Wall clock time and date at job start Mon Mar 30 2020 02:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47187 * 2 1 4 4 C 1.50703 * 109.46755 * 240.00401 * 2 1 3 5 5 H 1.08005 * 119.99881 * 240.00446 * 4 2 1 6 6 C 1.37874 * 120.00462 * 60.00247 * 4 2 1 7 7 N 1.31520 * 119.99580 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00294 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47163 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.46989 * 119.99778 * 8 6 4 11 11 H 1.48500 * 109.47258 * 239.99822 * 8 6 4 12 12 N 1.46901 * 109.47178 * 120.00546 * 2 1 3 13 13 C 1.49817 * 111.67557 * 204.09271 * 12 2 1 14 14 C 1.53582 * 86.20270 * 137.92774 * 13 12 2 15 15 H 1.08999 * 115.42557 * 92.88577 * 14 13 12 16 16 C 1.53629 * 114.58397 * 229.71048 * 14 13 12 17 17 C 1.53477 * 107.32611 * 77.26330 * 16 14 13 18 18 C 1.53539 * 107.36371 * 359.15658 * 17 16 14 19 19 C 1.48190 * 110.99722 * 302.98047 * 12 2 1 20 20 H 1.08998 * 116.59012 * 102.91393 * 19 12 2 21 21 H 1.09006 * 109.46623 * 299.99808 * 1 2 3 22 22 H 1.09003 * 109.47091 * 59.99180 * 1 2 3 23 23 H 1.08992 * 109.47187 * 180.02562 * 1 2 3 24 24 H 0.96997 * 119.99989 * 179.97438 * 7 6 4 25 25 H 1.08998 * 113.63844 * 23.60701 * 13 12 2 26 26 H 1.09004 * 113.94738 * 252.28084 * 13 12 2 27 27 H 1.08995 * 109.88822 * 317.85816 * 16 14 13 28 28 H 1.09006 * 109.97281 * 196.71801 * 16 14 13 29 29 H 1.08991 * 109.89197 * 239.66906 * 17 16 14 30 30 H 1.09002 * 109.88593 * 118.63562 * 17 16 14 31 31 H 1.08998 * 110.11026 * 136.80154 * 18 17 16 32 32 H 1.09007 * 110.10272 * 258.42325 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5886 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 3.1463 -2.2869 -3.6039 10 1 1.1658 -1.5864 -4.8161 11 1 3.1465 -0.1872 -4.8166 12 7 2.0197 -0.6926 1.1994 13 6 3.4024 -0.2495 1.5685 14 6 2.9041 -0.2485 3.0212 15 1 3.0726 -1.1725 3.5743 16 6 3.2143 1.0374 3.8025 17 6 2.2078 2.1029 3.3470 18 6 1.3113 1.4597 2.2793 19 6 1.4867 -0.0635 2.4307 20 1 0.6677 -0.5826 2.9285 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 0.7088 1.1615 -3.4843 25 1 3.6593 0.7405 1.1916 26 1 4.1735 -0.9937 1.3691 27 1 4.2290 1.3691 3.5828 28 1 3.1052 0.8586 4.8722 29 1 2.7373 2.9555 2.9221 30 1 1.6023 2.4268 4.1935 31 1 0.2705 1.7356 2.4482 32 1 1.6268 1.7762 1.2851 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306273699.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:10 Heat of formation + Delta-G solvation = 32.852831 kcal Electronic energy + Delta-G solvation = -12977.378578 eV Core-core repulsion = 10938.765267 eV Total energy + Delta-G solvation = -2038.613311 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.32513 -34.37105 -32.51877 -30.47971 -27.95412 -25.75149 -24.59762 -23.74563 -20.99371 -19.08362 -17.62313 -16.46406 -15.67263 -14.90387 -14.70205 -14.02871 -13.21234 -12.80048 -12.32260 -12.10047 -11.61287 -11.46816 -11.05722 -10.93042 -10.61020 -10.51167 -10.45032 -10.26901 -10.14057 -9.73874 -9.59508 -9.22398 -8.91595 -8.38456 -7.48975 -5.97222 -4.00557 3.31790 3.39421 3.45083 4.43995 4.68636 4.94813 5.05800 5.33475 5.46470 5.64577 5.83080 5.90114 5.93875 6.02895 6.11885 6.21895 6.33456 6.44640 6.49146 6.61858 6.71660 6.76472 6.87017 6.95532 7.17693 7.44533 7.51907 7.87426 8.11988 8.35046 8.60064 9.05994 9.63816 11.09589 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.058772 B = 0.010732 C = 0.010052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.301806 B = 2608.300516 C = 2784.846489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.177 3.823 3 H 0.016 0.984 4 C -0.495 4.495 5 H 0.060 0.940 6 C 0.056 3.944 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.467 5.467 13 C 0.022 3.978 14 C -0.124 4.124 15 H 0.093 0.907 16 C -0.114 4.114 17 C -0.118 4.118 18 C -0.148 4.148 19 C 0.029 3.971 20 H 0.091 0.909 21 H 0.013 0.987 22 H 0.084 0.916 23 H 0.030 0.970 24 H 0.259 0.741 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.394 1.472 9.653 10.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.070 3.930 3 H 0.033 0.967 4 C -0.534 4.534 5 H 0.079 0.921 6 C -0.145 4.145 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.189 5.189 13 C -0.107 4.107 14 C -0.143 4.143 15 H 0.111 0.889 16 C -0.152 4.152 17 C -0.156 4.156 18 C -0.186 4.186 19 C -0.081 4.081 20 H 0.109 0.891 21 H 0.032 0.968 22 H 0.103 0.897 23 H 0.050 0.950 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.166 0.889 9.323 9.613 hybrid contribution 0.309 0.496 -0.890 1.064 sum 2.475 1.385 8.433 8.898 Atomic orbital electron populations 1.21873 0.97817 0.99563 1.00255 1.19794 0.92606 0.92883 0.87706 0.96718 1.21127 1.30481 1.12086 0.89697 0.92150 1.24942 0.95345 0.95158 0.99009 1.69899 1.37263 1.23218 1.23186 0.86473 0.78571 0.79664 0.82912 1.19759 1.21083 1.21189 1.69241 1.01669 1.46437 1.01548 1.23865 0.94634 0.99564 0.92650 1.23568 0.97483 0.97528 0.95733 0.88919 1.21884 0.99006 0.95118 0.99166 1.21941 0.97245 0.98080 0.98383 1.22636 0.99474 0.95732 1.00799 1.23957 0.96206 0.93004 0.94946 0.89082 0.96829 0.89712 0.95049 0.93144 0.91911 0.90817 0.92119 0.92357 0.92378 0.92528 0.92054 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.67 37.16 0.32 -3.11 16 2 C 0.18 4.54 1.39 -68.86 -0.10 4.44 16 3 H 0.02 0.42 5.27 -51.93 -0.27 0.15 16 4 C -0.50 -14.06 8.72 -34.44 -0.30 -14.36 16 5 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.91 11.32 55.43 0.63 -25.28 16 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.81 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 N -0.47 -10.46 6.02 -218.05 -1.31 -11.77 16 13 C 0.02 0.43 7.14 -1.90 -0.01 0.41 16 14 C -0.12 -2.03 4.97 -89.13 -0.44 -2.47 16 15 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 16 C -0.11 -1.57 6.35 -26.16 -0.17 -1.74 16 17 C -0.12 -1.72 6.76 -26.20 -0.18 -1.89 16 18 C -0.15 -2.63 4.33 -25.89 -0.11 -2.74 16 19 C 0.03 0.54 4.38 -65.57 -0.29 0.25 16 20 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 21 H 0.01 0.29 5.66 -51.93 -0.29 0.00 16 22 H 0.08 2.31 6.07 -51.93 -0.32 2.00 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.06 1.27 7.20 -51.93 -0.37 0.90 16 26 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 1.04 7.65 -51.93 -0.40 0.64 16 32 H 0.09 1.88 4.76 -51.93 -0.25 1.63 16 LS Contribution 244.08 15.07 3.68 3.68 Total: -1.00 -28.92 244.08 -8.22 -37.14 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -4.83 Total: -0.86 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -1.37 Total: -19.72 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: -0.69 Total: -37.06 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -28.92 -8.22 -37.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306273699.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.995 kcal (2) G-P(sol) polarization free energy of solvation -28.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds