Wall clock time and date at job start Mon Mar 30 2020 02:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47401 * 2 1 4 4 C 1.50705 * 109.46705 * 240.00117 * 2 1 3 5 5 H 1.07994 * 120.00210 * 274.98380 * 4 2 1 6 6 C 1.37879 * 119.99970 * 94.98905 * 4 2 1 7 7 N 1.31514 * 119.99995 * 184.89651 * 6 4 2 8 8 Si 1.86798 * 120.00000 * 4.89745 * 6 4 2 9 9 H 1.48502 * 109.47424 * 84.80420 * 8 6 4 10 10 H 1.48499 * 109.47380 * 204.80446 * 8 6 4 11 11 H 1.48503 * 109.47230 * 324.80706 * 8 6 4 12 12 N 1.46898 * 109.47410 * 120.00202 * 2 1 3 13 13 C 1.47480 * 110.99915 * 294.99992 * 12 2 1 14 14 C 1.53518 * 87.93176 * 221.29521 * 13 12 2 15 15 C 1.52995 * 114.16826 * 139.66957 * 14 13 12 16 16 C 1.53000 * 117.49630 * 128.75013 * 15 14 13 17 17 C 1.52998 * 117.49936 * 60.08912 * 15 14 13 18 18 C 1.47479 * 111.00325 * 199.02790 * 12 2 1 19 19 H 1.08999 * 109.46789 * 295.13853 * 1 2 3 20 20 H 1.09000 * 109.47414 * 55.14151 * 1 2 3 21 21 H 1.08996 * 109.47431 * 175.14107 * 1 2 3 22 22 H 0.97001 * 119.99602 * 179.97438 * 7 6 4 23 23 H 1.08999 * 113.47628 * 336.05970 * 13 12 2 24 24 H 1.08999 * 113.47873 * 106.52866 * 13 12 2 25 25 H 1.08992 * 114.16906 * 272.37781 * 14 13 12 26 26 H 1.09005 * 115.54896 * 274.41451 * 15 14 13 27 27 H 1.08994 * 117.50050 * 359.97438 * 16 15 14 28 28 H 1.09004 * 117.49865 * 145.02387 * 16 15 14 29 29 H 1.09005 * 117.49759 * 214.97211 * 17 15 14 30 30 H 1.08997 * 117.50297 * 359.97438 * 17 15 14 31 31 H 1.08998 * 113.47477 * 253.47509 * 18 12 2 32 32 H 1.09006 * 113.47332 * 23.92952 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.1356 -1.7854 -1.2291 6 6 2.3599 0.0121 -2.3582 7 7 2.7058 -0.6132 -3.4623 8 14 2.3124 1.8790 -2.3178 9 1 3.5975 2.3954 -1.7820 10 1 2.1052 2.3989 -3.6933 11 1 1.1969 2.3271 -1.4460 12 7 2.0197 -0.6925 1.1994 13 6 1.6473 0.0420 2.4228 14 6 3.0497 -0.2645 2.9669 15 6 3.6975 0.8991 3.7201 16 6 4.2590 0.6128 5.1143 17 6 2.9733 1.4289 4.9593 18 6 3.4230 -0.3360 1.4796 19 1 -0.3633 0.4366 0.9303 20 1 -0.3634 0.5873 -0.8432 21 1 -0.3634 -1.0239 -0.0870 22 1 2.9360 -0.1048 -4.2557 23 1 1.4695 1.1041 2.2545 24 1 0.8479 -0.4353 2.9895 25 1 3.1263 -1.2162 3.4925 26 1 4.2304 1.6211 3.1014 27 1 4.1666 -0.4043 5.4950 28 1 5.1611 1.1469 5.4130 29 1 3.0301 2.4996 5.1561 30 1 2.0351 0.9489 5.2378 31 1 4.1285 -1.1336 1.2468 32 1 3.7191 0.6253 1.0594 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306961776.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:05 Heat of formation + Delta-G solvation = 55.396985 kcal Electronic energy + Delta-G solvation = -12513.733725 eV Core-core repulsion = 10476.098001 eV Total energy + Delta-G solvation = -2037.635724 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.72383 -36.51470 -33.27765 -31.11030 -26.65984 -25.93210 -24.40435 -22.27898 -21.81689 -19.33671 -19.11128 -16.92100 -15.69966 -15.07390 -14.83580 -14.10565 -13.34561 -13.07867 -12.72483 -12.40737 -11.98203 -11.57736 -11.48647 -11.19806 -10.94695 -10.77035 -10.65624 -10.48392 -10.00236 -9.90217 -9.55694 -9.44734 -9.09882 -8.56129 -7.83160 -6.07784 -4.06145 3.23870 3.33186 3.33957 3.84968 4.38936 4.66606 4.83993 4.97106 5.07723 5.27648 5.31507 5.60403 5.66325 5.69111 5.90573 6.02193 6.07520 6.15710 6.21251 6.30560 6.32805 6.39010 6.58589 6.60223 6.76143 6.83670 7.04793 7.50046 7.79857 7.98308 8.64944 9.03926 9.55623 11.05708 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.047722 B = 0.009922 C = 0.009609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.593048 B = 2821.314244 C = 2913.134089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.147 3.853 3 H 0.008 0.992 4 C -0.498 4.498 5 H 0.080 0.920 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.871 3.129 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.267 1.267 12 N -0.459 5.459 13 C 0.001 3.999 14 C -0.095 4.095 15 C -0.138 4.138 16 C -0.181 4.181 17 C -0.180 4.180 18 C 0.026 3.974 19 H 0.022 0.978 20 H 0.045 0.955 21 H 0.054 0.946 22 H 0.264 0.736 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.096 0.904 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.814 4.677 13.790 14.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.039 3.961 3 H 0.026 0.974 4 C -0.537 4.537 5 H 0.098 0.902 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.698 3.302 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.192 1.192 12 N -0.182 5.182 13 C -0.128 4.128 14 C -0.113 4.113 15 C -0.157 4.157 16 C -0.218 4.218 17 C -0.217 4.217 18 C -0.103 4.103 19 H 0.041 0.959 20 H 0.064 0.936 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.089 0.911 25 H 0.114 0.886 26 H 0.120 0.880 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.637 4.005 13.435 14.034 hybrid contribution 0.213 1.985 -0.204 2.007 sum 0.849 5.990 13.231 14.549 Atomic orbital electron populations 1.21917 0.97903 1.01073 0.98236 1.20276 0.92670 0.92522 0.90602 0.97420 1.20871 1.42893 0.95921 0.93993 0.90211 1.25011 0.94767 0.97893 0.95429 1.69893 1.46533 1.35586 1.01633 0.86966 0.78923 0.87014 0.77279 1.20278 1.21319 1.19172 1.68995 1.03808 1.44059 1.01320 1.23729 0.96328 0.97790 0.94957 1.22429 0.96490 0.96782 0.95649 1.22318 1.03039 1.00462 0.89868 1.22980 0.97211 1.01166 1.00484 1.22899 0.96442 0.99502 1.02841 1.23543 0.94232 1.00398 0.92175 0.95881 0.93577 0.92734 0.92643 0.92420 0.91146 0.88614 0.87969 0.88890 0.89276 0.89271 0.88813 0.90444 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.24 37.16 0.34 -2.62 16 2 C 0.15 3.57 1.33 -68.86 -0.09 3.48 16 3 H 0.01 0.20 4.71 -51.93 -0.24 -0.04 16 4 C -0.50 -14.28 8.91 -34.44 -0.31 -14.59 16 5 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 6 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 7 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 8 Si 0.87 21.66 26.99 -169.99 -4.59 17.07 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.27 -6.39 6.82 56.52 0.39 -6.00 16 12 N -0.46 -9.93 6.12 -237.99 -1.46 -11.39 16 13 C 0.00 0.02 5.90 -7.55 -0.04 -0.02 16 14 C -0.09 -1.48 4.20 -90.09 -0.38 -1.86 16 15 C -0.14 -1.84 5.59 -90.62 -0.51 -2.35 16 16 C -0.18 -2.01 10.23 -26.69 -0.27 -2.29 16 17 C -0.18 -2.05 10.08 -26.69 -0.27 -2.32 16 18 C 0.03 0.50 7.02 -7.55 -0.05 0.45 16 19 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 20 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 21 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 22 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 23 H 0.06 1.02 7.81 -51.93 -0.41 0.61 16 24 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.10 1.43 8.10 -51.93 -0.42 1.01 16 26 H 0.10 1.39 7.99 -51.93 -0.42 0.98 16 27 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.06 1.20 7.48 -51.93 -0.39 0.81 16 LS Contribution 260.84 15.07 3.93 3.93 Total: -1.00 -30.04 260.84 -8.22 -38.26 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -5.20 Total: -0.85 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -1.68 Total: -20.15 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: -0.68 Total: -38.26 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.59 Total: 17.07 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.04 -8.22 -38.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306961776.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.661 kcal (2) G-P(sol) polarization free energy of solvation -30.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds