Wall clock time and date at job start Mon Mar 30 2020 02:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.49043 * 2 1 4 4 C 1.53132 * 109.49162 * 239.95581 * 2 1 3 5 5 H 1.08999 * 109.57690 * 359.83224 * 4 2 1 6 6 C 1.50699 * 109.57947 * 120.09398 * 4 2 1 7 7 H 1.08003 * 120.00313 * 120.00653 * 6 4 2 8 8 C 1.37878 * 120.00312 * 300.00082 * 6 4 2 9 9 N 1.31519 * 119.99418 * 0.02562 * 8 6 4 10 10 Si 1.86800 * 120.00355 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47078 * 59.99963 * 10 8 6 12 12 H 1.48494 * 109.47027 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46758 * 299.99987 * 10 8 6 14 14 C 1.53383 * 108.82980 * 240.03186 * 4 2 1 15 15 C 1.53394 * 108.59461 * 301.03508 * 14 4 2 16 16 C 1.53172 * 108.85059 * 58.99254 * 15 14 4 17 17 N 1.46908 * 109.48751 * 120.03807 * 2 1 3 18 18 C 1.46977 * 111.03473 * 57.99392 * 17 2 1 19 19 C 1.53129 * 109.36350 * 61.94762 * 18 17 2 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00339 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00321 * 1 2 3 23 23 H 0.97000 * 119.99744 * 179.97438 * 9 8 6 24 24 H 1.08999 * 110.11509 * 179.60342 * 14 4 2 25 25 H 1.09002 * 109.57475 * 178.80679 * 15 14 4 26 26 H 1.08993 * 109.57510 * 299.19090 * 15 14 4 27 27 H 1.09000 * 109.48187 * 239.99000 * 16 15 14 28 28 H 1.08994 * 109.50110 * 119.90810 * 16 15 14 29 29 H 1.08995 * 109.48523 * 301.98081 * 18 17 2 30 30 H 1.09001 * 109.50863 * 181.92166 * 18 17 2 31 31 H 1.09005 * 109.56968 * 240.24901 * 19 18 17 32 32 H 1.08997 * 109.68742 * 119.93419 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0409 -0.7227 -1.2496 5 1 1.1947 -1.0693 -1.8428 6 6 2.8806 0.2212 -2.0711 7 1 3.9150 -0.0135 -2.2742 8 6 2.3282 1.3846 -2.5637 9 7 1.0686 1.6706 -2.3160 10 14 3.3688 2.5544 -3.5826 11 1 3.8624 1.8509 -4.7936 12 1 2.5467 3.7224 -3.9886 13 1 4.5247 3.0200 -2.7749 14 6 2.8897 -1.9239 -0.8145 15 6 4.0550 -1.4144 0.0432 16 6 3.4882 -0.6727 1.2576 17 7 2.0201 -0.6933 1.1989 18 6 1.5106 -2.0707 1.2571 19 6 2.0205 -2.8523 0.0430 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 0.6801 2.4892 -2.6622 24 1 3.2591 -2.4586 -1.6895 25 1 4.6575 -2.2584 0.3792 26 1 4.6712 -0.7345 -0.5449 27 1 3.8381 0.3596 1.2490 28 1 3.8225 -1.1629 2.1720 29 1 0.4208 -2.0559 1.2486 30 1 1.8608 -2.5500 2.1713 31 1 1.1737 -3.2062 -0.5452 32 1 2.6142 -3.7032 0.3770 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261329562.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:59 Heat of formation + Delta-G solvation = -4.381695 kcal Electronic energy + Delta-G solvation = -13454.072100 eV Core-core repulsion = 11413.844178 eV Total energy + Delta-G solvation = -2040.227922 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.80668 -33.21753 -31.80158 -30.48351 -30.00808 -26.46639 -24.18836 -22.12747 -21.24283 -20.34894 -16.66437 -16.19136 -15.66058 -14.90441 -14.33898 -14.15209 -12.38872 -12.34754 -12.29194 -12.02438 -11.66433 -11.41335 -11.09437 -10.82215 -10.68749 -10.60464 -10.47226 -10.26201 -10.00778 -9.64080 -9.51305 -8.85315 -8.57298 -8.41378 -7.14801 -5.97501 -4.01413 3.32155 3.37299 3.39703 4.44638 5.00899 5.32960 5.46526 5.63618 5.81926 5.97783 6.02168 6.17197 6.32814 6.36816 6.44481 6.49248 6.61618 6.70551 6.78938 6.83701 6.93574 7.06664 7.10659 7.45225 7.48430 7.70849 7.77990 7.97991 8.13697 8.27787 8.53095 9.02191 9.61436 11.08867 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.046144 B = 0.014913 C = 0.013239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.656980 B = 1877.153816 C = 2114.520713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.104 3.896 3 H 0.085 0.915 4 C 0.030 3.970 5 H 0.027 0.973 6 C -0.510 4.510 7 H 0.053 0.947 8 C 0.063 3.937 9 N -0.886 5.886 10 Si 0.888 3.112 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.278 1.278 14 C -0.084 4.084 15 C -0.136 4.136 16 C 0.064 3.936 17 N -0.540 5.540 18 C 0.054 3.946 19 C -0.148 4.148 20 H 0.027 0.973 21 H 0.087 0.913 22 H 0.029 0.971 23 H 0.260 0.740 24 H 0.058 0.942 25 H 0.038 0.962 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.524 -4.778 4.756 6.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.004 4.004 3 H 0.103 0.897 4 C 0.010 3.990 5 H 0.045 0.955 6 C -0.549 4.549 7 H 0.072 0.928 8 C -0.139 4.139 9 N -0.524 5.524 10 Si 0.716 3.284 11 H -0.205 1.205 12 H -0.214 1.214 13 H -0.204 1.204 14 C -0.103 4.103 15 C -0.175 4.175 16 C -0.064 4.064 17 N -0.262 5.262 18 C -0.075 4.075 19 C -0.187 4.187 20 H 0.046 0.954 21 H 0.106 0.894 22 H 0.048 0.952 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.182 -4.350 5.156 6.849 hybrid contribution 0.885 0.187 -1.377 1.647 sum 2.066 -4.162 3.780 5.990 Atomic orbital electron populations 1.21903 0.96174 0.99071 1.01765 1.21785 0.93804 0.98149 0.86639 0.89712 1.19374 0.94724 0.91212 0.93702 0.95484 1.21129 0.97067 1.04683 1.31996 0.92839 1.24940 0.94920 0.97856 0.96162 1.69888 1.11917 1.25162 1.45455 0.86727 0.80353 0.80549 0.80750 1.20505 1.21366 1.20409 1.21215 0.95703 0.97276 0.96141 1.22107 0.98166 0.99222 0.98032 1.21963 0.88404 1.00122 0.95959 1.62729 1.08018 1.13985 1.41447 1.22098 0.99892 0.89400 0.96111 1.22270 0.99670 0.98263 0.98509 0.95415 0.89407 0.95228 0.93029 0.92361 0.94327 0.91120 0.91391 0.92797 0.91205 0.92580 0.92731 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.48 37.16 0.32 -2.63 16 2 C 0.10 2.44 1.90 -67.64 -0.13 2.31 16 3 H 0.08 2.28 6.95 -51.93 -0.36 1.92 16 4 C 0.03 0.73 1.83 -91.51 -0.17 0.56 16 5 H 0.03 0.74 7.60 -51.93 -0.39 0.34 16 6 C -0.51 -13.70 7.64 -34.44 -0.26 -13.96 16 7 H 0.05 1.43 6.79 -52.48 -0.36 1.08 16 8 C 0.06 1.70 5.02 -17.82 -0.09 1.61 16 9 N -0.89 -24.47 10.55 55.43 0.58 -23.88 16 10 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 C -0.08 -1.79 2.94 -90.02 -0.26 -2.05 16 15 C -0.14 -2.68 5.50 -26.44 -0.15 -2.83 16 16 C 0.06 1.25 6.10 -3.71 -0.02 1.22 16 17 N -0.54 -11.22 5.03 -226.27 -1.14 -12.35 16 18 C 0.05 0.99 5.71 -3.72 -0.02 0.97 16 19 C -0.15 -2.73 5.75 -26.46 -0.15 -2.88 16 20 H 0.03 0.57 6.33 -51.93 -0.33 0.24 16 21 H 0.09 2.16 6.50 -51.93 -0.34 1.82 16 22 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 24 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 1.49 6.68 -51.93 -0.35 1.14 16 27 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.26 6.16 -51.93 -0.32 0.94 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 237.76 15.07 3.58 3.58 Total: -1.00 -26.99 237.76 -7.89 -34.88 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -4.96 Total: -0.64 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -0.94 Total: -17.68 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: -0.55 Total: -36.24 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -26.99 -7.89 -34.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261329562.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.503 kcal (2) G-P(sol) polarization free energy of solvation -26.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds