Wall clock time and date at job start Mon Mar 30 2020 02:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 C 1.50693 * 109.46915 * 240.00078 * 2 1 3 5 5 H 1.08005 * 119.99854 * 239.99900 * 4 2 1 6 6 C 1.37878 * 120.00083 * 59.99957 * 4 2 1 7 7 N 1.31511 * 119.99935 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99899 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47458 * 89.99770 * 8 6 4 10 10 H 1.48501 * 109.47154 * 210.00388 * 8 6 4 11 11 H 1.48500 * 109.47109 * 329.99685 * 8 6 4 12 12 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 13 13 C 1.46905 * 110.99870 * 274.99736 * 12 2 1 14 14 H 1.09004 * 110.43546 * 36.08954 * 13 12 2 15 15 C 1.54891 * 110.48745 * 273.54783 * 13 12 2 16 16 C 1.54891 * 102.74966 * 203.37878 * 15 13 12 17 17 C 1.54266 * 104.19238 * 37.94352 * 16 15 13 18 18 H 1.09000 * 117.41246 * 196.41333 * 17 16 15 19 19 C 1.52999 * 118.20115 * 40.56871 * 17 16 15 20 20 C 1.52998 * 60.37885 * 266.38241 * 19 17 16 21 21 H 1.09001 * 119.75846 * 248.87842 * 20 19 17 22 22 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 23 23 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 24 24 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 25 25 H 0.97003 * 119.99872 * 179.97438 * 7 6 4 26 26 H 1.00901 * 111.00067 * 38.94911 * 12 2 1 27 27 H 1.09004 * 110.75529 * 321.69842 * 15 13 12 28 28 H 1.08998 * 110.75745 * 84.87762 * 15 13 12 29 29 H 1.08994 * 110.48720 * 156.61771 * 16 15 13 30 30 H 1.08993 * 110.48261 * 279.13298 * 16 15 13 31 31 H 1.08990 * 117.46368 * 13.98128 * 19 17 16 32 32 H 1.09003 * 117.45899 * 158.78972 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3212 -1.1203 -4.0079 9 1 1.3426 -2.1617 -4.4118 10 1 2.4865 -0.1414 -5.1123 11 1 3.6292 -1.7583 -3.7122 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 1 1.2525 0.9285 2.3166 15 6 3.4353 0.9768 2.3654 16 6 3.5832 1.3768 3.8544 17 6 3.0272 0.1641 4.6290 18 1 2.7727 0.3127 5.6784 19 6 3.3732 -1.2376 4.1227 20 6 2.0730 -0.5698 3.6705 21 1 1.1156 -0.9617 4.0138 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 0.7095 1.1619 -3.4844 26 1 1.4495 -1.4979 1.4100 27 1 4.2486 0.3187 2.0595 28 1 3.3941 1.8597 1.7275 29 1 4.6318 1.5401 4.1032 30 1 2.9975 2.2705 4.0693 31 1 4.1753 -1.3236 3.3899 32 1 3.2946 -2.0617 4.8318 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306171883.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:31 Heat of formation + Delta-G solvation = 0.664128 kcal Electronic energy + Delta-G solvation = -12520.551976 eV Core-core repulsion = 10480.542858 eV Total energy + Delta-G solvation = -2040.009118 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.63924 -37.14959 -34.23849 -31.80640 -30.30664 -27.28290 -26.55860 -24.34940 -22.20630 -20.59982 -20.04980 -18.36092 -17.27678 -16.70403 -16.18771 -15.34318 -14.87116 -14.48541 -14.16373 -13.68443 -13.31983 -13.01109 -12.87945 -12.74248 -12.31634 -12.20459 -12.06543 -11.97801 -11.81161 -11.48326 -11.05900 -10.90262 -10.50115 -10.48538 -8.90316 -8.09473 -6.20708 1.42338 1.42807 1.54227 2.43773 2.83756 3.18466 3.54820 3.73982 3.86802 4.11252 4.32408 4.36811 4.54923 4.67915 4.72317 4.81337 4.85015 4.89394 4.97142 5.08273 5.11851 5.24411 5.32710 5.35631 5.46938 5.52157 5.69042 5.84459 6.29140 6.69402 6.87711 6.97273 7.49535 8.96162 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.058737 B = 0.008695 C = 0.008513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.586541 B = 3219.358997 C = 3288.297861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.217 3.783 3 H -0.001 1.001 4 C -0.513 4.513 5 H 0.054 0.946 6 C 0.006 3.994 7 N -0.924 5.924 8 Si 0.961 3.039 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.677 5.677 13 C 0.105 3.895 14 H 0.026 0.974 15 C -0.117 4.117 16 C -0.090 4.090 17 C -0.152 4.152 18 H 0.131 0.869 19 C -0.137 4.137 20 C -0.181 4.181 21 H 0.112 0.888 22 H 0.021 0.979 23 H 0.061 0.939 24 H 0.032 0.968 25 H 0.261 0.739 26 H 0.330 0.670 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.949 -1.418 12.397 12.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.108 3.892 3 H 0.016 0.984 4 C -0.552 4.552 5 H 0.072 0.928 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.787 3.213 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.306 5.306 13 C -0.005 4.005 14 H 0.044 0.956 15 C -0.156 4.156 16 C -0.127 4.127 17 C -0.171 4.171 18 H 0.149 0.851 19 C -0.174 4.174 20 C -0.200 4.200 21 H 0.130 0.870 22 H 0.040 0.960 23 H 0.080 0.920 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.147 0.853 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.535 -1.209 12.084 12.649 hybrid contribution -1.011 -0.028 -1.036 1.448 sum 2.524 -1.237 11.048 11.400 Atomic orbital electron populations 1.22245 1.00279 0.99155 0.99833 1.18935 0.89773 0.92605 0.87906 0.98355 1.21458 1.30274 1.12346 0.91099 0.92807 1.25749 0.95529 0.95904 1.01966 1.70018 1.38214 1.24302 1.23937 0.85505 0.78795 0.78212 0.78779 1.20029 1.20944 1.19528 1.60722 1.57449 1.09263 1.03169 1.21954 0.96148 0.93284 0.89096 0.95562 1.22467 0.97328 0.98811 0.96978 1.21898 1.01725 0.96773 0.92319 1.23206 1.03219 0.92078 0.98569 0.85078 1.22854 0.97114 0.95140 1.02267 1.23131 0.95956 1.05557 0.95324 0.87039 0.96005 0.92009 0.94908 0.93042 0.85256 0.91860 0.93801 0.90137 0.90511 0.89985 0.86522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.78 8.92 71.98 0.64 -7.14 16 2 C 0.22 11.36 2.44 44.17 0.11 11.47 16 3 H 0.00 -0.09 7.74 -2.39 -0.02 -0.11 16 4 C -0.51 -29.35 8.84 25.60 0.23 -29.12 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.36 5.30 84.66 0.45 0.81 16 7 N -0.92 -54.56 11.32 21.45 0.24 -54.32 16 8 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 9 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 N -0.68 -29.69 6.09 -467.80 -2.85 -32.53 16 13 C 0.11 3.90 2.89 45.99 0.13 4.03 16 14 H 0.03 1.06 7.20 -2.38 -0.02 1.04 16 15 C -0.12 -4.10 5.92 31.89 0.19 -3.91 16 16 C -0.09 -2.30 6.77 31.67 0.21 -2.08 16 17 C -0.15 -3.59 7.06 -10.07 -0.07 -3.66 16 18 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 19 C -0.14 -3.42 9.83 30.59 0.30 -3.12 16 20 C -0.18 -5.21 6.45 -10.07 -0.06 -5.28 16 21 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 22 H 0.02 0.96 7.45 -2.38 -0.02 0.94 16 23 H 0.06 3.43 6.07 -2.39 -0.01 3.41 16 24 H 0.03 1.55 8.13 -2.39 -0.02 1.53 16 25 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 26 H 0.33 13.79 8.21 -89.69 -0.74 13.05 16 27 H 0.06 2.34 7.38 -2.38 -0.02 2.32 16 28 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.08 2.34 7.21 -2.39 -0.02 2.32 16 32 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -61.16 257.06 1.90 -59.26 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.35 Total: 18.67 kcal Atomic # 6 Polarization: -40.13 SS G_CDS: 2.13 Total: -38.00 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -2.60 Total: -86.85 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -61.16 1.90 -59.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306171883.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.927 kcal (2) G-P(sol) polarization free energy of solvation -61.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds