Wall clock time and date at job start Mon Mar 30 2020 01:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00006 * 2 1 4 4 H 1.48497 * 109.47141 * 270.00543 * 3 2 1 5 5 H 1.48502 * 109.47081 * 30.00206 * 3 2 1 6 6 H 1.48492 * 109.47083 * 149.99795 * 3 2 1 7 7 C 1.37874 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99951 * 180.02562 * 7 2 1 9 9 C 1.50886 * 120.00171 * 359.97438 * 7 2 1 10 10 H 1.09317 * 108.80892 * 299.20103 * 9 7 2 11 11 C 1.51481 * 109.10253 * 57.90355 * 9 7 2 12 12 C 1.51797 * 111.32644 * 205.86472 * 11 9 7 13 13 N 1.43911 * 115.42587 * 279.31099 * 12 11 9 14 14 C 1.48035 * 109.03255 * 310.59899 * 13 12 11 15 15 C 1.54041 * 106.42902 * 88.46126 * 14 13 12 16 16 C 1.51598 * 105.33117 * 11.29756 * 15 14 13 17 17 H 1.10332 * 106.96592 * 123.44390 * 16 15 14 18 18 C 1.49596 * 108.12130 * 67.10272 * 13 12 11 19 19 C 1.51421 * 116.93548 * 243.91091 * 16 15 14 20 20 H 0.97001 * 120.00449 * 0.02562 * 1 2 3 21 21 H 1.09735 * 107.88193 * 323.78054 * 11 9 7 22 22 H 1.07730 * 110.81529 * 82.14947 * 11 9 7 23 23 H 1.08986 * 108.04925 * 41.32145 * 12 11 9 24 24 H 1.09143 * 107.79204 * 157.84487 * 12 11 9 25 25 H 1.09581 * 110.26675 * 207.75379 * 14 13 12 26 26 H 1.09352 * 110.66894 * 328.47705 * 14 13 12 27 27 H 1.08748 * 111.53252 * 250.21862 * 15 14 13 28 28 H 1.09735 * 109.73905 * 129.49684 * 15 14 13 29 29 H 1.09057 * 110.93104 * 157.62173 * 18 13 12 30 30 H 1.08940 * 111.14091 * 34.24248 * 18 13 12 31 31 H 1.09789 * 109.23777 * 194.99270 * 19 16 15 32 32 H 1.09737 * 109.32349 * 312.09644 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2500 -2.5008 -0.0005 10 1 0.6369 -2.5538 0.9030 11 6 0.3430 -2.5495 -1.2128 12 6 -0.8494 -3.4580 -0.9740 13 7 -0.5976 -4.8650 -1.1417 14 6 0.0916 -5.0813 -2.4339 15 6 1.6001 -4.9522 -2.1500 16 6 1.7246 -4.9455 -0.6392 17 1 2.4040 -5.7716 -0.3685 18 6 0.3352 -5.3033 -0.0575 19 6 2.2663 -3.6837 -0.0011 20 1 -0.4851 0.8400 -0.0004 21 1 -0.0402 -1.5363 -1.3879 22 1 0.8897 -2.8597 -2.0877 23 1 -1.2086 -3.2841 0.0402 24 1 -1.6385 -3.1619 -1.6674 25 1 -0.1329 -6.0816 -2.8210 26 1 -0.2233 -4.3354 -3.1689 27 1 2.0124 -4.0459 -2.5874 28 1 2.1307 -5.8190 -2.5639 29 1 0.2563 -6.3774 0.1138 30 1 0.1502 -4.7549 0.8655 31 1 2.5551 -3.8982 1.0362 32 1 3.1727 -3.3681 -0.5331 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261265078.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:53 Heat of formation + Delta-G solvation = -1.520683 kcal Electronic energy + Delta-G solvation = -13231.903704 eV Core-core repulsion = 11191.799845 eV Total energy + Delta-G solvation = -2040.103859 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.78153 -34.11448 -32.36642 -30.99579 -28.84183 -26.33257 -24.55168 -23.02196 -20.57538 -19.55363 -18.06484 -16.42287 -15.54488 -14.83354 -14.35093 -13.99186 -13.29732 -12.67352 -12.57841 -12.08739 -11.63502 -11.30840 -11.00112 -10.93947 -10.80637 -10.57236 -10.45036 -10.20052 -9.99992 -9.74226 -9.22061 -8.95001 -8.81486 -8.27351 -7.70211 -5.95982 -4.05012 3.29471 3.36591 3.39593 4.43214 4.69763 5.18635 5.27804 5.36541 5.56597 5.77567 5.98245 6.01875 6.09023 6.23676 6.33086 6.34116 6.37256 6.56551 6.68337 6.76861 6.82706 6.90302 7.03649 7.26774 7.43860 7.55585 7.70941 7.86392 8.03279 8.26502 8.52295 8.99785 9.59347 11.06415 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.057221 B = 0.011884 C = 0.011069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.214427 B = 2355.613321 C = 2529.079301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.052 0.948 9 C 0.055 3.945 10 H 0.021 0.979 11 C -0.149 4.149 12 C 0.044 3.956 13 N -0.506 5.506 14 C 0.038 3.962 15 C -0.134 4.134 16 C -0.108 4.108 17 H 0.045 0.955 18 C 0.039 3.961 19 C -0.105 4.105 20 H 0.259 0.741 21 H 0.100 0.900 22 H 0.041 0.959 23 H 0.063 0.937 24 H 0.048 0.952 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.041 0.959 32 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.874 -7.680 -2.723 8.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.549 4.549 8 H 0.070 0.930 9 C 0.037 3.963 10 H 0.039 0.961 11 C -0.188 4.188 12 C -0.085 4.085 13 N -0.227 5.227 14 C -0.091 4.091 15 C -0.173 4.173 16 C -0.127 4.127 17 H 0.064 0.936 18 C -0.089 4.089 19 C -0.142 4.142 20 H 0.069 0.931 21 H 0.118 0.882 22 H 0.060 0.940 23 H 0.081 0.919 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.175 -7.847 -2.681 8.294 hybrid contribution 1.334 1.455 -0.024 1.975 sum 1.509 -6.392 -2.706 7.103 Atomic orbital electron populations 1.69870 1.05765 1.26263 1.50796 1.24960 0.94867 0.98954 0.95451 0.86647 0.79909 0.83732 0.78034 1.20787 1.21252 1.20025 1.21380 0.92807 0.90781 1.49899 0.92953 1.18972 0.92242 0.90884 0.94202 0.96129 1.21718 0.96018 1.02070 0.99036 1.21627 0.98751 0.86599 1.01492 1.65179 1.38830 1.17180 1.01519 1.23024 0.91961 1.00811 0.93258 1.22321 0.97415 1.01577 0.95952 1.21759 0.97799 0.98553 0.94630 0.93645 1.23569 0.90055 0.99490 0.95752 1.22063 0.99716 0.94313 0.98130 0.93060 0.88243 0.94034 0.91861 0.93382 0.91693 0.91386 0.90655 0.92876 0.91599 0.90291 0.94043 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.12 11.21 55.43 0.62 -24.50 16 2 C 0.06 1.60 5.12 -17.82 -0.09 1.51 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -14.00 8.48 -34.35 -0.29 -14.29 16 8 H 0.05 1.43 7.57 -52.49 -0.40 1.03 16 9 C 0.06 1.37 1.79 -90.87 -0.16 1.20 16 10 H 0.02 0.56 7.31 -51.75 -0.38 0.18 16 11 C -0.15 -3.50 4.30 -28.11 -0.12 -3.62 16 12 C 0.04 0.93 4.89 -6.03 -0.03 0.90 16 13 N -0.51 -9.41 5.83 -232.20 -1.35 -10.76 16 14 C 0.04 0.63 6.19 -2.66 -0.02 0.62 16 15 C -0.13 -2.23 5.65 -26.90 -0.15 -2.39 16 16 C -0.11 -1.92 2.58 -91.18 -0.24 -2.16 16 17 H 0.04 0.73 8.23 -51.17 -0.42 0.31 16 18 C 0.04 0.70 6.42 -1.37 -0.01 0.69 16 19 C -0.10 -2.19 4.91 -25.95 -0.13 -2.32 16 20 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 21 H 0.10 2.67 5.43 -51.51 -0.28 2.39 16 22 H 0.04 0.93 4.31 -52.64 -0.23 0.71 16 23 H 0.06 1.42 7.28 -51.94 -0.38 1.04 16 24 H 0.05 0.99 8.15 -51.85 -0.42 0.56 16 25 H 0.06 0.95 8.19 -51.60 -0.42 0.53 16 26 H 0.07 1.14 7.47 -51.73 -0.39 0.75 16 27 H 0.07 1.36 6.47 -52.07 -0.34 1.02 16 28 H 0.05 0.76 8.20 -51.51 -0.42 0.34 16 29 H 0.07 1.03 8.15 -51.90 -0.42 0.61 16 30 H 0.08 1.49 6.69 -51.96 -0.35 1.14 16 31 H 0.04 0.84 8.21 -51.48 -0.42 0.41 16 32 H 0.05 1.00 7.76 -51.51 -0.40 0.60 16 LS Contribution 235.95 15.07 3.56 3.56 Total: -1.00 -27.59 235.95 -8.23 -35.82 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -4.80 Total: -0.53 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: -1.24 Total: -19.85 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: -0.73 Total: -35.26 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -27.59 -8.23 -35.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261265078.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.301 kcal (2) G-P(sol) polarization free energy of solvation -27.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds