Wall clock time and date at job start Mon Mar 30 2020 02:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 N 1.46895 * 109.47363 * 120.00320 * 2 1 3 13 13 C 1.47460 * 111.00476 * 201.52888 * 12 2 1 14 14 C 1.53594 * 88.06009 * 139.06143 * 13 12 2 15 15 H 1.09000 * 116.63151 * 215.93990 * 14 13 12 16 16 C 1.53716 * 113.24447 * 78.28928 * 14 13 12 17 17 C 1.53522 * 107.28139 * 253.36569 * 16 14 13 18 18 C 1.53633 * 107.18604 * 359.61844 * 17 16 14 19 19 C 1.47258 * 110.99731 * 297.58954 * 12 2 1 20 20 H 1.08997 * 115.49917 * 338.98817 * 19 12 2 21 21 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 22 22 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 23 23 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 25 25 H 1.08999 * 113.45457 * 253.86241 * 13 12 2 26 26 H 1.09000 * 113.45030 * 24.20379 * 13 12 2 27 27 H 1.08996 * 109.88404 * 12.78485 * 16 14 13 28 28 H 1.09004 * 109.88306 * 133.79721 * 16 14 13 29 29 H 1.09001 * 109.90289 * 119.01133 * 17 16 14 30 30 H 1.08998 * 109.90068 * 240.22807 * 17 16 14 31 31 H 1.09004 * 110.12963 * 137.08541 * 18 17 16 32 32 H 1.09000 * 110.13274 * 258.71774 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 3.1365 -2.2939 -3.6038 10 1 1.1525 -1.5961 -4.8105 11 1 3.1331 -0.1969 -4.8221 12 7 2.0197 -0.6925 1.1993 13 6 3.4032 -0.2908 1.5138 14 6 3.0028 -0.2631 2.9964 15 1 3.4607 0.5113 3.6118 16 6 2.9367 -1.6606 3.6331 17 6 1.4528 -2.0047 3.8247 18 6 0.6391 -0.8073 3.3105 19 6 1.5953 0.0078 2.4233 20 1 1.3253 1.0559 2.2945 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7011 1.1560 -3.4844 25 1 4.1417 -1.0570 1.2781 26 1 3.6712 0.6886 1.1174 27 1 3.4043 -2.3912 2.9731 28 1 3.4452 -1.6532 4.5972 29 1 1.2019 -2.8973 3.2515 30 1 1.2435 -2.1690 4.8817 31 1 -0.2114 -1.1557 2.7243 32 1 0.2940 -0.2009 4.1479 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306273704.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:13 Heat of formation + Delta-G solvation = 25.678124 kcal Electronic energy + Delta-G solvation = -12881.502806 eV Core-core repulsion = 10842.578376 eV Total energy + Delta-G solvation = -2038.924430 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.24372 -34.59623 -32.58696 -30.27640 -28.17543 -25.78803 -24.86999 -23.23709 -20.42429 -19.58140 -18.02318 -16.45342 -15.57103 -14.78455 -14.41306 -13.92073 -13.13185 -12.91183 -12.59100 -12.29735 -11.37502 -11.33595 -11.09028 -10.86802 -10.67910 -10.50970 -10.44881 -10.13638 -10.10402 -9.79656 -9.62975 -9.30267 -8.91627 -8.40116 -7.63244 -5.98244 -4.02182 3.31120 3.38739 3.44273 4.43585 4.71704 4.89725 5.16670 5.32718 5.54386 5.68757 5.83219 5.92757 6.00638 6.10564 6.26203 6.36575 6.43787 6.46192 6.48892 6.58018 6.75070 6.79004 6.83195 6.91522 7.08869 7.43192 7.51403 7.86155 8.11215 8.34756 8.58349 9.04569 9.62523 11.08623 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.056158 B = 0.010500 C = 0.009838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.475349 B = 2665.960108 C = 2845.512177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.179 3.821 3 H 0.004 0.996 4 C -0.495 4.495 5 H 0.061 0.939 6 C 0.056 3.944 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 N -0.452 5.452 13 C 0.020 3.980 14 C -0.136 4.136 15 H 0.079 0.921 16 C -0.091 4.091 17 C -0.109 4.109 18 C -0.103 4.103 19 C 0.023 3.977 20 H 0.074 0.926 21 H 0.007 0.993 22 H 0.084 0.916 23 H 0.032 0.968 24 H 0.259 0.741 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.826 -1.837 10.092 10.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.072 3.928 3 H 0.022 0.978 4 C -0.534 4.534 5 H 0.079 0.921 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.175 5.175 13 C -0.109 4.109 14 C -0.155 4.155 15 H 0.097 0.903 16 C -0.128 4.128 17 C -0.146 4.146 18 C -0.141 4.141 19 C -0.087 4.087 20 H 0.092 0.908 21 H 0.026 0.974 22 H 0.103 0.897 23 H 0.051 0.949 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.550 -2.438 9.794 10.211 hybrid contribution 0.385 0.574 -1.013 1.226 sum 1.934 -1.864 8.781 9.183 Atomic orbital electron populations 1.21779 0.97746 0.99523 0.99917 1.19780 0.92764 0.92389 0.87902 0.97817 1.21094 1.30477 1.12192 0.89637 0.92108 1.24949 0.95297 0.95142 0.99043 1.69904 1.37184 1.23225 1.23206 0.86466 0.78555 0.79665 0.82880 1.19752 1.21073 1.21171 1.68829 1.02439 1.44906 1.01344 1.23547 0.94770 0.99785 0.92833 1.23429 0.98358 0.97526 0.96185 0.90250 1.21585 0.96597 0.95632 0.98998 1.21805 0.94846 0.98822 0.99144 1.21835 0.98379 0.96291 0.97590 1.23876 0.94050 0.96823 0.93926 0.90836 0.97412 0.89700 0.94895 0.93120 0.91091 0.92260 0.91445 0.93058 0.91852 0.93080 0.91584 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 8.91 37.16 0.33 -2.98 16 2 C 0.18 4.64 1.70 -68.87 -0.12 4.52 16 3 H 0.00 0.12 7.58 -51.93 -0.39 -0.28 16 4 C -0.50 -14.04 8.63 -34.44 -0.30 -14.33 16 5 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -26.03 11.31 55.43 0.63 -25.40 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 N -0.45 -10.01 5.54 -228.79 -1.27 -11.28 16 13 C 0.02 0.39 6.96 -7.55 -0.05 0.34 16 14 C -0.14 -2.24 5.29 -89.23 -0.47 -2.71 16 15 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 16 C -0.09 -1.35 6.26 -26.09 -0.16 -1.51 16 17 C -0.11 -1.61 6.68 -26.13 -0.17 -1.78 16 18 C -0.10 -1.68 6.61 -25.98 -0.17 -1.85 16 19 C 0.02 0.43 2.98 -70.72 -0.21 0.22 16 20 H 0.07 1.42 7.78 -51.93 -0.40 1.02 16 21 H 0.01 0.16 7.14 -51.93 -0.37 -0.21 16 22 H 0.08 2.33 6.06 -51.93 -0.31 2.01 16 23 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.07 1.37 7.98 -51.93 -0.41 0.95 16 26 H 0.06 1.21 7.58 -51.93 -0.39 0.81 16 27 H 0.07 1.07 7.74 -51.93 -0.40 0.66 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 252.00 15.07 3.80 3.80 Total: -1.00 -28.97 252.00 -8.48 -37.45 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -5.20 Total: -2.79 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -1.42 Total: -18.59 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.64 Total: -36.68 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.97 -8.48 -37.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306273704.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.129 kcal (2) G-P(sol) polarization free energy of solvation -28.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds