Wall clock time and date at job start Mon Mar 30 2020 02:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00368 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00161 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46904 * 110.99716 * 274.99847 * 12 2 1 14 14 H 1.09002 * 115.52716 * 350.58504 * 13 12 2 15 15 C 1.52994 * 117.45875 * 136.07626 * 13 12 2 16 16 H 1.08996 * 119.30380 * 356.29334 * 15 13 12 17 17 C 1.56218 * 117.00023 * 200.70733 * 15 13 12 18 18 C 1.54890 * 104.22451 * 272.14688 * 17 15 13 19 19 C 1.54887 * 102.75100 * 38.32948 * 18 17 15 20 20 C 1.52994 * 117.45913 * 205.08440 * 13 12 2 21 21 H 1.08995 * 119.30133 * 3.70575 * 20 13 12 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 26 26 H 1.00900 * 110.99634 * 38.94573 * 12 2 1 27 27 H 1.08995 * 110.14250 * 153.62101 * 17 15 13 28 28 H 1.08995 * 110.91284 * 31.05031 * 17 15 13 29 29 H 1.09001 * 110.75796 * 280.00926 * 18 17 15 30 30 H 1.09002 * 110.75724 * 156.64473 * 18 17 15 31 31 H 1.09005 * 110.48802 * 203.38076 * 19 18 17 32 32 H 1.08996 * 110.48591 * 80.73333 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2226 2.3469 14 1 1.9232 1.2761 2.1168 15 6 1.5613 -0.2929 3.6898 16 1 1.1098 -1.2836 3.7420 17 6 1.1637 0.7785 4.7548 18 6 2.4815 1.0656 5.5163 19 6 3.5430 1.0277 4.3889 20 6 3.0721 -0.1138 3.4642 21 1 3.7336 -0.9725 3.3502 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7089 1.1613 -3.4844 26 1 1.4495 -1.4979 1.4101 27 1 0.4121 0.3734 5.4323 28 1 0.7948 1.6853 4.2755 29 1 2.6766 0.2899 6.2568 30 1 2.4506 2.0493 5.9848 31 1 4.5278 0.8044 4.7995 32 1 3.5595 1.9742 3.8486 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306251854.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:59 Heat of formation + Delta-G solvation = 14.102346 kcal Electronic energy + Delta-G solvation = -12290.727714 eV Core-core repulsion = 10251.301320 eV Total energy + Delta-G solvation = -2039.426394 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.10757 -35.30713 -32.47776 -30.43011 -27.86958 -27.02406 -25.09691 -21.50207 -20.30763 -19.99366 -19.25634 -16.38668 -15.62638 -14.92065 -14.47132 -13.71615 -13.20373 -12.96154 -12.42497 -12.22235 -11.83167 -11.25498 -10.97132 -10.93982 -10.91192 -10.85273 -10.73734 -10.49475 -10.16376 -9.97757 -9.84130 -9.22356 -8.83695 -8.35596 -7.14006 -5.97880 -4.01135 3.32663 3.40180 3.45845 4.13667 4.42513 4.67046 5.04837 5.09239 5.33863 5.40168 5.51868 5.68462 5.75203 5.85608 5.87732 5.99241 6.02869 6.18366 6.26091 6.40605 6.57700 6.69270 6.73215 6.88861 7.11056 7.38433 7.75367 7.90633 8.28527 8.52274 8.61753 9.06247 9.64160 11.09348 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.071665 B = 0.007673 C = 0.007365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.615138 B = 3648.181624 C = 3800.708819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.212 3.788 3 H 0.035 0.965 4 C -0.496 4.496 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.653 5.653 13 C 0.074 3.926 14 H 0.097 0.903 15 C -0.201 4.201 16 H 0.104 0.896 17 C -0.092 4.092 18 C -0.123 4.123 19 C -0.093 4.093 20 C -0.166 4.166 21 H 0.105 0.895 22 H 0.089 0.911 23 H 0.007 0.993 24 H 0.027 0.973 25 H 0.259 0.741 26 H 0.329 0.671 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.911 0.189 11.947 11.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.105 3.895 3 H 0.053 0.947 4 C -0.535 4.535 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.280 5.280 13 C -0.039 4.039 14 H 0.115 0.885 15 C -0.221 4.221 16 H 0.122 0.878 17 C -0.130 4.130 18 C -0.160 4.160 19 C -0.131 4.131 20 C -0.186 4.186 21 H 0.123 0.877 22 H 0.107 0.893 23 H 0.026 0.974 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.148 0.852 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.506 0.367 11.598 11.701 hybrid contribution -0.681 -0.426 -0.635 1.024 sum 0.825 -0.059 10.963 10.994 Atomic orbital electron populations 1.22451 1.00462 0.99220 1.00612 1.19276 0.89766 0.94387 0.86092 0.94682 1.21198 1.30200 1.12477 0.89611 0.91885 1.24949 0.95326 0.95213 0.99060 1.69898 1.37380 1.23203 1.23254 0.86439 0.78507 0.79656 0.82794 1.19736 1.21189 1.21104 1.60473 1.56814 1.08300 1.02446 1.22675 0.98849 0.96887 0.85461 0.88501 1.24252 0.97913 1.00169 0.99810 0.87752 1.22233 0.96829 0.97763 0.96171 1.22634 0.95058 1.00719 0.97607 1.21910 0.98001 0.97898 0.95289 1.23437 0.91901 1.00857 1.02375 0.87739 0.89274 0.97406 0.95384 0.93108 0.85234 0.92061 0.91694 0.91753 0.91895 0.91783 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.94 37.16 0.33 -3.77 16 2 C 0.21 5.43 2.53 -68.86 -0.17 5.26 16 3 H 0.04 0.99 7.57 -51.93 -0.39 0.59 16 4 C -0.50 -13.96 8.84 -34.44 -0.30 -14.27 16 5 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 6 C 0.05 1.54 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -25.92 11.32 55.43 0.63 -25.29 16 8 Si 0.90 21.70 29.54 -169.99 -5.02 16.67 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 N -0.65 -14.35 6.51 -100.95 -0.66 -15.00 16 13 C 0.07 1.38 5.61 -67.72 -0.38 1.00 16 14 H 0.10 1.92 7.60 -51.93 -0.39 1.52 16 15 C -0.20 -3.14 6.78 -88.48 -0.60 -3.75 16 16 H 0.10 1.60 8.13 -51.93 -0.42 1.18 16 17 C -0.09 -1.21 6.66 -24.01 -0.16 -1.37 16 18 C -0.12 -1.44 6.91 -24.74 -0.17 -1.61 16 19 C -0.09 -1.25 6.63 -25.07 -0.17 -1.41 16 20 C -0.17 -2.67 6.82 -89.54 -0.61 -3.29 16 21 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 22 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 23 H 0.01 0.16 8.07 -51.93 -0.42 -0.26 16 24 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 26 H 0.33 6.87 8.29 -39.29 -0.33 6.54 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 260.68 15.07 3.93 3.93 Total: -1.00 -28.37 260.68 -8.65 -37.01 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.20 Total: 4.44 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -2.33 Total: -21.76 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: -0.03 Total: -40.30 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.37 -8.65 -37.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306251854.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.116 kcal (2) G-P(sol) polarization free energy of solvation -28.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds