Wall clock time and date at job start Mon Mar 30 2020 02:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47187 * 2 1 4 4 C 1.50703 * 109.46755 * 240.00401 * 2 1 3 5 5 H 1.08005 * 119.99881 * 240.00446 * 4 2 1 6 6 C 1.37874 * 120.00462 * 60.00247 * 4 2 1 7 7 N 1.31520 * 119.99580 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00294 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47163 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.46989 * 119.99778 * 8 6 4 11 11 H 1.48500 * 109.47258 * 239.99822 * 8 6 4 12 12 N 1.46901 * 109.47178 * 120.00546 * 2 1 3 13 13 C 1.49817 * 111.67557 * 204.09271 * 12 2 1 14 14 C 1.53582 * 86.20270 * 137.92774 * 13 12 2 15 15 H 1.08999 * 115.42557 * 92.88577 * 14 13 12 16 16 C 1.53629 * 114.58397 * 229.71048 * 14 13 12 17 17 C 1.53477 * 107.32611 * 77.26330 * 16 14 13 18 18 C 1.53539 * 107.36371 * 359.15658 * 17 16 14 19 19 C 1.48190 * 110.99722 * 302.98047 * 12 2 1 20 20 H 1.08998 * 116.59012 * 102.91393 * 19 12 2 21 21 H 1.09006 * 109.46623 * 299.99808 * 1 2 3 22 22 H 1.09003 * 109.47091 * 59.99180 * 1 2 3 23 23 H 1.08992 * 109.47187 * 180.02562 * 1 2 3 24 24 H 0.96997 * 119.99989 * 179.97438 * 7 6 4 25 25 H 1.08998 * 113.63844 * 23.60701 * 13 12 2 26 26 H 1.09004 * 113.94738 * 252.28084 * 13 12 2 27 27 H 1.08995 * 109.88822 * 317.85816 * 16 14 13 28 28 H 1.09006 * 109.97281 * 196.71801 * 16 14 13 29 29 H 1.08991 * 109.89197 * 239.66906 * 17 16 14 30 30 H 1.09002 * 109.88593 * 118.63562 * 17 16 14 31 31 H 1.08998 * 110.11026 * 136.80154 * 18 17 16 32 32 H 1.09007 * 110.10272 * 258.42325 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5886 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 3.1463 -2.2869 -3.6039 10 1 1.1658 -1.5864 -4.8161 11 1 3.1465 -0.1872 -4.8166 12 7 2.0197 -0.6926 1.1994 13 6 3.4024 -0.2495 1.5685 14 6 2.9041 -0.2485 3.0212 15 1 3.0726 -1.1725 3.5743 16 6 3.2143 1.0374 3.8025 17 6 2.2078 2.1029 3.3470 18 6 1.3113 1.4597 2.2793 19 6 1.4867 -0.0635 2.4307 20 1 0.6677 -0.5826 2.9285 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 0.7088 1.1615 -3.4843 25 1 3.6593 0.7405 1.1916 26 1 4.1735 -0.9937 1.3691 27 1 4.2290 1.3691 3.5828 28 1 3.1052 0.8586 4.8722 29 1 2.7373 2.9555 2.9221 30 1 1.6023 2.4268 4.1935 31 1 0.2705 1.7356 2.4482 32 1 1.6268 1.7762 1.2851 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306273699.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:09 Heat of formation + Delta-G solvation = 13.945708 kcal Electronic energy + Delta-G solvation = -12978.198452 eV Core-core repulsion = 10938.765267 eV Total energy + Delta-G solvation = -2039.433186 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.83348 -36.18551 -34.22801 -32.28287 -29.48736 -27.54319 -26.47505 -25.29762 -22.65665 -20.59394 -19.15142 -18.40405 -17.26255 -16.71831 -16.26012 -15.70252 -14.96301 -14.34622 -13.88890 -13.66911 -13.32515 -13.27459 -12.92374 -12.65208 -12.43541 -12.21692 -12.00006 -11.95919 -11.74799 -11.21614 -11.10755 -10.92919 -10.84440 -10.51132 -9.26437 -8.12877 -6.24340 1.37645 1.39177 1.51722 2.40469 3.13510 3.25240 3.54744 3.77391 4.16947 4.30379 4.42323 4.50908 4.63176 4.65111 4.77561 4.82226 4.92584 4.98671 5.01741 5.09081 5.14548 5.22901 5.28558 5.44734 5.51375 5.54981 5.60870 5.72274 6.12818 6.30178 6.65952 6.88921 7.44292 8.92628 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.058772 B = 0.010732 C = 0.010052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.301806 B = 2608.300516 C = 2784.846489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.185 3.815 3 H -0.009 1.009 4 C -0.519 4.519 5 H 0.047 0.953 6 C 0.010 3.990 7 N -0.920 5.920 8 Si 0.959 3.041 9 H -0.271 1.271 10 H -0.279 1.279 11 H -0.278 1.278 12 N -0.492 5.492 13 C 0.015 3.985 14 C -0.102 4.102 15 H 0.111 0.889 16 C -0.107 4.107 17 C -0.114 4.114 18 C -0.146 4.146 19 C 0.020 3.980 20 H 0.100 0.900 21 H 0.036 0.964 22 H 0.058 0.942 23 H 0.021 0.979 24 H 0.261 0.739 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.953 1.311 11.124 11.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.077 3.923 3 H 0.008 0.992 4 C -0.557 4.557 5 H 0.065 0.935 6 C -0.189 4.189 7 N -0.560 5.560 8 Si 0.785 3.215 9 H -0.195 1.195 10 H -0.204 1.204 11 H -0.204 1.204 12 N -0.214 5.214 13 C -0.114 4.114 14 C -0.120 4.120 15 H 0.129 0.871 16 C -0.145 4.145 17 C -0.152 4.152 18 C -0.185 4.185 19 C -0.089 4.089 20 H 0.118 0.882 21 H 0.055 0.945 22 H 0.077 0.923 23 H 0.040 0.960 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.728 0.729 10.808 11.171 hybrid contribution 0.122 0.549 -1.331 1.445 sum 2.850 1.279 9.477 9.979 Atomic orbital electron populations 1.21689 0.97759 0.98713 1.00069 1.19549 0.92552 0.91560 0.88612 0.99173 1.21406 1.30823 1.12037 0.91453 0.93507 1.25712 0.95454 0.95853 1.01842 1.70016 1.37843 1.24185 1.23938 0.85487 0.78173 0.78608 0.79254 1.19532 1.20436 1.20383 1.69148 1.03682 1.46933 1.01643 1.23903 0.93361 0.98722 0.95378 1.23479 0.94607 0.99863 0.94079 0.87059 1.21882 0.99185 0.93064 1.00392 1.21936 0.97122 0.98127 0.97993 1.22546 1.00486 0.95425 1.00016 1.24141 0.98063 0.93374 0.93343 0.88248 0.94515 0.92307 0.95973 0.92940 0.93289 0.90750 0.91208 0.89324 0.92258 0.90031 0.91657 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.35 8.67 71.98 0.62 -5.72 16 2 C 0.18 9.73 1.39 44.17 0.06 9.80 16 3 H -0.01 -0.51 5.27 -2.39 -0.01 -0.52 16 4 C -0.52 -30.16 8.72 25.60 0.22 -29.93 16 5 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 6 C 0.01 0.55 5.30 84.65 0.45 1.00 16 7 N -0.92 -54.25 11.32 21.45 0.24 -54.01 16 8 Si 0.96 45.24 29.54 68.60 2.03 47.27 16 9 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 12 N -0.49 -22.11 6.02 -843.79 -5.08 -27.19 16 13 C 0.02 0.59 7.14 85.92 0.61 1.20 16 14 C -0.10 -3.06 4.97 -9.81 -0.05 -3.11 16 15 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 16 C -0.11 -2.57 6.35 30.97 0.20 -2.37 16 17 C -0.11 -2.98 6.76 30.94 0.21 -2.77 16 18 C -0.15 -5.05 4.33 31.14 0.13 -4.92 16 19 C 0.02 0.73 4.38 45.59 0.20 0.93 16 20 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 21 H 0.04 1.64 5.66 -2.38 -0.01 1.63 16 22 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 23 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 25 H 0.05 2.02 7.20 -2.39 -0.02 2.00 16 26 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 27 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.06 2.14 7.65 -2.39 -0.02 2.12 16 32 H 0.05 2.24 4.76 -2.38 -0.01 2.23 16 Total: -1.00 -62.78 244.08 0.94 -61.84 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 1.08 Total: 7.98 kcal Atomic # 6 Polarization: -38.56 SS G_CDS: 2.66 Total: -35.89 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -4.84 Total: -81.20 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -62.78 0.94 -61.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306273699.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.785 kcal (2) G-P(sol) polarization free energy of solvation -62.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds