Wall clock time and date at job start Mon Mar 30 2020 01:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00006 * 2 1 4 4 H 1.48497 * 109.47141 * 270.00543 * 3 2 1 5 5 H 1.48502 * 109.47081 * 30.00206 * 3 2 1 6 6 H 1.48492 * 109.47083 * 149.99795 * 3 2 1 7 7 C 1.37874 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99951 * 180.02562 * 7 2 1 9 9 C 1.50886 * 120.00171 * 359.97438 * 7 2 1 10 10 H 1.09317 * 108.80892 * 299.20103 * 9 7 2 11 11 C 1.51481 * 109.10253 * 57.90355 * 9 7 2 12 12 C 1.51797 * 111.32644 * 205.86472 * 11 9 7 13 13 N 1.43911 * 115.42587 * 279.31099 * 12 11 9 14 14 C 1.48035 * 109.03255 * 310.59899 * 13 12 11 15 15 C 1.54041 * 106.42902 * 88.46126 * 14 13 12 16 16 C 1.51598 * 105.33117 * 11.29756 * 15 14 13 17 17 H 1.10332 * 106.96592 * 123.44390 * 16 15 14 18 18 C 1.49596 * 108.12130 * 67.10272 * 13 12 11 19 19 C 1.51421 * 116.93548 * 243.91091 * 16 15 14 20 20 H 0.97001 * 120.00449 * 0.02562 * 1 2 3 21 21 H 1.09735 * 107.88193 * 323.78054 * 11 9 7 22 22 H 1.07730 * 110.81529 * 82.14947 * 11 9 7 23 23 H 1.08986 * 108.04925 * 41.32145 * 12 11 9 24 24 H 1.09143 * 107.79204 * 157.84487 * 12 11 9 25 25 H 1.09581 * 110.26675 * 207.75379 * 14 13 12 26 26 H 1.09352 * 110.66894 * 328.47705 * 14 13 12 27 27 H 1.08748 * 111.53252 * 250.21862 * 15 14 13 28 28 H 1.09735 * 109.73905 * 129.49684 * 15 14 13 29 29 H 1.09057 * 110.93104 * 157.62173 * 18 13 12 30 30 H 1.08940 * 111.14091 * 34.24248 * 18 13 12 31 31 H 1.09789 * 109.23777 * 194.99270 * 19 16 15 32 32 H 1.09737 * 109.32349 * 312.09644 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2500 -2.5008 -0.0005 10 1 0.6369 -2.5538 0.9030 11 6 0.3430 -2.5495 -1.2128 12 6 -0.8494 -3.4580 -0.9740 13 7 -0.5976 -4.8650 -1.1417 14 6 0.0916 -5.0813 -2.4339 15 6 1.6001 -4.9522 -2.1500 16 6 1.7246 -4.9455 -0.6392 17 1 2.4040 -5.7716 -0.3685 18 6 0.3352 -5.3033 -0.0575 19 6 2.2663 -3.6837 -0.0011 20 1 -0.4851 0.8400 -0.0004 21 1 -0.0402 -1.5363 -1.3879 22 1 0.8897 -2.8597 -2.0877 23 1 -1.2086 -3.2841 0.0402 24 1 -1.6385 -3.1619 -1.6674 25 1 -0.1329 -6.0816 -2.8210 26 1 -0.2233 -4.3354 -3.1689 27 1 2.0124 -4.0459 -2.5874 28 1 2.1307 -5.8190 -2.5639 29 1 0.2563 -6.3774 0.1138 30 1 0.1502 -4.7549 0.8655 31 1 2.5551 -3.8982 1.0362 32 1 3.1727 -3.3681 -0.5331 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261265078.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:53 Heat of formation + Delta-G solvation = -19.238550 kcal Electronic energy + Delta-G solvation = -13232.672008 eV Core-core repulsion = 11191.799845 eV Total energy + Delta-G solvation = -2040.872163 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.31996 -36.04205 -33.96341 -32.91506 -30.27267 -28.21066 -26.24223 -24.81261 -22.11467 -21.15897 -19.72720 -18.48389 -17.12548 -16.59266 -16.03180 -15.57795 -14.95470 -14.47197 -14.29066 -13.62494 -13.26448 -13.10880 -12.77340 -12.71919 -12.54125 -12.28761 -12.11041 -11.76057 -11.65694 -11.43529 -11.04146 -10.74169 -10.72474 -10.27468 -9.29628 -8.06536 -6.23921 1.38390 1.39462 1.49192 2.41384 3.16302 3.27512 3.81770 3.88663 4.12056 4.36942 4.48427 4.52658 4.60293 4.67542 4.73470 4.87173 4.88314 5.05691 5.09409 5.16775 5.24615 5.28216 5.42325 5.51124 5.61073 5.64410 5.91615 6.08879 6.12251 6.38803 6.47456 6.89827 7.43917 8.93800 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.057221 B = 0.011884 C = 0.011069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.214427 B = 2355.613321 C = 2529.079301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.011 3.989 3 Si 0.951 3.049 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.047 0.953 9 C 0.054 3.946 10 H -0.015 1.015 11 C -0.136 4.136 12 C 0.060 3.940 13 N -0.506 5.506 14 C 0.036 3.964 15 C -0.132 4.132 16 C -0.110 4.110 17 H 0.075 0.925 18 C 0.039 3.961 19 C -0.097 4.097 20 H 0.260 0.740 21 H 0.062 0.938 22 H 0.050 0.950 23 H 0.039 0.961 24 H 0.049 0.951 25 H 0.096 0.904 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.660 -9.073 -3.526 9.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.187 4.187 3 Si 0.777 3.223 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.573 4.573 8 H 0.066 0.934 9 C 0.035 3.965 10 H 0.003 0.997 11 C -0.175 4.175 12 C -0.070 4.070 13 N -0.227 5.227 14 C -0.092 4.092 15 C -0.171 4.171 16 C -0.130 4.130 17 H 0.093 0.907 18 C -0.088 4.088 19 C -0.135 4.135 20 H 0.069 0.931 21 H 0.080 0.920 22 H 0.069 0.931 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.114 0.886 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.106 0.894 29 H 0.116 0.884 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.967 -9.253 -3.487 9.936 hybrid contribution 1.091 1.873 0.247 2.181 sum 2.058 -7.380 -3.241 8.319 Atomic orbital electron populations 1.70017 1.07015 1.26946 1.51117 1.25707 0.95687 1.02205 0.95101 0.85667 0.78738 0.79709 0.78217 1.20118 1.20911 1.19517 1.21745 0.92838 0.92425 1.50244 0.93437 1.18930 0.92678 0.91802 0.93058 0.99711 1.21531 0.96612 1.00628 0.98756 1.21359 0.97491 0.88151 1.00010 1.65218 1.39888 1.14628 1.02996 1.23146 0.91705 1.02460 0.91928 1.22307 0.97678 1.02274 0.94835 1.21740 0.98368 0.97406 0.95450 0.90681 1.23627 0.89630 1.01005 0.94585 1.21943 0.98293 0.94530 0.98689 0.93102 0.91963 0.93150 0.94232 0.93278 0.88562 0.91861 0.92486 0.89425 0.88392 0.92371 0.93921 0.94170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.01 11.21 21.45 0.24 -52.77 16 2 C 0.01 0.64 5.12 84.65 0.43 1.07 16 3 Si 0.95 44.10 29.54 68.60 2.03 46.13 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.53 -29.94 8.48 25.66 0.22 -29.73 16 8 H 0.05 2.63 7.57 -2.91 -0.02 2.61 16 9 C 0.05 2.72 1.79 -10.96 -0.02 2.70 16 10 H -0.02 -0.87 7.31 -2.22 -0.02 -0.88 16 11 C -0.14 -6.49 4.30 29.70 0.13 -6.36 16 12 C 0.06 2.52 4.89 86.46 0.42 2.95 16 13 N -0.51 -17.89 5.83 -888.55 -5.18 -23.07 16 14 C 0.04 1.08 6.19 86.44 0.53 1.61 16 15 C -0.13 -3.98 5.65 30.49 0.17 -3.81 16 16 C -0.11 -3.64 2.58 -11.15 -0.03 -3.66 16 17 H 0.07 2.10 8.23 -1.67 -0.01 2.09 16 18 C 0.04 1.30 6.42 86.39 0.55 1.86 16 19 C -0.10 -4.01 4.91 31.10 0.15 -3.85 16 20 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 21 H 0.06 3.46 5.43 -2.00 -0.01 3.45 16 22 H 0.05 2.27 4.31 -3.05 -0.01 2.26 16 23 H 0.04 1.83 7.28 -2.39 -0.02 1.82 16 24 H 0.05 2.03 8.15 -2.31 -0.02 2.01 16 25 H 0.10 2.36 8.19 -2.08 -0.02 2.35 16 26 H 0.06 1.97 7.47 -2.20 -0.02 1.95 16 27 H 0.06 1.93 6.47 -2.52 -0.02 1.92 16 28 H 0.09 2.08 8.20 -1.99 -0.02 2.06 16 29 H 0.10 2.67 8.15 -2.36 -0.02 2.65 16 30 H 0.06 2.17 6.69 -2.42 -0.02 2.16 16 31 H 0.04 1.71 8.21 -1.97 -0.02 1.69 16 32 H 0.04 1.69 7.76 -1.99 -0.02 1.67 16 Total: -1.00 -59.73 235.95 0.76 -58.98 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 1.10 Total: 7.97 kcal Atomic # 6 Polarization: -39.80 SS G_CDS: 2.57 Total: -37.23 kcal Atomic # 7 Polarization: -70.90 SS G_CDS: -4.94 Total: -75.84 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -59.73 0.76 -58.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261265078.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.738 kcal (2) G-P(sol) polarization free energy of solvation -59.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds