Wall clock time and date at job start Mon Mar 30 2020 02:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 N 1.46895 * 109.47363 * 120.00320 * 2 1 3 13 13 C 1.47460 * 111.00476 * 201.52888 * 12 2 1 14 14 C 1.53594 * 88.06009 * 139.06143 * 13 12 2 15 15 H 1.09000 * 116.63151 * 215.93990 * 14 13 12 16 16 C 1.53716 * 113.24447 * 78.28928 * 14 13 12 17 17 C 1.53522 * 107.28139 * 253.36569 * 16 14 13 18 18 C 1.53633 * 107.18604 * 359.61844 * 17 16 14 19 19 C 1.47258 * 110.99731 * 297.58954 * 12 2 1 20 20 H 1.08997 * 115.49917 * 338.98817 * 19 12 2 21 21 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 22 22 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 23 23 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 25 25 H 1.08999 * 113.45457 * 253.86241 * 13 12 2 26 26 H 1.09000 * 113.45030 * 24.20379 * 13 12 2 27 27 H 1.08996 * 109.88404 * 12.78485 * 16 14 13 28 28 H 1.09004 * 109.88306 * 133.79721 * 16 14 13 29 29 H 1.09001 * 109.90289 * 119.01133 * 17 16 14 30 30 H 1.08998 * 109.90068 * 240.22807 * 17 16 14 31 31 H 1.09004 * 110.12963 * 137.08541 * 18 17 16 32 32 H 1.09000 * 110.13274 * 258.71774 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 3.1365 -2.2939 -3.6038 10 1 1.1525 -1.5961 -4.8105 11 1 3.1331 -0.1969 -4.8221 12 7 2.0197 -0.6925 1.1993 13 6 3.4032 -0.2908 1.5138 14 6 3.0028 -0.2631 2.9964 15 1 3.4607 0.5113 3.6118 16 6 2.9367 -1.6606 3.6331 17 6 1.4528 -2.0047 3.8247 18 6 0.6391 -0.8073 3.3105 19 6 1.5953 0.0078 2.4233 20 1 1.3253 1.0559 2.2945 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7011 1.1560 -3.4844 25 1 4.1417 -1.0570 1.2781 26 1 3.6712 0.6886 1.1174 27 1 3.4043 -2.3912 2.9731 28 1 3.4452 -1.6532 4.5972 29 1 1.2019 -2.8973 3.2515 30 1 1.2435 -2.1690 4.8817 31 1 -0.2114 -1.1557 2.7243 32 1 0.2940 -0.2009 4.1479 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306273704.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:12 Heat of formation + Delta-G solvation = 7.190710 kcal Electronic energy + Delta-G solvation = -12882.304480 eV Core-core repulsion = 10842.578376 eV Total energy + Delta-G solvation = -2039.726105 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.75951 -36.39243 -34.36293 -32.10537 -29.63763 -27.56866 -26.81018 -24.75968 -22.27864 -20.94680 -19.49830 -18.44921 -17.38461 -16.34476 -16.05613 -15.64882 -14.82248 -14.47052 -14.28092 -13.93429 -13.22901 -13.04887 -12.82024 -12.60203 -12.44205 -12.20511 -12.06659 -11.89721 -11.64228 -11.38136 -11.02854 -10.93469 -10.88161 -10.54302 -9.43122 -8.14844 -6.27122 1.37416 1.38863 1.51535 2.39402 3.12062 3.29980 3.42175 3.86517 4.29047 4.33745 4.43127 4.57858 4.60240 4.74320 4.76012 4.83585 4.95437 4.96595 5.03684 5.13024 5.18343 5.23844 5.31571 5.40455 5.43738 5.56915 5.68628 5.70880 6.09627 6.27734 6.63889 6.86485 7.42023 8.91058 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.056158 B = 0.010500 C = 0.009838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.475349 B = 2665.960108 C = 2845.512177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.184 3.816 3 H -0.029 1.029 4 C -0.516 4.516 5 H 0.049 0.951 6 C 0.009 3.991 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.270 1.270 10 H -0.278 1.278 11 H -0.278 1.278 12 N -0.467 5.467 13 C 0.010 3.990 14 C -0.110 4.110 15 H 0.109 0.891 16 C -0.090 4.090 17 C -0.106 4.106 18 C -0.101 4.101 19 C 0.010 3.990 20 H 0.063 0.937 21 H 0.028 0.972 22 H 0.059 0.941 23 H 0.026 0.974 24 H 0.262 0.738 25 H 0.069 0.931 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.313 -2.499 11.551 12.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.076 3.924 3 H -0.012 1.012 4 C -0.555 4.555 5 H 0.067 0.933 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.194 1.194 10 H -0.204 1.204 11 H -0.204 1.204 12 N -0.190 5.190 13 C -0.119 4.119 14 C -0.129 4.129 15 H 0.127 0.873 16 C -0.127 4.127 17 C -0.144 4.144 18 C -0.139 4.139 19 C -0.100 4.100 20 H 0.081 0.919 21 H 0.046 0.954 22 H 0.078 0.922 23 H 0.045 0.955 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.037 -3.104 11.267 11.863 hybrid contribution 0.237 0.809 -1.438 1.667 sum 2.275 -2.295 9.829 10.347 Atomic orbital electron populations 1.21571 0.97462 0.98857 0.99628 1.19564 0.92920 0.90627 0.89245 1.01166 1.21331 1.30828 1.12143 0.91175 0.93270 1.25744 0.95364 0.95837 1.01964 1.70021 1.37779 1.24238 1.24025 0.85453 0.78175 0.78587 0.79098 1.19437 1.20387 1.20384 1.68777 1.04112 1.44988 1.01163 1.23613 0.93585 0.98876 0.95837 1.23422 0.95764 0.99429 0.94271 0.87330 1.21625 0.96942 0.93892 1.00240 1.21810 0.94374 0.97356 1.00833 1.21868 0.97370 0.96950 0.97690 1.24009 0.96740 0.96417 0.92806 0.91879 0.95351 0.92216 0.95522 0.92875 0.91220 0.93721 0.92764 0.89645 0.93315 0.89837 0.93438 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.02 8.91 71.98 0.64 -5.38 16 2 C 0.18 9.84 1.70 44.17 0.08 9.91 16 3 H -0.03 -1.71 7.58 -2.38 -0.02 -1.73 16 4 C -0.52 -29.96 8.63 25.60 0.22 -29.73 16 5 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 6 C 0.01 0.53 5.30 84.66 0.45 0.98 16 7 N -0.92 -54.49 11.31 21.45 0.24 -54.25 16 8 Si 0.96 45.16 29.54 68.60 2.03 47.18 16 9 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 N -0.47 -20.87 5.54 -877.75 -4.86 -25.73 16 13 C 0.01 0.40 6.96 83.58 0.58 0.98 16 14 C -0.11 -3.35 5.29 -9.89 -0.05 -3.41 16 15 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 16 C -0.09 -2.37 6.26 31.01 0.19 -2.17 16 17 C -0.11 -2.82 6.68 30.98 0.21 -2.61 16 18 C -0.10 -3.06 6.61 31.08 0.21 -2.85 16 19 C 0.01 0.36 2.98 42.77 0.13 0.49 16 20 H 0.06 2.42 7.78 -2.39 -0.02 2.40 16 21 H 0.03 1.28 7.14 -2.39 -0.02 1.26 16 22 H 0.06 3.36 6.06 -2.39 -0.01 3.35 16 23 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 24 H 0.26 14.64 8.31 -92.70 -0.77 13.86 16 25 H 0.07 2.69 7.98 -2.39 -0.02 2.68 16 26 H 0.04 1.87 7.58 -2.39 -0.02 1.85 16 27 H 0.05 1.59 7.74 -2.39 -0.02 1.57 16 28 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -62.84 252.00 1.13 -61.72 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: 1.07 Total: 4.87 kcal Atomic # 6 Polarization: -36.45 SS G_CDS: 2.65 Total: -33.80 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -4.62 Total: -79.97 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -62.84 1.13 -61.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306273704.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.909 kcal (2) G-P(sol) polarization free energy of solvation -62.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds