Wall clock time and date at job start Mon Mar 30 2020 02:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46589 * 89.99875 * 8 6 4 10 10 H 1.48490 * 109.47303 * 209.99928 * 8 6 4 11 11 H 1.48497 * 109.46869 * 330.00523 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46897 * 111.00172 * 84.99810 * 12 2 1 14 14 H 1.08997 * 115.52557 * 9.50038 * 13 12 2 15 15 C 1.52996 * 117.46350 * 155.00478 * 13 12 2 16 16 H 1.09003 * 119.29288 * 355.35497 * 15 13 12 17 17 C 1.54267 * 118.20062 * 201.21433 * 15 13 12 18 18 C 1.54886 * 104.19228 * 272.20664 * 17 15 13 19 19 C 1.54890 * 102.75142 * 37.94384 * 18 17 15 20 20 C 1.53000 * 117.45839 * 224.04567 * 13 12 2 21 21 H 1.09004 * 119.30119 * 3.70728 * 20 13 12 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.97001 * 119.99599 * 179.97438 * 7 6 4 26 26 H 1.00896 * 110.99793 * 208.95333 * 12 2 1 27 27 H 1.08990 * 110.48442 * 30.88502 * 17 15 13 28 28 H 1.09005 * 110.48280 * 153.39845 * 17 15 13 29 29 H 1.09002 * 110.75242 * 156.25765 * 18 17 15 30 30 H 1.09005 * 110.75983 * 279.44187 * 18 17 15 31 31 H 1.09002 * 110.48270 * 80.72972 * 19 18 17 32 32 H 1.08998 * 110.48323 * 203.24220 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 1 1.9245 1.2763 -2.1166 15 6 3.0706 -0.1146 -3.4653 16 1 3.7418 -0.9650 -3.3453 17 6 3.5249 1.0221 -4.4040 18 6 2.4581 1.0367 -5.5268 19 6 1.1468 0.7435 -4.7562 20 6 1.5586 -0.2918 -3.6892 21 1 1.1054 -1.2818 -3.7409 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.9033 -0.5281 4.4375 26 1 2.9173 -1.1204 -1.0288 27 1 3.5337 1.9742 -3.8736 28 1 4.5112 0.8062 -4.8149 29 1 2.4144 2.0151 -6.0053 30 1 2.6600 0.2575 -6.2618 31 1 0.7716 1.6507 -4.2827 32 1 0.3959 0.3254 -5.4266 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306251850.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:53 Heat of formation + Delta-G solvation = 1.252077 kcal Electronic energy + Delta-G solvation = -12355.465753 eV Core-core repulsion = 10315.482130 eV Total energy + Delta-G solvation = -2039.983623 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.45856 -37.24186 -34.41042 -32.40900 -29.49459 -29.05004 -27.14871 -22.99785 -21.72375 -21.28837 -20.51818 -18.87370 -17.21508 -16.94324 -15.82064 -15.48853 -15.08886 -14.85952 -14.17958 -13.99455 -13.81343 -13.25649 -12.93964 -12.70452 -12.30829 -12.12214 -12.08183 -11.93312 -11.66320 -11.46024 -11.29518 -11.02987 -10.80386 -10.43235 -9.06977 -8.35059 -6.40424 1.28878 1.32996 1.44054 2.28039 2.77382 2.99443 3.15349 3.87407 3.92827 4.09968 4.31643 4.36241 4.51344 4.55832 4.63261 4.67290 4.77387 4.85644 4.88442 4.92505 5.00801 5.20147 5.21955 5.23548 5.41522 5.45903 5.53954 5.58251 5.99124 6.44250 6.61160 6.76284 7.26359 8.81412 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.062372 B = 0.008561 C = 0.008200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.813611 B = 3270.018132 C = 3413.653822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.190 3.810 3 H -0.003 1.003 4 C -0.530 4.530 5 H 0.040 0.960 6 C 0.016 3.984 7 N -0.944 5.944 8 Si 0.954 3.046 9 H -0.265 1.265 10 H -0.294 1.294 11 H -0.252 1.252 12 N -0.654 5.654 13 C 0.031 3.969 14 H 0.081 0.919 15 C -0.177 4.177 16 H 0.104 0.896 17 C -0.094 4.094 18 C -0.114 4.114 19 C -0.093 4.093 20 C -0.151 4.151 21 H 0.100 0.900 22 H 0.033 0.967 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.268 0.732 26 H 0.337 0.663 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.131 6.174 -16.777 17.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.081 3.919 3 H 0.015 0.985 4 C -0.568 4.568 5 H 0.058 0.942 6 C -0.182 4.182 7 N -0.584 5.584 8 Si 0.780 3.220 9 H -0.191 1.191 10 H -0.222 1.222 11 H -0.176 1.176 12 N -0.284 5.284 13 C -0.080 4.080 14 H 0.099 0.901 15 C -0.196 4.196 16 H 0.122 0.878 17 C -0.131 4.131 18 C -0.151 4.151 19 C -0.131 4.131 20 C -0.171 4.171 21 H 0.118 0.882 22 H 0.052 0.948 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.157 0.843 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.740 5.905 -16.748 17.844 hybrid contribution 0.468 0.571 1.140 1.358 sum -1.272 6.475 -15.609 16.946 Atomic orbital electron populations 1.21958 0.97190 1.00941 0.98835 1.19407 0.92873 0.92060 0.87575 0.98540 1.21396 1.31770 1.12872 0.90792 0.94178 1.25800 0.97137 1.00081 0.95227 1.70034 1.47359 1.42367 0.98651 0.85774 0.79202 0.79703 0.77278 1.19051 1.22176 1.17620 1.60165 1.32093 1.31756 1.04339 1.22669 1.03634 0.94572 0.87078 0.90080 1.23720 0.92983 1.01902 1.01012 0.87766 1.21997 0.99601 0.96331 0.95204 1.22638 0.93040 1.02437 0.97034 1.21990 0.98303 0.97239 0.95586 1.23558 0.96368 1.00957 0.96200 0.88206 0.94844 0.93146 0.92732 0.92290 0.84317 0.91973 0.90089 0.89841 0.90522 0.91874 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.85 8.90 71.98 0.64 -5.21 16 2 C 0.19 9.20 2.15 44.17 0.10 9.30 16 3 H 0.00 -0.14 6.63 -2.39 -0.02 -0.16 16 4 C -0.53 -30.82 9.17 25.60 0.23 -30.58 16 5 H 0.04 2.56 7.86 -2.91 -0.02 2.54 16 6 C 0.02 0.92 5.45 84.65 0.46 1.38 16 7 N -0.94 -59.35 13.96 21.45 0.30 -59.05 16 8 Si 0.95 45.52 24.37 68.60 1.67 47.19 16 9 H -0.26 -12.03 6.87 99.48 0.68 -11.34 16 10 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 11 H -0.25 -11.27 6.53 99.48 0.65 -10.62 16 12 N -0.65 -27.70 6.55 -473.33 -3.10 -30.80 16 13 C 0.03 1.08 5.58 44.91 0.25 1.33 16 14 H 0.08 2.89 7.60 -2.39 -0.02 2.88 16 15 C -0.18 -4.95 6.74 -10.07 -0.07 -5.02 16 16 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 17 C -0.09 -2.03 6.63 31.67 0.21 -1.82 16 18 C -0.11 -2.07 6.91 31.88 0.22 -1.84 16 19 C -0.09 -2.03 6.63 31.67 0.21 -1.82 16 20 C -0.15 -4.32 6.86 -10.07 -0.07 -4.39 16 21 H 0.10 3.02 8.14 -2.38 -0.02 3.00 16 22 H 0.03 1.49 3.27 -2.39 -0.01 1.48 16 23 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.05 2.11 8.07 -2.38 -0.02 2.09 16 25 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 26 H 0.34 14.61 8.18 -89.70 -0.73 13.88 16 27 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.25 8.14 -2.38 -0.02 1.24 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -63.72 253.58 1.34 -62.38 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.28 Total: 18.96 kcal Atomic # 6 Polarization: -40.87 SS G_CDS: 2.19 Total: -38.68 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -2.80 Total: -89.86 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.67 Total: 47.19 kcal Total: -63.72 1.34 -62.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306251850.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.637 kcal (2) G-P(sol) polarization free energy of solvation -63.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds