 C = 2437.208178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.131 3.869 3 C -0.185 4.185 4 C -0.177 4.177 5 C -0.157 4.157 6 N -0.660 5.660 7 C 0.043 3.957 8 C -0.088 4.088 9 C 0.047 3.953 10 H -0.007 1.007 11 C -0.521 4.521 12 H 0.077 0.923 13 C 0.006 3.994 14 N -0.926 5.926 15 Si 0.948 3.052 16 H -0.263 1.263 17 H -0.286 1.286 18 H -0.284 1.284 19 H 0.052 0.948 20 H 0.052 0.948 21 H 0.042 0.958 22 H 0.081 0.919 23 H 0.097 0.903 24 H 0.096 0.904 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.336 0.664 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.033 0.967 31 H 0.032 0.968 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.386 6.733 -8.139 10.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.041 3.959 3 C -0.205 4.205 4 C -0.214 4.214 5 C -0.194 4.194 6 N -0.289 5.289 7 C -0.087 4.087 8 C -0.127 4.127 9 C 0.028 3.972 10 H 0.011 0.989 11 C -0.559 4.559 12 H 0.095 0.905 13 C -0.191 4.191 14 N -0.567 5.567 15 Si 0.774 3.226 16 H -0.187 1.187 17 H -0.212 1.212 18 H -0.210 1.210 19 H 0.071 0.929 20 H 0.070 0.930 21 H 0.061 0.939 22 H 0.099 0.901 23 H 0.116 0.884 24 H 0.114 0.886 25 H 0.126 0.874 26 H 0.120 0.880 27 H 0.153 0.847 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.756 6.055 -7.994 10.181 hybrid contribution 0.438 0.054 1.245 1.321 sum -1.318 6.109 -6.749 9.198 Atomic orbital electron populations 1.21642 0.94135 1.00606 0.99492 1.21104 0.95293 0.89138 0.90378 1.22886 0.98493 0.92722 1.06403 1.23065 0.99822 0.99582 0.98954 1.22999 1.03522 1.01465 0.91400 1.63168 1.27628 1.30328 1.07799 1.22998 0.91296 0.97911 0.96461 1.22188 0.98089 0.98911 0.93534 1.19447 0.94126 0.92167 0.91450 0.98851 1.21998 0.94212 1.30837 1.08825 0.90476 1.25776 0.97496 0.97051 0.98800 1.70129 1.20255 1.40383 1.25906 0.85655 0.80544 0.77812 0.78586 1.18670 1.21231 1.21045 0.92926 0.92960 0.93863 0.90115 0.88432 0.88553 0.87445 0.87984 0.84702 0.94482 0.90096 0.94840 0.94906 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.94 6.00 71.98 0.43 -3.51 16 2 C 0.13 5.28 0.98 3.67 0.00 5.29 16 3 C -0.19 -6.37 4.92 -10.79 -0.05 -6.42 16 4 C -0.18 -5.25 9.69 30.59 0.30 -4.95 16 5 C -0.16 -4.03 9.36 30.60 0.29 -3.75 16 6 N -0.66 -24.38 7.01 -459.14 -3.22 -27.60 16 7 C 0.04 1.63 7.54 86.65 0.65 2.28 16 8 C -0.09 -4.35 5.58 31.80 0.18 -4.17 16 9 C 0.05 2.39 2.56 -10.66 -0.03 2.36 16 10 H -0.01 -0.38 7.62 -2.39 -0.02 -0.40 16 11 C -0.52 -28.60 7.53 25.60 0.19 -28.41 16 12 H 0.08 4.09 4.70 -2.91 -0.01 4.07 16 13 C 0.01 0.35 5.33 84.65 0.45 0.80 16 14 N -0.93 -55.18 12.42 21.45 0.27 -54.91 16 15 Si 0.95 44.55 29.54 68.60 2.03 46.58 16 16 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 17 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 18 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 19 H 0.05 2.10 5.85 -2.38 -0.01 2.08 16 20 H 0.05 1.70 6.96 -2.39 -0.02 1.68 16 21 H 0.04 1.86 7.01 -2.39 -0.02 1.84 16 22 H 0.08 2.96 8.05 -2.39 -0.02 2.94 16 23 H 0.10 2.98 5.95 -2.39 -0.01 2.96 16 24 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 25 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.10 2.47 7.25 -2.39 -0.02 2.45 16 27 H 0.34 10.40 7.99 -89.70 -0.72 9.69 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 2.79 8.14 -2.39 -0.02 2.78 16 30 H 0.03 1.74 8.04 -2.39 -0.02 1.72 16 31 H 0.03 1.75 7.85 -2.39 -0.02 1.73 16 32 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -60.99 247.96 1.87 -59.12 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.39 Total: 17.28 kcal Atomic # 6 Polarization: -42.87 SS G_CDS: 2.41 Total: -40.46 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -2.95 Total: -82.51 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -60.99 1.87 -59.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261155094.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.465 kcal (2) G-P(sol) polarization free energy of solvation -60.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds