Wall clock time and date at job start Mon Mar 30 2020 02:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47281 * 2 1 4 4 C 1.50698 * 109.47135 * 120.00166 * 2 1 3 5 5 H 1.08006 * 119.99524 * 116.70340 * 4 2 1 6 6 C 1.37878 * 120.00059 * 296.71036 * 4 2 1 7 7 N 1.31514 * 119.99796 * 352.64805 * 6 4 2 8 8 Si 1.86792 * 119.99828 * 172.64725 * 6 4 2 9 9 H 1.48500 * 109.47526 * 265.07118 * 8 6 4 10 10 H 1.48510 * 109.46929 * 145.07089 * 8 6 4 11 11 H 1.48502 * 109.47313 * 25.07370 * 8 6 4 12 12 N 1.46901 * 109.46695 * 240.00027 * 2 1 3 13 13 C 1.46905 * 111.00015 * 85.00347 * 12 2 1 14 14 H 1.08999 * 115.52624 * 9.49472 * 13 12 2 15 15 C 1.53005 * 117.46041 * 224.03990 * 13 12 2 16 16 H 1.08999 * 119.29308 * 141.09181 * 15 13 12 17 17 C 1.54266 * 118.19525 * 346.01647 * 15 13 12 18 18 C 1.54890 * 104.19529 * 272.20719 * 17 15 13 19 19 C 1.54894 * 102.74717 * 37.94841 * 18 17 15 20 20 C 1.53003 * 117.46112 * 154.99617 * 13 12 2 21 21 H 1.08993 * 119.29512 * 219.83814 * 20 13 12 22 22 H 1.08999 * 109.47030 * 58.16052 * 1 2 3 23 23 H 1.08998 * 109.47195 * 178.16189 * 1 2 3 24 24 H 1.09000 * 109.46810 * 298.15905 * 1 2 3 25 25 H 0.96993 * 119.99910 * 180.02562 * 7 6 4 26 26 H 1.00895 * 111.00289 * 321.04534 * 12 2 1 27 27 H 1.09009 * 110.48415 * 153.53508 * 17 15 13 28 28 H 1.08994 * 110.60083 * 30.94792 * 17 15 13 29 29 H 1.08995 * 110.75774 * 279.63355 * 18 17 15 30 30 H 1.09000 * 110.75628 * 156.25415 * 18 17 15 31 31 H 1.09000 * 110.48811 * 203.37569 * 19 18 17 32 32 H 1.09002 * 110.48525 * 80.73443 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6087 -1.6186 1.1321 6 6 1.7562 -0.2012 2.4816 7 7 1.1818 0.9759 2.6003 8 14 2.1978 -1.1832 4.0080 9 1 1.0162 -1.9648 4.4529 10 1 2.6136 -0.2552 5.0904 11 1 3.3149 -2.1100 3.6943 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2226 -2.3469 14 1 1.9245 1.2762 -2.1166 15 6 1.5585 -0.2919 -3.6893 16 1 0.9987 0.3826 -4.3372 17 6 1.3102 -1.8067 -3.8425 18 6 2.6763 -2.3706 -4.3060 19 6 3.6883 -1.5282 -3.4903 20 6 3.0706 -0.1148 -3.4653 21 1 3.6359 0.6884 -3.9377 22 1 -0.3633 0.5421 -0.8730 23 1 -0.3633 -1.0271 -0.0330 24 1 -0.3633 0.4850 0.9060 25 1 0.9878 1.3344 3.4804 26 1 1.4495 -1.4979 -1.4101 27 1 0.5450 -1.9935 -4.5960 28 1 1.0200 -2.2462 -2.8883 29 1 2.8163 -2.2134 -5.3755 30 1 2.7631 -3.4278 -4.0551 31 1 4.6586 -1.5117 -3.9866 32 1 3.7832 -1.9211 -2.4780 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306251856.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:02 Heat of formation + Delta-G solvation = 16.877568 kcal Electronic energy + Delta-G solvation = -12522.491138 eV Core-core repulsion = 10483.185087 eV Total energy + Delta-G solvation = -2039.306051 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.29122 -35.02499 -32.20999 -30.56231 -27.84422 -27.25456 -25.06211 -21.75874 -20.55884 -19.25188 -18.88828 -16.55806 -15.71898 -14.98538 -14.57846 -13.37752 -13.29004 -12.92015 -12.41592 -12.08735 -11.74084 -11.26317 -11.02016 -10.91355 -10.87601 -10.78161 -10.55176 -10.41436 -10.14126 -9.89037 -9.76663 -9.23441 -8.82946 -8.31323 -7.12387 -5.98461 -3.98727 3.33809 3.40635 3.45177 4.17891 4.45733 4.93244 5.01565 5.15886 5.34540 5.45126 5.54475 5.75456 5.85920 5.87842 6.03874 6.11842 6.18186 6.29575 6.45454 6.50443 6.62330 6.68605 6.82424 6.87777 7.07681 7.38297 7.66574 7.91407 8.26467 8.56145 8.63945 9.07886 9.65263 11.10669 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.054786 B = 0.009027 C = 0.008515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.954427 B = 3101.085823 C = 3287.685865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.210 3.790 3 H 0.040 0.960 4 C -0.496 4.496 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.895 3.105 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.649 5.649 13 C 0.068 3.932 14 H 0.104 0.896 15 C -0.204 4.204 16 H 0.097 0.903 17 C -0.092 4.092 18 C -0.120 4.120 19 C -0.093 4.093 20 C -0.163 4.163 21 H 0.098 0.902 22 H 0.010 0.990 23 H 0.028 0.972 24 H 0.075 0.925 25 H 0.259 0.741 26 H 0.329 0.671 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.671 -3.456 -10.755 11.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.102 3.898 3 H 0.057 0.943 4 C -0.535 4.535 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.723 3.277 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.278 5.278 13 C -0.044 4.044 14 H 0.121 0.879 15 C -0.224 4.224 16 H 0.116 0.884 17 C -0.130 4.130 18 C -0.157 4.157 19 C -0.130 4.130 20 C -0.183 4.183 21 H 0.117 0.883 22 H 0.029 0.971 23 H 0.047 0.953 24 H 0.094 0.906 25 H 0.069 0.931 26 H 0.150 0.850 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.275 -3.273 -10.409 10.986 hybrid contribution -0.816 -0.192 0.560 1.008 sum 0.459 -3.465 -9.849 10.450 Atomic orbital electron populations 1.22399 1.00861 0.98749 1.00256 1.19284 0.89340 0.94809 0.86353 0.94260 1.21127 1.32914 1.09835 0.89622 0.91967 1.24943 0.95611 0.94863 0.98997 1.69950 1.43702 1.16450 1.23460 0.86537 0.78570 0.79933 0.82686 1.20911 1.21405 1.19823 1.60523 1.56587 1.08387 1.02349 1.22652 0.99146 0.96759 0.85867 0.87857 1.23744 0.98079 0.96908 1.03691 0.88448 1.21801 0.96973 0.93383 1.00848 1.22625 0.94890 0.98998 0.99218 1.21832 0.96820 0.93209 1.01151 1.23437 0.91218 0.98481 1.05154 0.88349 0.97105 0.95318 0.90601 0.93097 0.85022 0.92156 0.91229 0.92265 0.91935 0.92602 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 9.00 37.16 0.33 -3.57 16 2 C 0.21 5.30 2.42 -68.86 -0.17 5.13 16 3 H 0.04 1.10 7.57 -51.93 -0.39 0.71 16 4 C -0.50 -13.83 8.79 -34.44 -0.30 -14.13 16 5 H 0.06 1.75 7.83 -52.48 -0.41 1.34 16 6 C 0.06 1.59 5.21 -17.82 -0.09 1.49 16 7 N -0.90 -25.95 11.91 55.43 0.66 -25.29 16 8 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.65 -13.92 5.46 -100.95 -0.55 -14.47 16 13 C 0.07 1.27 6.04 -67.71 -0.41 0.86 16 14 H 0.10 1.99 7.60 -51.93 -0.39 1.60 16 15 C -0.20 -3.18 6.92 -89.50 -0.62 -3.80 16 16 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 17 C -0.09 -1.31 6.40 -25.07 -0.16 -1.47 16 18 C -0.12 -1.58 6.91 -24.74 -0.17 -1.75 16 19 C -0.09 -1.39 6.46 -25.07 -0.16 -1.55 16 20 C -0.16 -2.62 6.94 -89.50 -0.62 -3.24 16 21 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 22 H 0.01 0.22 8.10 -51.93 -0.42 -0.20 16 23 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 24 H 0.08 2.00 6.59 -51.93 -0.34 1.66 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.33 6.73 5.96 -39.29 -0.23 6.49 16 27 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 28 H 0.07 1.07 6.01 -51.93 -0.31 0.76 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.47 7.43 -51.93 -0.39 1.08 16 LS Contribution 255.67 15.07 3.85 3.85 Total: -1.00 -28.17 255.67 -8.42 -36.58 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -4.98 Total: 4.74 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -2.37 Total: -22.03 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.11 Total: -39.75 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.17 -8.42 -36.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306251856.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.460 kcal (2) G-P(sol) polarization free energy of solvation -28.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds