Wall clock time and date at job start Mon Mar 30 2020 02:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 H 1.09007 * 109.46862 * 0.02562 * 3 2 1 5 5 C 1.52993 * 109.47475 * 240.00406 * 3 2 1 6 6 N 1.46900 * 109.47027 * 119.99615 * 3 2 1 7 7 C 1.47846 * 110.99794 * 55.85187 * 6 3 2 8 8 C 1.54903 * 104.79664 * 213.63608 * 7 6 3 9 9 C 1.55144 * 101.65339 * 37.06310 * 8 7 6 10 10 H 1.08999 * 110.70058 * 82.73490 * 9 8 7 11 11 C 1.50700 * 110.70791 * 205.96614 * 9 8 7 12 12 H 1.07999 * 120.00044 * 113.59664 * 11 9 8 13 13 C 1.37880 * 120.00227 * 293.60471 * 11 9 8 14 14 N 1.31519 * 119.99434 * 359.97438 * 13 11 9 15 15 Si 1.86790 * 120.00270 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47337 * 89.99532 * 15 13 11 17 17 H 1.48507 * 109.47225 * 209.99725 * 15 13 11 18 18 H 1.48503 * 109.46994 * 329.99672 * 15 13 11 19 19 C 1.47439 * 111.00570 * 295.00519 * 6 3 2 20 20 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 21 21 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 22 22 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 23 23 H 1.08999 * 109.47598 * 59.99897 * 5 3 2 24 24 H 1.08998 * 109.47403 * 180.02562 * 5 3 2 25 25 H 1.09007 * 109.47003 * 299.99825 * 5 3 2 26 26 H 1.09006 * 110.37074 * 332.46280 * 7 6 3 27 27 H 1.08995 * 110.37780 * 94.80126 * 7 6 3 28 28 H 1.09007 * 110.98854 * 278.97903 * 8 7 6 29 29 H 1.08994 * 111.03014 * 155.17668 * 8 7 6 30 30 H 0.97005 * 119.99688 * 179.97438 * 14 13 11 31 31 H 1.08991 * 109.88830 * 242.66585 * 19 6 3 32 32 H 1.09006 * 109.88635 * 3.85307 * 19 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9430 1.3862 -1.2492 6 7 2.9080 1.3829 1.1995 7 6 3.8158 0.2191 1.2846 8 6 3.9588 -0.0609 2.8014 9 6 2.5270 0.2472 3.3133 10 1 1.8723 -0.6119 3.1670 11 6 2.5561 0.6559 4.7636 12 1 2.2875 1.6630 5.0463 13 6 2.9256 -0.2560 5.7295 14 7 3.2523 -1.4825 5.3852 15 14 2.9609 0.2503 7.5272 16 1 1.6343 -0.0110 8.1412 17 1 4.0003 -0.5334 8.2419 18 1 3.2763 1.6980 7.6276 19 6 2.0859 1.4276 2.4226 20 1 -0.5401 0.9353 -0.0004 21 1 -0.5400 -0.9354 -0.0045 22 1 1.8500 -0.9353 -0.0004 23 1 2.3164 1.3286 -2.1392 24 1 3.4884 2.3300 -1.2490 25 1 3.6514 0.5577 -1.2493 26 1 3.3776 -0.6417 0.7795 27 1 4.7857 0.4617 0.8504 28 1 4.6884 0.6099 3.2552 29 1 4.2229 -1.1026 2.9837 30 1 3.5127 -2.1239 6.0648 31 1 2.2510 2.3691 2.9461 32 1 1.0318 1.3239 2.1649 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306835259.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:22 Heat of formation + Delta-G solvation = -0.432657 kcal Electronic energy + Delta-G solvation = -12675.726167 eV Core-core repulsion = 10635.669488 eV Total energy + Delta-G solvation = -2040.056679 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.29808 -36.24182 -34.27136 -31.93761 -29.99741 -29.67823 -26.20880 -23.87472 -22.31749 -21.36948 -19.95527 -18.51687 -17.19677 -16.51760 -15.99414 -15.46407 -15.20230 -14.46476 -13.93142 -13.69341 -13.50036 -13.06115 -12.96931 -12.92236 -12.61286 -12.35236 -12.06064 -11.91905 -11.76243 -11.49626 -11.14292 -10.88923 -10.49162 -10.36483 -9.07494 -8.14564 -6.23969 1.37044 1.40583 1.41299 1.52019 2.42526 3.16722 3.25385 3.88024 4.12313 4.18986 4.30210 4.47099 4.57266 4.62065 4.64633 4.86131 4.91079 5.00544 5.03835 5.16346 5.30393 5.32953 5.41188 5.57848 5.66011 5.72968 5.80879 5.89195 6.20323 6.34402 6.40230 6.85033 7.43305 8.95029 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.057800 B = 0.009485 C = 0.009172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.315335 B = 2951.357885 C = 3052.181146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.193 4.193 3 C 0.097 3.903 4 H 0.084 0.916 5 C -0.130 4.130 6 N -0.524 5.524 7 C 0.046 3.954 8 C -0.100 4.100 9 C 0.032 3.968 10 H -0.003 1.003 11 C -0.530 4.530 12 H 0.054 0.946 13 C 0.012 3.988 14 N -0.920 5.920 15 Si 0.956 3.044 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.267 1.267 19 C 0.059 3.941 20 H 0.106 0.894 21 H 0.102 0.898 22 H 0.099 0.901 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.039 0.961 29 H 0.043 0.957 30 H 0.260 0.740 31 H 0.057 0.943 32 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.087 3.559 -10.314 11.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.212 4.212 3 C -0.011 4.011 4 H 0.102 0.898 5 C -0.187 4.187 6 N -0.247 5.247 7 C -0.082 4.082 8 C -0.139 4.139 9 C 0.013 3.987 10 H 0.015 0.985 11 C -0.569 4.569 12 H 0.072 0.928 13 C -0.187 4.187 14 N -0.559 5.559 15 Si 0.781 3.219 16 H -0.201 1.201 17 H -0.209 1.209 18 H -0.192 1.192 19 C -0.068 4.068 20 H 0.124 0.876 21 H 0.120 0.880 22 H 0.117 0.883 23 H 0.093 0.907 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.097 0.903 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.723 3.882 -10.295 11.137 hybrid contribution -0.442 -0.977 1.311 1.693 sum -2.165 2.905 -8.985 9.688 Atomic orbital electron populations 1.23972 0.95607 1.02493 0.99662 1.23634 0.97073 0.99655 1.00886 1.21197 0.94359 0.94102 0.91477 0.89753 1.21710 0.99334 1.02383 0.95304 1.63924 1.18330 1.40460 1.02016 1.23052 0.96845 0.91787 0.96469 1.22434 0.98948 0.99102 0.93443 1.19707 0.92674 0.92551 0.93799 0.98478 1.21464 1.45510 0.97359 0.92546 0.92760 1.25777 0.94821 0.94913 1.03174 1.70090 1.46537 1.04695 1.34626 0.85587 0.77827 0.78483 0.79972 1.20083 1.20880 1.19178 1.22706 0.94914 0.99026 0.90165 0.87559 0.87997 0.88324 0.90731 0.91604 0.92908 0.93457 0.90251 0.94234 0.93787 0.93070 0.92455 0.93911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.86 13.95 67.79 0.95 -3.92 16 2 C -0.19 -5.85 7.11 25.65 0.18 -5.66 16 3 C 0.10 2.91 2.55 44.17 0.11 3.03 16 4 H 0.08 2.42 7.77 -2.38 -0.02 2.40 16 5 C -0.13 -3.14 9.15 71.98 0.66 -2.48 16 6 N -0.52 -19.65 5.17 -864.78 -4.47 -24.12 16 7 C 0.05 1.76 5.29 86.77 0.46 2.22 16 8 C -0.10 -4.87 5.94 31.98 0.19 -4.68 16 9 C 0.03 1.66 2.78 -10.36 -0.03 1.63 16 10 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 11 C -0.53 -30.00 8.47 25.60 0.22 -29.78 16 12 H 0.05 3.01 7.53 -2.91 -0.02 2.99 16 13 C 0.01 0.67 5.36 84.65 0.45 1.13 16 14 N -0.92 -54.39 12.48 21.45 0.27 -54.12 16 15 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 19 C 0.06 2.58 6.02 86.64 0.52 3.10 16 20 H 0.11 2.58 7.83 -2.91 -0.02 2.56 16 21 H 0.10 2.54 8.06 -2.91 -0.02 2.52 16 22 H 0.10 3.17 6.47 -2.91 -0.02 3.15 16 23 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.05 1.30 7.32 -2.38 -0.02 1.28 16 26 H 0.05 1.75 5.57 -2.38 -0.01 1.74 16 27 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.04 1.99 8.04 -2.38 -0.02 1.97 16 29 H 0.04 2.29 7.76 -2.39 -0.02 2.27 16 30 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 31 H 0.06 2.58 7.63 -2.39 -0.02 2.56 16 32 H 0.04 1.76 6.76 -2.38 -0.02 1.75 16 Total: -1.00 -60.51 256.73 2.60 -57.91 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 1.06 Total: 9.38 kcal Atomic # 6 Polarization: -39.12 SS G_CDS: 3.71 Total: -35.41 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -4.20 Total: -78.24 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -60.51 2.60 -57.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306835259.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.478 kcal (2) G-P(sol) polarization free energy of solvation -60.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds