Wall clock time and date at job start Mon Mar 30 2020 02:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46589 * 89.99875 * 8 6 4 10 10 H 1.48490 * 109.47303 * 209.99928 * 8 6 4 11 11 H 1.48497 * 109.46869 * 330.00523 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46897 * 111.00172 * 84.99810 * 12 2 1 14 14 H 1.08997 * 115.52557 * 9.50038 * 13 12 2 15 15 C 1.52996 * 117.46350 * 155.00478 * 13 12 2 16 16 H 1.09003 * 119.29288 * 355.35497 * 15 13 12 17 17 C 1.54267 * 118.20062 * 201.21433 * 15 13 12 18 18 C 1.54886 * 104.19228 * 272.20664 * 17 15 13 19 19 C 1.54890 * 102.75142 * 37.94384 * 18 17 15 20 20 C 1.53000 * 117.45839 * 224.04567 * 13 12 2 21 21 H 1.09004 * 119.30119 * 3.70728 * 20 13 12 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.97001 * 119.99599 * 179.97438 * 7 6 4 26 26 H 1.00896 * 110.99793 * 208.95333 * 12 2 1 27 27 H 1.08990 * 110.48442 * 30.88502 * 17 15 13 28 28 H 1.09005 * 110.48280 * 153.39845 * 17 15 13 29 29 H 1.09002 * 110.75242 * 156.25765 * 18 17 15 30 30 H 1.09005 * 110.75983 * 279.44187 * 18 17 15 31 31 H 1.09002 * 110.48270 * 80.72972 * 19 18 17 32 32 H 1.08998 * 110.48323 * 203.24220 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 1 1.9245 1.2763 -2.1166 15 6 3.0706 -0.1146 -3.4653 16 1 3.7418 -0.9650 -3.3453 17 6 3.5249 1.0221 -4.4040 18 6 2.4581 1.0367 -5.5268 19 6 1.1468 0.7435 -4.7562 20 6 1.5586 -0.2918 -3.6892 21 1 1.1054 -1.2818 -3.7409 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.9033 -0.5281 4.4375 26 1 2.9173 -1.1204 -1.0288 27 1 3.5337 1.9742 -3.8736 28 1 4.5112 0.8062 -4.8149 29 1 2.4144 2.0151 -6.0053 30 1 2.6600 0.2575 -6.2618 31 1 0.7716 1.6507 -4.2827 32 1 0.3959 0.3254 -5.4266 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306251850.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:54 Heat of formation + Delta-G solvation = 20.879646 kcal Electronic energy + Delta-G solvation = -12354.614637 eV Core-core repulsion = 10315.482130 eV Total energy + Delta-G solvation = -2039.132508 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.25977 -35.48305 -32.47202 -30.85738 -28.08403 -27.86766 -25.03197 -21.67051 -20.15490 -19.90603 -19.35763 -16.83294 -15.64180 -15.33258 -14.61811 -13.67358 -13.52652 -13.10716 -12.98021 -12.51178 -12.08693 -11.62759 -11.24548 -11.05384 -11.02090 -10.89524 -10.78672 -10.57918 -10.21705 -9.77970 -9.57838 -9.26476 -8.96580 -8.60964 -7.44486 -6.11106 -4.11208 3.26830 3.35881 3.38533 3.99888 4.37677 4.48405 4.95892 5.00096 5.21117 5.27538 5.46234 5.59766 5.67905 5.76598 5.78129 5.88527 5.95429 6.11138 6.17630 6.25321 6.40852 6.48729 6.56623 6.64176 6.75305 6.84801 7.39009 7.55968 7.95286 8.31392 8.59653 8.92956 9.50903 11.01859 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.062372 B = 0.008561 C = 0.008200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.813611 B = 3270.018132 C = 3413.653822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.185 3.815 3 H 0.003 0.997 4 C -0.522 4.522 5 H 0.079 0.921 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.892 3.108 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.649 5.649 13 C 0.062 3.938 14 H 0.087 0.913 15 C -0.187 4.187 16 H 0.107 0.893 17 C -0.094 4.094 18 C -0.122 4.122 19 C -0.095 4.095 20 C -0.159 4.159 21 H 0.108 0.892 22 H 0.036 0.964 23 H 0.057 0.943 24 H 0.027 0.973 25 H 0.265 0.735 26 H 0.344 0.656 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.299 4.551 -14.569 15.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.076 3.924 3 H 0.021 0.979 4 C -0.561 4.561 5 H 0.097 0.903 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.194 1.194 12 N -0.279 5.279 13 C -0.050 4.050 14 H 0.105 0.895 15 C -0.207 4.207 16 H 0.125 0.875 17 C -0.132 4.132 18 C -0.160 4.160 19 C -0.133 4.133 20 C -0.179 4.179 21 H 0.126 0.874 22 H 0.055 0.945 23 H 0.076 0.924 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.164 0.836 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.904 4.282 -14.503 15.149 hybrid contribution 0.125 1.164 0.490 1.269 sum -0.779 5.446 -14.013 15.054 Atomic orbital electron populations 1.22058 0.98567 1.01042 0.97765 1.19585 0.91871 0.92942 0.88011 0.97949 1.21109 1.32442 1.13856 0.88648 0.90340 1.24926 0.95666 0.96751 0.95707 1.69894 1.45514 1.40243 0.97938 0.86786 0.80692 0.83521 0.76768 1.20454 1.22491 1.19373 1.60179 1.32287 1.31020 1.04464 1.22648 0.99626 0.95455 0.87234 0.89525 1.23609 0.92986 1.01147 1.02928 0.87529 1.21928 0.98204 0.97673 0.95374 1.22651 0.94892 1.00854 0.97573 1.21929 0.96943 0.98204 0.96178 1.23481 0.95963 1.00688 0.97721 0.87373 0.94521 0.92397 0.95373 0.92542 0.83564 0.91790 0.91693 0.91890 0.91605 0.91789 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.90 37.16 0.33 -2.81 16 2 C 0.18 4.48 2.15 -68.86 -0.15 4.33 16 3 H 0.00 0.07 6.63 -51.93 -0.34 -0.27 16 4 C -0.52 -14.79 9.17 -34.44 -0.32 -15.11 16 5 H 0.08 2.38 7.86 -52.49 -0.41 1.97 16 6 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 7 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 8 Si 0.89 22.27 24.37 -169.99 -4.14 18.13 16 9 H -0.28 -6.78 6.87 56.52 0.39 -6.39 16 10 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 11 H -0.27 -6.47 6.53 56.52 0.37 -6.10 16 12 N -0.65 -13.68 6.55 -100.96 -0.66 -14.34 16 13 C 0.06 1.10 5.58 -67.72 -0.38 0.72 16 14 H 0.09 1.60 7.60 -51.93 -0.39 1.20 16 15 C -0.19 -2.78 6.74 -89.51 -0.60 -3.38 16 16 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 17 C -0.09 -1.16 6.63 -25.07 -0.17 -1.32 16 18 C -0.12 -1.35 6.91 -24.74 -0.17 -1.52 16 19 C -0.09 -1.19 6.63 -25.07 -0.17 -1.35 16 20 C -0.16 -2.42 6.86 -89.50 -0.61 -3.04 16 21 H 0.11 1.72 8.14 -51.93 -0.42 1.29 16 22 H 0.04 0.86 3.27 -51.93 -0.17 0.69 16 23 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 24 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.34 7.22 8.18 -39.29 -0.32 6.89 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 253.58 15.07 3.82 3.82 Total: -1.00 -29.45 253.58 -7.59 -37.03 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.05 Total: 3.61 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -2.33 Total: -21.50 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.11 Total: -41.09 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.14 Total: 18.13 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.45 -7.59 -37.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306251850.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.911 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds