Wall clock time and date at job start Mon Mar 30 2020 02:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 H 1.09007 * 109.46862 * 0.02562 * 3 2 1 5 5 C 1.52993 * 109.47475 * 240.00406 * 3 2 1 6 6 N 1.46900 * 109.47027 * 119.99615 * 3 2 1 7 7 C 1.47846 * 110.99794 * 55.85187 * 6 3 2 8 8 C 1.54903 * 104.79664 * 213.63608 * 7 6 3 9 9 C 1.55144 * 101.65339 * 37.06310 * 8 7 6 10 10 H 1.08999 * 110.70058 * 82.73490 * 9 8 7 11 11 C 1.50700 * 110.70791 * 205.96614 * 9 8 7 12 12 H 1.07999 * 120.00044 * 113.59664 * 11 9 8 13 13 C 1.37880 * 120.00227 * 293.60471 * 11 9 8 14 14 N 1.31519 * 119.99434 * 359.97438 * 13 11 9 15 15 Si 1.86790 * 120.00270 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47337 * 89.99532 * 15 13 11 17 17 H 1.48507 * 109.47225 * 209.99725 * 15 13 11 18 18 H 1.48503 * 109.46994 * 329.99672 * 15 13 11 19 19 C 1.47439 * 111.00570 * 295.00519 * 6 3 2 20 20 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 21 21 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 22 22 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 23 23 H 1.08999 * 109.47598 * 59.99897 * 5 3 2 24 24 H 1.08998 * 109.47403 * 180.02562 * 5 3 2 25 25 H 1.09007 * 109.47003 * 299.99825 * 5 3 2 26 26 H 1.09006 * 110.37074 * 332.46280 * 7 6 3 27 27 H 1.08995 * 110.37780 * 94.80126 * 7 6 3 28 28 H 1.09007 * 110.98854 * 278.97903 * 8 7 6 29 29 H 1.08994 * 111.03014 * 155.17668 * 8 7 6 30 30 H 0.97005 * 119.99688 * 179.97438 * 14 13 11 31 31 H 1.08991 * 109.88830 * 242.66585 * 19 6 3 32 32 H 1.09006 * 109.88635 * 3.85307 * 19 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9430 1.3862 -1.2492 6 7 2.9080 1.3829 1.1995 7 6 3.8158 0.2191 1.2846 8 6 3.9588 -0.0609 2.8014 9 6 2.5270 0.2472 3.3133 10 1 1.8723 -0.6119 3.1670 11 6 2.5561 0.6559 4.7636 12 1 2.2875 1.6630 5.0463 13 6 2.9256 -0.2560 5.7295 14 7 3.2523 -1.4825 5.3852 15 14 2.9609 0.2503 7.5272 16 1 1.6343 -0.0110 8.1412 17 1 4.0003 -0.5334 8.2419 18 1 3.2763 1.6980 7.6276 19 6 2.0859 1.4276 2.4226 20 1 -0.5401 0.9353 -0.0004 21 1 -0.5400 -0.9354 -0.0045 22 1 1.8500 -0.9353 -0.0004 23 1 2.3164 1.3286 -2.1392 24 1 3.4884 2.3300 -1.2490 25 1 3.6514 0.5577 -1.2493 26 1 3.3776 -0.6417 0.7795 27 1 4.7857 0.4617 0.8504 28 1 4.6884 0.6099 3.2552 29 1 4.2229 -1.1026 2.9837 30 1 3.5127 -2.1239 6.0648 31 1 2.2510 2.3691 2.9461 32 1 1.0318 1.3239 2.1649 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306835259.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:22 Heat of formation + Delta-G solvation = 17.192700 kcal Electronic energy + Delta-G solvation = -12674.961874 eV Core-core repulsion = 10635.669488 eV Total energy + Delta-G solvation = -2039.292386 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.72528 -34.60864 -32.37659 -30.49650 -28.29426 -28.03721 -24.22039 -22.52134 -20.80046 -19.47220 -18.54838 -16.41221 -15.69184 -14.55284 -14.38151 -14.11359 -13.77422 -12.70197 -12.34360 -12.05507 -11.94665 -11.63973 -11.51870 -10.99294 -10.70894 -10.67004 -10.50911 -10.45582 -10.16935 -9.57068 -9.23629 -9.14566 -8.80824 -8.36043 -7.50642 -5.99792 -4.01844 2.57442 3.32102 3.38706 3.42542 4.45581 4.75607 5.09030 5.33563 5.39126 5.58865 5.67944 5.86608 5.99015 6.07353 6.10297 6.30110 6.35050 6.38198 6.50139 6.66639 6.88106 6.93853 7.01466 7.20961 7.25096 7.64491 7.66467 7.88395 7.94789 8.04773 8.46080 9.00117 9.61797 11.10364 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.057800 B = 0.009485 C = 0.009172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.315335 B = 2951.357885 C = 3052.181146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.172 4.172 3 C 0.100 3.900 4 H 0.076 0.924 5 C -0.136 4.136 6 N -0.522 5.522 7 C 0.032 3.968 8 C -0.106 4.106 9 C 0.038 3.962 10 H 0.029 0.971 11 C -0.509 4.509 12 H 0.056 0.944 13 C 0.062 3.938 14 N -0.891 5.891 15 Si 0.891 3.109 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.046 3.954 20 H 0.093 0.907 21 H 0.092 0.908 22 H 0.108 0.892 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.039 0.961 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.259 0.741 31 H 0.066 0.934 32 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.738 2.697 -9.595 10.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.192 4.192 3 C -0.009 4.009 4 H 0.095 0.905 5 C -0.194 4.194 6 N -0.245 5.245 7 C -0.095 4.095 8 C -0.144 4.144 9 C 0.018 3.982 10 H 0.047 0.953 11 C -0.548 4.548 12 H 0.075 0.925 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.719 3.281 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.081 4.081 20 H 0.111 0.889 21 H 0.110 0.890 22 H 0.126 0.874 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -1.368 3.011 -9.560 10.116 hybrid contribution -0.496 -0.687 1.121 1.405 sum -1.864 2.325 -8.438 8.949 Atomic orbital electron populations 1.23741 0.95921 1.01314 1.01860 1.23680 0.96508 1.00136 0.98853 1.21050 0.94074 0.93730 0.92080 0.90542 1.21746 0.99449 1.02274 0.95899 1.63928 1.18043 1.40792 1.01779 1.23180 0.95571 0.91120 0.99642 1.22636 1.00439 1.01068 0.90304 1.19768 0.92264 0.92320 0.93802 0.95253 1.21103 1.45434 0.97324 0.90922 0.92529 1.24982 0.95214 0.94935 0.98849 1.69968 1.45906 1.03771 1.33320 0.86615 0.77646 0.78635 0.85237 1.20772 1.21291 1.19864 1.22977 0.94211 1.01274 0.89653 0.88918 0.88954 0.87364 0.92945 0.92012 0.92693 0.94295 0.92292 0.92621 0.91425 0.93123 0.91546 0.94614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.78 13.95 29.02 0.40 -2.38 16 2 C -0.17 -2.76 7.11 -36.02 -0.26 -3.01 16 3 C 0.10 1.61 2.55 -68.87 -0.18 1.43 16 4 H 0.08 1.20 7.77 -51.92 -0.40 0.80 16 5 C -0.14 -1.85 9.15 37.15 0.34 -1.51 16 6 N -0.52 -10.16 5.17 -224.69 -1.16 -11.32 16 7 C 0.03 0.64 5.29 -2.30 -0.01 0.62 16 8 C -0.11 -2.52 5.94 -24.59 -0.15 -2.67 16 9 C 0.04 0.96 2.78 -89.95 -0.25 0.71 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 11 C -0.51 -14.20 8.47 -34.44 -0.29 -14.50 16 12 H 0.06 1.56 7.53 -52.49 -0.40 1.17 16 13 C 0.06 1.73 5.36 -17.82 -0.10 1.64 16 14 N -0.89 -25.88 12.48 55.43 0.69 -25.18 16 15 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.05 1.01 6.02 -2.84 -0.02 0.99 16 20 H 0.09 1.26 7.83 -52.49 -0.41 0.84 16 21 H 0.09 1.25 8.06 -52.48 -0.42 0.82 16 22 H 0.11 1.79 6.47 -52.49 -0.34 1.45 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.75 7.32 -51.92 -0.38 0.37 16 26 H 0.04 0.74 5.57 -51.93 -0.29 0.45 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.05 1.38 8.04 -51.92 -0.42 0.96 16 29 H 0.07 1.71 7.76 -51.93 -0.40 1.31 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.07 1.50 7.63 -51.93 -0.40 1.11 16 32 H 0.04 0.75 6.76 -51.93 -0.35 0.40 16 LS Contribution 256.73 15.07 3.87 3.87 Total: -1.00 -28.44 256.73 -7.16 -35.60 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -5.04 Total: -0.81 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -0.50 Total: -18.67 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.47 Total: -36.51 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.44 -7.16 -35.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306835259.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.789 kcal (2) G-P(sol) polarization free energy of solvation -28.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds