Wall clock time and date at job start Mon Mar 30 2020 02:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.49043 * 2 1 4 4 C 1.53132 * 109.49162 * 239.95581 * 2 1 3 5 5 H 1.08999 * 109.57690 * 359.83224 * 4 2 1 6 6 C 1.50699 * 109.57947 * 120.09398 * 4 2 1 7 7 H 1.08003 * 120.00313 * 120.00653 * 6 4 2 8 8 C 1.37878 * 120.00312 * 300.00082 * 6 4 2 9 9 N 1.31519 * 119.99418 * 0.02562 * 8 6 4 10 10 Si 1.86800 * 120.00355 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47078 * 59.99963 * 10 8 6 12 12 H 1.48494 * 109.47027 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46758 * 299.99987 * 10 8 6 14 14 C 1.53383 * 108.82980 * 240.03186 * 4 2 1 15 15 C 1.53394 * 108.59461 * 301.03508 * 14 4 2 16 16 C 1.53172 * 108.85059 * 58.99254 * 15 14 4 17 17 N 1.46908 * 109.48751 * 120.03807 * 2 1 3 18 18 C 1.46977 * 111.03473 * 57.99392 * 17 2 1 19 19 C 1.53129 * 109.36350 * 61.94762 * 18 17 2 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00339 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00321 * 1 2 3 23 23 H 0.97000 * 119.99744 * 179.97438 * 9 8 6 24 24 H 1.08999 * 110.11509 * 179.60342 * 14 4 2 25 25 H 1.09002 * 109.57475 * 178.80679 * 15 14 4 26 26 H 1.08993 * 109.57510 * 299.19090 * 15 14 4 27 27 H 1.09000 * 109.48187 * 239.99000 * 16 15 14 28 28 H 1.08994 * 109.50110 * 119.90810 * 16 15 14 29 29 H 1.08995 * 109.48523 * 301.98081 * 18 17 2 30 30 H 1.09001 * 109.50863 * 181.92166 * 18 17 2 31 31 H 1.09005 * 109.56968 * 240.24901 * 19 18 17 32 32 H 1.08997 * 109.68742 * 119.93419 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0409 -0.7227 -1.2496 5 1 1.1947 -1.0693 -1.8428 6 6 2.8806 0.2212 -2.0711 7 1 3.9150 -0.0135 -2.2742 8 6 2.3282 1.3846 -2.5637 9 7 1.0686 1.6706 -2.3160 10 14 3.3688 2.5544 -3.5826 11 1 3.8624 1.8509 -4.7936 12 1 2.5467 3.7224 -3.9886 13 1 4.5247 3.0200 -2.7749 14 6 2.8897 -1.9239 -0.8145 15 6 4.0550 -1.4144 0.0432 16 6 3.4882 -0.6727 1.2576 17 7 2.0201 -0.6933 1.1989 18 6 1.5106 -2.0707 1.2571 19 6 2.0205 -2.8523 0.0430 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 0.6801 2.4892 -2.6622 24 1 3.2591 -2.4586 -1.6895 25 1 4.6575 -2.2584 0.3792 26 1 4.6712 -0.7345 -0.5449 27 1 3.8381 0.3596 1.2490 28 1 3.8225 -1.1629 2.1720 29 1 0.4208 -2.0559 1.2486 30 1 1.8608 -2.5500 2.1713 31 1 1.1737 -3.2062 -0.5452 32 1 2.6142 -3.7032 0.3770 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261329562.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:59 Heat of formation + Delta-G solvation = -20.992349 kcal Electronic energy + Delta-G solvation = -13454.792392 eV Core-core repulsion = 11413.844178 eV Total energy + Delta-G solvation = -2040.948214 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.47644 -35.19650 -33.50609 -32.22446 -31.65584 -28.34400 -26.04879 -23.65750 -23.02599 -22.09956 -18.65299 -17.88292 -17.32792 -16.62353 -16.18796 -15.89106 -14.26689 -14.01405 -13.94841 -13.72685 -13.46324 -12.99418 -12.85786 -12.65215 -12.49620 -12.38152 -12.16926 -12.06031 -11.84045 -11.38697 -11.17099 -10.66639 -10.49462 -10.38594 -8.82581 -8.05119 -6.15058 1.40822 1.41360 1.48432 2.44269 3.22330 3.39151 3.98933 4.04175 4.24046 4.51089 4.54249 4.56372 4.64303 4.78091 4.82257 4.93443 4.98449 5.06739 5.12167 5.20625 5.25956 5.33327 5.47714 5.54783 5.68685 5.85001 5.90321 5.93915 6.32147 6.48123 6.64582 6.97940 7.49868 8.99392 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.046144 B = 0.014913 C = 0.013239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.656980 B = 1877.153816 C = 2114.520713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.115 3.885 3 H 0.043 0.957 4 C 0.028 3.972 5 H -0.009 1.009 6 C -0.527 4.527 7 H 0.047 0.953 8 C 0.017 3.983 9 N -0.905 5.905 10 Si 0.945 3.055 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.275 1.275 14 C -0.089 4.089 15 C -0.131 4.131 16 C 0.063 3.937 17 N -0.545 5.545 18 C 0.052 3.948 19 C -0.141 4.141 20 H 0.042 0.958 21 H 0.060 0.940 22 H 0.039 0.961 23 H 0.259 0.741 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.271 -5.916 5.963 8.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.007 3.993 3 H 0.062 0.938 4 C 0.008 3.992 5 H 0.010 0.990 6 C -0.565 4.565 7 H 0.065 0.935 8 C -0.182 4.182 9 N -0.544 5.544 10 Si 0.772 3.228 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.200 1.200 14 C -0.108 4.108 15 C -0.170 4.170 16 C -0.066 4.066 17 N -0.266 5.266 18 C -0.076 4.076 19 C -0.180 4.180 20 H 0.061 0.939 21 H 0.079 0.921 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.935 -5.498 6.369 8.634 hybrid contribution 0.654 0.522 -1.759 1.948 sum 2.589 -4.976 4.610 7.261 Atomic orbital electron populations 1.21746 0.95606 0.99742 1.00869 1.21390 0.94197 0.96197 0.87532 0.93823 1.19317 0.93822 0.92459 0.93586 0.99039 1.21419 0.97081 1.05460 1.32543 0.93480 1.25624 0.95995 0.99323 0.97262 1.70019 1.12985 1.25357 1.46038 0.85817 0.78975 0.78696 0.79342 1.20187 1.21068 1.20011 1.21194 0.96348 0.96406 0.96857 1.22049 0.97509 0.99858 0.97561 1.22052 0.87481 0.99733 0.97300 1.62671 1.09001 1.15628 1.39345 1.22237 1.00098 0.87860 0.97389 1.22216 0.99433 0.98452 0.97931 0.93880 0.92142 0.94201 0.93222 0.93249 0.91112 0.93391 0.92976 0.89241 0.91096 0.89336 0.93041 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.48 71.98 0.61 -4.88 16 2 C 0.12 5.46 1.90 44.96 0.09 5.55 16 3 H 0.04 2.42 6.95 -2.39 -0.02 2.40 16 4 C 0.03 1.40 1.83 -11.37 -0.02 1.38 16 5 H -0.01 -0.48 7.60 -2.39 -0.02 -0.50 16 6 C -0.53 -28.91 7.64 25.60 0.20 -28.72 16 7 H 0.05 2.58 6.79 -2.91 -0.02 2.56 16 8 C 0.02 0.96 5.02 84.65 0.42 1.38 16 9 N -0.91 -51.37 10.55 21.45 0.23 -51.14 16 10 Si 0.95 43.95 29.54 68.60 2.03 45.98 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 13 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 14 C -0.09 -3.66 2.94 -10.40 -0.03 -3.69 16 15 C -0.13 -4.88 5.50 30.78 0.17 -4.71 16 16 C 0.06 2.28 6.10 86.35 0.53 2.81 16 17 N -0.55 -21.57 5.03 -869.77 -4.37 -25.94 16 18 C 0.05 1.74 5.71 86.33 0.49 2.23 16 19 C -0.14 -4.79 5.75 30.77 0.18 -4.61 16 20 H 0.04 1.76 6.33 -2.39 -0.02 1.74 16 21 H 0.06 3.05 6.50 -2.39 -0.02 3.03 16 22 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 23 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 24 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.05 1.98 6.68 -2.39 -0.02 1.97 16 27 H 0.05 2.03 8.14 -2.39 -0.02 2.02 16 28 H 0.09 2.64 8.14 -2.39 -0.02 2.63 16 29 H 0.07 2.34 6.16 -2.39 -0.01 2.33 16 30 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -58.31 237.76 1.59 -56.72 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 1.08 Total: 7.64 kcal Atomic # 6 Polarization: -35.89 SS G_CDS: 2.63 Total: -33.26 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -4.15 Total: -77.09 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -58.31 1.59 -56.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261329562.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.731 kcal (2) G-P(sol) polarization free energy of solvation -58.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds