Wall clock time and date at job start Mon Mar 30 2020 02:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50697 * 120.00409 * 2 1 4 4 H 1.09008 * 109.46806 * 5.00117 * 3 2 1 5 5 C 1.53002 * 109.47289 * 124.99784 * 3 2 1 6 6 N 1.46897 * 109.47252 * 245.00042 * 3 2 1 7 7 C 1.48538 * 111.00123 * 177.39547 * 6 3 2 8 8 C 1.54933 * 103.22579 * 200.28130 * 7 6 3 9 9 C 1.54593 * 102.92591 * 37.41127 * 8 7 6 10 10 H 1.08998 * 110.30989 * 96.95784 * 9 8 7 11 11 C 1.50700 * 110.31084 * 219.12964 * 9 8 7 12 12 H 1.08000 * 120.00330 * 115.71577 * 11 9 8 13 13 C 1.37886 * 119.99791 * 295.71403 * 11 9 8 14 14 N 1.31511 * 120.00026 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 119.99683 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47046 * 90.00259 * 15 13 11 17 17 H 1.48506 * 109.46937 * 210.00231 * 15 13 11 18 18 H 1.48499 * 109.47276 * 329.99845 * 15 13 11 19 19 C 1.47899 * 111.00068 * 59.99704 * 6 3 2 20 20 H 1.08004 * 120.00201 * 0.02562 * 1 2 3 21 21 H 1.07997 * 120.00654 * 180.02562 * 1 2 3 22 22 H 1.08003 * 119.99802 * 180.02562 * 2 1 3 23 23 H 1.08999 * 109.46753 * 180.02562 * 5 3 2 24 24 H 1.09002 * 109.47201 * 300.00205 * 5 3 2 25 25 H 1.08998 * 109.47076 * 60.00363 * 5 3 2 26 26 H 1.09007 * 110.66246 * 318.71191 * 7 6 3 27 27 H 1.08993 * 110.66698 * 81.83885 * 7 6 3 28 28 H 1.09007 * 110.72333 * 279.05054 * 8 7 6 29 29 H 1.09004 * 110.72411 * 155.77248 * 8 7 6 30 30 H 0.96995 * 119.99911 * 180.02562 * 14 13 11 31 31 H 1.09004 * 109.91646 * 26.49394 * 19 6 3 32 32 H 1.08998 * 109.92144 * 265.19786 * 19 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3585 2.1316 0.0896 5 6 3.0350 1.3330 1.1817 6 7 2.8152 1.4364 -1.2552 7 6 3.5223 2.7412 -1.3182 8 6 3.7898 2.9266 -2.8329 9 6 2.5100 2.3525 -3.4829 10 1 1.8119 3.1559 -3.7178 11 6 2.8578 1.5793 -4.7288 12 1 2.6716 0.5164 -4.7744 13 6 3.4138 2.2288 -5.8106 14 7 3.6410 3.5229 -5.7549 15 14 3.8455 1.2702 -7.3546 16 1 2.6797 1.2619 -8.2743 17 1 5.0029 1.9121 -8.0283 18 1 4.1974 -0.1253 -6.9887 19 6 1.9067 1.4134 -2.4220 20 1 -0.5401 0.9353 -0.0004 21 1 -0.5401 -0.9352 0.0004 22 1 1.8499 -0.9353 -0.0004 23 1 3.5797 2.2771 1.1818 24 1 2.4772 1.2355 2.1131 25 1 3.7399 0.5065 1.0921 26 1 2.8870 3.5417 -0.9389 27 1 4.4600 2.6977 -0.7643 28 1 4.6675 2.3588 -3.1420 29 1 3.9064 3.9825 -3.0776 30 1 4.0317 3.9799 -6.5161 31 1 0.9185 1.7690 -2.1303 32 1 1.8376 0.4006 -2.8189 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306835255.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:16 Heat of formation + Delta-G solvation = -1.994175 kcal Electronic energy + Delta-G solvation = -12547.472288 eV Core-core repulsion = 10507.347897 eV Total energy + Delta-G solvation = -2040.124391 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.07214 -36.39205 -34.38462 -32.01096 -29.92211 -29.64424 -26.19130 -24.05862 -21.61474 -21.32354 -20.46616 -18.55304 -17.12341 -16.47360 -16.08051 -15.48688 -15.11420 -14.58002 -13.93742 -13.69160 -13.48657 -13.04075 -12.96648 -12.84715 -12.63382 -12.37283 -12.13826 -12.07568 -11.59265 -11.44251 -11.17398 -10.83752 -10.50172 -10.30551 -9.22985 -8.12978 -6.21530 1.39301 1.41188 1.42016 1.52817 2.43857 3.17279 3.26254 3.88551 4.11256 4.16215 4.34853 4.43854 4.51262 4.58133 4.61961 4.81392 4.90540 4.97608 5.02907 5.14799 5.23513 5.32678 5.39559 5.54620 5.69168 5.74465 5.82586 5.87303 6.19860 6.33577 6.41400 6.86482 7.44955 8.96812 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.052061 B = 0.009461 C = 0.008577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.698802 B = 2958.699751 C = 3263.791038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.147 4.147 3 C 0.090 3.910 4 H 0.035 0.965 5 C -0.132 4.132 6 N -0.516 5.516 7 C 0.043 3.957 8 C -0.085 4.085 9 C 0.028 3.972 10 H -0.002 1.002 11 C -0.524 4.524 12 H 0.052 0.948 13 C 0.010 3.990 14 N -0.921 5.921 15 Si 0.955 3.045 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.269 1.269 19 C 0.065 3.935 20 H 0.092 0.908 21 H 0.116 0.884 22 H 0.114 0.886 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.039 0.961 27 H 0.087 0.913 28 H 0.038 0.962 29 H 0.040 0.960 30 H 0.260 0.740 31 H 0.026 0.974 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.733 -4.067 11.232 12.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.165 4.165 3 C -0.018 4.018 4 H 0.052 0.948 5 C -0.190 4.190 6 N -0.241 5.241 7 C -0.085 4.085 8 C -0.123 4.123 9 C 0.009 3.991 10 H 0.016 0.984 11 C -0.563 4.563 12 H 0.070 0.930 13 C -0.188 4.188 14 N -0.560 5.560 15 Si 0.781 3.219 16 H -0.201 1.201 17 H -0.209 1.209 18 H -0.193 1.193 19 C -0.063 4.063 20 H 0.111 0.889 21 H 0.134 0.866 22 H 0.132 0.868 23 H 0.076 0.924 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.105 0.895 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.294 -4.358 11.133 12.174 hybrid contribution -0.371 0.530 -1.148 1.317 sum -2.665 -3.828 9.986 11.021 Atomic orbital electron populations 1.23985 0.95605 1.02482 1.00382 1.22867 0.95924 0.97867 0.99876 1.21108 0.94752 0.95008 0.90901 0.94753 1.21738 0.98807 1.02412 0.95997 1.64817 1.25725 1.31954 1.01626 1.23225 0.98547 0.89663 0.97027 1.22174 0.98890 0.98573 0.92695 1.19509 0.93157 0.93350 0.93067 0.98400 1.21496 1.40923 0.94525 0.99325 0.92966 1.25770 0.95649 0.95794 1.01596 1.70084 1.44797 1.09420 1.31718 0.85593 0.77807 0.78956 0.79544 1.20067 1.20850 1.19325 1.22704 0.93088 0.99627 0.90873 0.88930 0.86621 0.86820 0.92407 0.90618 0.91951 0.94298 0.89502 0.94333 0.94163 0.93064 0.95604 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.56 14.32 67.79 0.97 -3.59 16 2 C -0.15 -4.06 8.14 25.65 0.21 -3.85 16 3 C 0.09 2.75 2.11 44.17 0.09 2.84 16 4 H 0.03 1.07 7.66 -2.38 -0.02 1.05 16 5 C -0.13 -3.24 9.09 71.98 0.65 -2.59 16 6 N -0.52 -19.83 5.10 -862.23 -4.40 -24.22 16 7 C 0.04 1.65 5.52 86.65 0.48 2.12 16 8 C -0.08 -4.12 5.75 31.80 0.18 -3.93 16 9 C 0.03 1.48 2.87 -10.66 -0.03 1.45 16 10 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 11 C -0.52 -29.90 8.38 25.60 0.21 -29.68 16 12 H 0.05 2.95 7.34 -2.91 -0.02 2.93 16 13 C 0.01 0.59 5.34 84.66 0.45 1.05 16 14 N -0.92 -54.57 12.62 21.45 0.27 -54.29 16 15 Si 0.96 44.65 29.54 68.60 2.03 46.68 16 16 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 C 0.06 2.85 5.50 86.45 0.48 3.32 16 20 H 0.09 2.24 7.84 -2.91 -0.02 2.22 16 21 H 0.12 2.35 8.06 -2.91 -0.02 2.32 16 22 H 0.11 3.05 8.06 -2.91 -0.02 3.02 16 23 H 0.06 1.39 7.00 -2.39 -0.02 1.37 16 24 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.04 1.41 7.96 -2.38 -0.02 1.39 16 27 H 0.09 2.96 7.67 -2.39 -0.02 2.94 16 28 H 0.04 2.01 7.86 -2.38 -0.02 1.99 16 29 H 0.04 2.05 8.12 -2.38 -0.02 2.03 16 30 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 31 H 0.03 1.07 7.71 -2.39 -0.02 1.05 16 32 H 0.06 2.68 7.39 -2.39 -0.02 2.66 16 Total: -1.00 -61.14 261.00 2.65 -58.49 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 1.05 Total: 6.22 kcal Atomic # 6 Polarization: -36.57 SS G_CDS: 3.70 Total: -32.87 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: -4.13 Total: -78.52 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -61.14 2.65 -58.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306835255.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.494 kcal (2) G-P(sol) polarization free energy of solvation -61.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds