Wall clock time and date at job start Mon Mar 30 2020 02:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47281 * 2 1 4 4 C 1.50698 * 109.47135 * 120.00166 * 2 1 3 5 5 H 1.08006 * 119.99524 * 116.70340 * 4 2 1 6 6 C 1.37878 * 120.00059 * 296.71036 * 4 2 1 7 7 N 1.31514 * 119.99796 * 352.64805 * 6 4 2 8 8 Si 1.86792 * 119.99828 * 172.64725 * 6 4 2 9 9 H 1.48500 * 109.47526 * 265.07118 * 8 6 4 10 10 H 1.48510 * 109.46929 * 145.07089 * 8 6 4 11 11 H 1.48502 * 109.47313 * 25.07370 * 8 6 4 12 12 N 1.46901 * 109.46695 * 240.00027 * 2 1 3 13 13 C 1.46905 * 111.00015 * 85.00347 * 12 2 1 14 14 H 1.08999 * 115.52624 * 9.49472 * 13 12 2 15 15 C 1.53005 * 117.46041 * 224.03990 * 13 12 2 16 16 H 1.08999 * 119.29308 * 141.09181 * 15 13 12 17 17 C 1.54266 * 118.19525 * 346.01647 * 15 13 12 18 18 C 1.54890 * 104.19529 * 272.20719 * 17 15 13 19 19 C 1.54894 * 102.74717 * 37.94841 * 18 17 15 20 20 C 1.53003 * 117.46112 * 154.99617 * 13 12 2 21 21 H 1.08993 * 119.29512 * 219.83814 * 20 13 12 22 22 H 1.08999 * 109.47030 * 58.16052 * 1 2 3 23 23 H 1.08998 * 109.47195 * 178.16189 * 1 2 3 24 24 H 1.09000 * 109.46810 * 298.15905 * 1 2 3 25 25 H 0.96993 * 119.99910 * 180.02562 * 7 6 4 26 26 H 1.00895 * 111.00289 * 321.04534 * 12 2 1 27 27 H 1.09009 * 110.48415 * 153.53508 * 17 15 13 28 28 H 1.08994 * 110.60083 * 30.94792 * 17 15 13 29 29 H 1.08995 * 110.75774 * 279.63355 * 18 17 15 30 30 H 1.09000 * 110.75628 * 156.25415 * 18 17 15 31 31 H 1.09000 * 110.48811 * 203.37569 * 19 18 17 32 32 H 1.09002 * 110.48525 * 80.73443 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6087 -1.6186 1.1321 6 6 1.7562 -0.2012 2.4816 7 7 1.1818 0.9759 2.6003 8 14 2.1978 -1.1832 4.0080 9 1 1.0162 -1.9648 4.4529 10 1 2.6136 -0.2552 5.0904 11 1 3.3149 -2.1100 3.6943 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2226 -2.3469 14 1 1.9245 1.2762 -2.1166 15 6 1.5585 -0.2919 -3.6893 16 1 0.9987 0.3826 -4.3372 17 6 1.3102 -1.8067 -3.8425 18 6 2.6763 -2.3706 -4.3060 19 6 3.6883 -1.5282 -3.4903 20 6 3.0706 -0.1148 -3.4653 21 1 3.6359 0.6884 -3.9377 22 1 -0.3633 0.5421 -0.8730 23 1 -0.3633 -1.0271 -0.0330 24 1 -0.3633 0.4850 0.9060 25 1 0.9878 1.3344 3.4804 26 1 1.4495 -1.4979 -1.4101 27 1 0.5450 -1.9935 -4.5960 28 1 1.0200 -2.2462 -2.8883 29 1 2.8163 -2.2134 -5.3755 30 1 2.7631 -3.4278 -4.0551 31 1 4.6586 -1.5117 -3.9866 32 1 3.7832 -1.9211 -2.4780 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306251856.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:02 Heat of formation + Delta-G solvation = 0.514291 kcal Electronic energy + Delta-G solvation = -12523.200703 eV Core-core repulsion = 10483.185087 eV Total energy + Delta-G solvation = -2040.015616 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.60860 -36.87280 -34.09458 -32.03577 -29.13207 -28.93169 -27.19163 -23.02238 -22.48026 -20.47329 -20.29104 -18.45808 -17.26614 -16.52253 -16.42233 -14.98917 -14.71130 -14.60808 -13.96541 -13.60871 -13.50725 -13.11973 -12.82436 -12.57447 -12.26518 -12.20340 -12.15108 -11.88990 -11.83654 -11.47724 -11.28234 -10.96936 -10.50992 -10.33195 -8.78504 -8.12111 -6.20530 1.42399 1.42963 1.54542 2.43902 2.86746 3.17664 3.52498 3.70851 3.95486 4.20789 4.35234 4.50792 4.62139 4.68832 4.71690 4.72716 4.86328 4.95516 5.04428 5.06703 5.17949 5.25138 5.31612 5.43318 5.46141 5.65393 5.66446 5.78220 6.24654 6.67756 6.85313 6.94653 7.48344 8.95800 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.054786 B = 0.009027 C = 0.008515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.954427 B = 3101.085823 C = 3287.685865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.215 3.785 3 H 0.003 0.997 4 C -0.515 4.515 5 H 0.054 0.946 6 C 0.009 3.991 7 N -0.924 5.924 8 Si 0.959 3.041 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.269 1.269 12 N -0.650 5.650 13 C 0.029 3.971 14 H 0.087 0.913 15 C -0.183 4.183 16 H 0.115 0.885 17 C -0.096 4.096 18 C -0.111 4.111 19 C -0.095 4.095 20 C -0.157 4.157 21 H 0.113 0.887 22 H 0.027 0.973 23 H 0.036 0.964 24 H 0.048 0.952 25 H 0.261 0.739 26 H 0.333 0.667 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.776 -4.637 -12.069 12.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.107 3.893 3 H 0.021 0.979 4 C -0.554 4.554 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.564 5.564 8 Si 0.785 3.215 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.194 1.194 12 N -0.280 5.280 13 C -0.082 4.082 14 H 0.105 0.895 15 C -0.203 4.203 16 H 0.133 0.867 17 C -0.133 4.133 18 C -0.149 4.149 19 C -0.133 4.133 20 C -0.177 4.177 21 H 0.131 0.869 22 H 0.046 0.954 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.154 0.846 27 H 0.102 0.898 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.383 -4.458 -11.747 12.641 hybrid contribution -0.832 0.212 0.912 1.252 sum 0.551 -4.246 -10.836 11.651 Atomic orbital electron populations 1.22194 0.99930 0.99070 0.99599 1.19016 0.89935 0.92845 0.87528 0.97934 1.21422 1.33141 1.09767 0.91080 0.92769 1.25727 0.95533 0.95719 1.01938 1.70069 1.44465 1.17709 1.24166 0.85521 0.78526 0.78535 0.78905 1.20043 1.21031 1.19392 1.60419 1.56493 1.08760 1.02351 1.22636 1.03487 0.95664 0.86448 0.89491 1.23838 0.97829 0.98146 1.00514 0.86742 1.21888 0.98467 0.92063 1.00905 1.22604 0.93137 0.99125 0.99987 1.21861 0.98453 0.92701 1.00290 1.23568 0.91964 0.99511 1.02608 0.86935 0.95355 0.94516 0.93331 0.92992 0.84593 0.89807 0.92722 0.90165 0.90899 0.90827 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.20 9.00 71.98 0.65 -6.56 16 2 C 0.22 11.19 2.42 44.17 0.11 11.30 16 3 H 0.00 0.16 7.57 -2.39 -0.02 0.14 16 4 C -0.52 -29.27 8.79 25.60 0.23 -29.04 16 5 H 0.05 3.09 7.83 -2.91 -0.02 3.07 16 6 C 0.01 0.51 5.21 84.65 0.44 0.95 16 7 N -0.92 -54.51 11.91 21.45 0.26 -54.26 16 8 Si 0.96 44.61 29.54 68.60 2.03 46.63 16 9 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 N -0.65 -28.27 5.46 -473.28 -2.59 -30.85 16 13 C 0.03 1.09 6.04 44.92 0.27 1.36 16 14 H 0.09 3.47 7.60 -2.39 -0.02 3.45 16 15 C -0.18 -5.31 6.92 -10.07 -0.07 -5.38 16 16 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 17 C -0.10 -2.45 6.40 31.67 0.20 -2.25 16 18 C -0.11 -2.56 6.91 31.89 0.22 -2.34 16 19 C -0.10 -2.68 6.46 31.67 0.20 -2.47 16 20 C -0.16 -4.78 6.94 -10.07 -0.07 -4.85 16 21 H 0.11 3.08 8.14 -2.39 -0.02 3.07 16 22 H 0.03 1.22 8.10 -2.39 -0.02 1.20 16 23 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 24 H 0.05 2.61 6.59 -2.39 -0.02 2.59 16 25 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.33 13.63 5.96 -89.70 -0.53 13.10 16 27 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.05 1.58 6.01 -2.39 -0.01 1.57 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 1.95 7.43 -2.39 -0.02 1.94 16 Total: -1.00 -60.52 255.67 2.43 -58.09 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.55 Total: 19.66 kcal Atomic # 6 Polarization: -41.45 SS G_CDS: 2.18 Total: -39.27 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -2.33 Total: -85.11 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -60.52 2.43 -58.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306251856.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.601 kcal (2) G-P(sol) polarization free energy of solvation -60.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds