Wall clock time and date at job start Mon Mar 30 2020 02:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00368 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00161 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46904 * 110.99716 * 274.99847 * 12 2 1 14 14 H 1.09002 * 115.52716 * 350.58504 * 13 12 2 15 15 C 1.52994 * 117.45875 * 136.07626 * 13 12 2 16 16 H 1.08996 * 119.30380 * 356.29334 * 15 13 12 17 17 C 1.56218 * 117.00023 * 200.70733 * 15 13 12 18 18 C 1.54890 * 104.22451 * 272.14688 * 17 15 13 19 19 C 1.54887 * 102.75100 * 38.32948 * 18 17 15 20 20 C 1.52994 * 117.45913 * 205.08440 * 13 12 2 21 21 H 1.08995 * 119.30133 * 3.70575 * 20 13 12 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 26 26 H 1.00900 * 110.99634 * 38.94573 * 12 2 1 27 27 H 1.08995 * 110.14250 * 153.62101 * 17 15 13 28 28 H 1.08995 * 110.91284 * 31.05031 * 17 15 13 29 29 H 1.09001 * 110.75796 * 280.00926 * 18 17 15 30 30 H 1.09002 * 110.75724 * 156.64473 * 18 17 15 31 31 H 1.09005 * 110.48802 * 203.38076 * 19 18 17 32 32 H 1.08996 * 110.48591 * 80.73333 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2226 2.3469 14 1 1.9232 1.2761 2.1168 15 6 1.5613 -0.2929 3.6898 16 1 1.1098 -1.2836 3.7420 17 6 1.1637 0.7785 4.7548 18 6 2.4815 1.0656 5.5163 19 6 3.5430 1.0277 4.3889 20 6 3.0721 -0.1138 3.4642 21 1 3.7336 -0.9725 3.3502 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7089 1.1613 -3.4844 26 1 1.4495 -1.4979 1.4101 27 1 0.4121 0.3734 5.4323 28 1 0.7948 1.6853 4.2755 29 1 2.6766 0.2899 6.2568 30 1 2.4506 2.0493 5.9848 31 1 4.5278 0.8044 4.7995 32 1 3.5595 1.9742 3.8486 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306251854.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:59 Heat of formation + Delta-G solvation = -2.949303 kcal Electronic energy + Delta-G solvation = -12291.467129 eV Core-core repulsion = 10251.301320 eV Total energy + Delta-G solvation = -2040.165809 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.39665 -37.13042 -34.34674 -31.98693 -28.97038 -28.77418 -27.24252 -22.91347 -22.10112 -21.31189 -20.49120 -18.39421 -17.06145 -16.79111 -15.90515 -15.14118 -14.90775 -14.48486 -13.96821 -13.65700 -13.63555 -13.06085 -12.88324 -12.64325 -12.24275 -12.18041 -12.10817 -11.95309 -11.92200 -11.62246 -11.38433 -10.96536 -10.51743 -10.42518 -8.83372 -8.12142 -6.23980 1.41498 1.42742 1.55694 2.42567 2.82810 3.16069 3.29168 3.89603 3.92918 4.16886 4.28840 4.42620 4.53465 4.60654 4.71195 4.75675 4.85798 4.87960 4.97005 5.07672 5.17668 5.20114 5.22732 5.40669 5.41200 5.54446 5.66641 5.81527 6.24707 6.61732 6.77988 6.90842 7.46179 8.93937 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.071665 B = 0.007673 C = 0.007365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.615138 B = 3648.181624 C = 3800.708819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.219 3.781 3 H 0.000 1.000 4 C -0.519 4.519 5 H 0.054 0.946 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.964 3.036 9 H -0.269 1.269 10 H -0.278 1.278 11 H -0.280 1.280 12 N -0.658 5.658 13 C 0.038 3.962 14 H 0.079 0.921 15 C -0.183 4.183 16 H 0.110 0.890 17 C -0.092 4.092 18 C -0.113 4.113 19 C -0.094 4.094 20 C -0.160 4.160 21 H 0.099 0.901 22 H 0.062 0.938 23 H 0.024 0.976 24 H 0.032 0.968 25 H 0.262 0.738 26 H 0.333 0.667 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.122 -0.321 13.281 13.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.110 3.890 3 H 0.018 0.982 4 C -0.558 4.558 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.789 3.211 9 H -0.194 1.194 10 H -0.203 1.203 11 H -0.206 1.206 12 N -0.286 5.286 13 C -0.074 4.074 14 H 0.097 0.903 15 C -0.203 4.203 16 H 0.128 0.872 17 C -0.130 4.130 18 C -0.151 4.151 19 C -0.132 4.132 20 C -0.179 4.179 21 H 0.117 0.883 22 H 0.081 0.919 23 H 0.043 0.957 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.152 0.848 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.719 -0.141 12.958 13.072 hybrid contribution -0.741 -0.240 -1.005 1.271 sum 0.978 -0.381 11.953 11.999 Atomic orbital electron populations 1.22241 0.99651 0.99278 1.00096 1.18999 0.90262 0.92505 0.87201 0.98182 1.21481 1.30621 1.12568 0.91121 0.92785 1.25747 0.95376 0.95877 1.01980 1.70020 1.37984 1.24227 1.24059 0.85416 0.78123 0.78543 0.78977 1.19366 1.20336 1.20616 1.60371 1.56759 1.08806 1.02693 1.22624 1.03237 0.95510 0.85984 0.90317 1.24345 0.97625 1.00856 0.97468 0.87214 1.22309 0.98318 0.96674 0.95724 1.22619 0.93030 1.02429 0.96982 1.21981 0.99593 0.96320 0.95272 1.23529 0.92353 1.01564 1.00502 0.88279 0.91874 0.95662 0.94875 0.92885 0.84821 0.90052 0.92279 0.90283 0.89895 0.90071 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.60 8.94 71.98 0.64 -6.96 16 2 C 0.22 11.53 2.53 44.17 0.11 11.64 16 3 H 0.00 0.01 7.57 -2.39 -0.02 0.00 16 4 C -0.52 -29.80 8.84 25.60 0.23 -29.57 16 5 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 6 C 0.01 0.47 5.30 84.65 0.45 0.92 16 7 N -0.92 -54.13 11.32 21.45 0.24 -53.89 16 8 Si 0.96 44.70 29.54 68.60 2.03 46.72 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 N -0.66 -29.45 6.51 -473.30 -3.08 -32.53 16 13 C 0.04 1.43 5.61 44.91 0.25 1.69 16 14 H 0.08 3.24 7.60 -2.39 -0.02 3.22 16 15 C -0.18 -5.42 6.78 -9.41 -0.06 -5.49 16 16 H 0.11 3.15 8.13 -2.39 -0.02 3.13 16 17 C -0.09 -2.18 6.66 32.36 0.22 -1.97 16 18 C -0.11 -2.27 6.91 31.88 0.22 -2.05 16 19 C -0.09 -2.31 6.63 31.67 0.21 -2.10 16 20 C -0.16 -4.97 6.82 -10.09 -0.07 -5.04 16 21 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 22 H 0.06 3.47 6.07 -2.39 -0.01 3.45 16 23 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 24 H 0.03 1.55 8.13 -2.38 -0.02 1.53 16 25 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 26 H 0.33 13.99 8.29 -89.69 -0.74 13.25 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -60.96 260.68 1.72 -59.24 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.34 Total: 19.38 kcal Atomic # 6 Polarization: -41.12 SS G_CDS: 2.20 Total: -38.92 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -2.84 Total: -86.42 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -60.96 1.72 -59.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306251854.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.287 kcal (2) G-P(sol) polarization free energy of solvation -60.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds