Wall clock time and date at job start Mon Mar 30 2020 02:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47401 * 2 1 4 4 C 1.50705 * 109.46705 * 240.00117 * 2 1 3 5 5 H 1.07994 * 120.00210 * 274.98380 * 4 2 1 6 6 C 1.37879 * 119.99970 * 94.98905 * 4 2 1 7 7 N 1.31514 * 119.99995 * 184.89651 * 6 4 2 8 8 Si 1.86798 * 120.00000 * 4.89745 * 6 4 2 9 9 H 1.48502 * 109.47424 * 84.80420 * 8 6 4 10 10 H 1.48499 * 109.47380 * 204.80446 * 8 6 4 11 11 H 1.48503 * 109.47230 * 324.80706 * 8 6 4 12 12 N 1.46898 * 109.47410 * 120.00202 * 2 1 3 13 13 C 1.47480 * 110.99915 * 294.99992 * 12 2 1 14 14 C 1.53518 * 87.93176 * 221.29521 * 13 12 2 15 15 C 1.52995 * 114.16826 * 139.66957 * 14 13 12 16 16 C 1.53000 * 117.49630 * 128.75013 * 15 14 13 17 17 C 1.52998 * 117.49936 * 60.08912 * 15 14 13 18 18 C 1.47479 * 111.00325 * 199.02790 * 12 2 1 19 19 H 1.08999 * 109.46789 * 295.13853 * 1 2 3 20 20 H 1.09000 * 109.47414 * 55.14151 * 1 2 3 21 21 H 1.08996 * 109.47431 * 175.14107 * 1 2 3 22 22 H 0.97001 * 119.99602 * 179.97438 * 7 6 4 23 23 H 1.08999 * 113.47628 * 336.05970 * 13 12 2 24 24 H 1.08999 * 113.47873 * 106.52866 * 13 12 2 25 25 H 1.08992 * 114.16906 * 272.37781 * 14 13 12 26 26 H 1.09005 * 115.54896 * 274.41451 * 15 14 13 27 27 H 1.08994 * 117.50050 * 359.97438 * 16 15 14 28 28 H 1.09004 * 117.49865 * 145.02387 * 16 15 14 29 29 H 1.09005 * 117.49759 * 214.97211 * 17 15 14 30 30 H 1.08997 * 117.50297 * 359.97438 * 17 15 14 31 31 H 1.08998 * 113.47477 * 253.47509 * 18 12 2 32 32 H 1.09006 * 113.47332 * 23.92952 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.1356 -1.7854 -1.2291 6 6 2.3599 0.0121 -2.3582 7 7 2.7058 -0.6132 -3.4623 8 14 2.3124 1.8790 -2.3178 9 1 3.5975 2.3954 -1.7820 10 1 2.1052 2.3989 -3.6933 11 1 1.1969 2.3271 -1.4460 12 7 2.0197 -0.6925 1.1994 13 6 1.6473 0.0420 2.4228 14 6 3.0497 -0.2645 2.9669 15 6 3.6975 0.8991 3.7201 16 6 4.2590 0.6128 5.1143 17 6 2.9733 1.4289 4.9593 18 6 3.4230 -0.3360 1.4796 19 1 -0.3633 0.4366 0.9303 20 1 -0.3634 0.5873 -0.8432 21 1 -0.3634 -1.0239 -0.0870 22 1 2.9360 -0.1048 -4.2557 23 1 1.4695 1.1041 2.2545 24 1 0.8479 -0.4353 2.9895 25 1 3.1263 -1.2162 3.4925 26 1 4.2304 1.6211 3.1014 27 1 4.1666 -0.4043 5.4950 28 1 5.1611 1.1469 5.4130 29 1 3.0301 2.4996 5.1561 30 1 2.0351 0.9489 5.2378 31 1 4.1285 -1.1336 1.2468 32 1 3.7191 0.6253 1.0594 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306961776.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:05 Heat of formation + Delta-G solvation = 34.902210 kcal Electronic energy + Delta-G solvation = -12514.622445 eV Core-core repulsion = 10476.098001 eV Total energy + Delta-G solvation = -2038.524444 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.18800 -37.63035 -35.25527 -33.08200 -28.15159 -27.76667 -26.15870 -23.25270 -23.09330 -20.98709 -20.49995 -19.04511 -17.15634 -16.52553 -16.20787 -15.78371 -14.85258 -14.69592 -14.49511 -14.23769 -13.50273 -13.16539 -12.87554 -12.63479 -12.57941 -12.26810 -12.08181 -11.82123 -11.72625 -11.69991 -11.11946 -10.92004 -10.74062 -10.58108 -9.50774 -8.32271 -6.36086 1.27950 1.29386 1.40271 2.28947 2.89043 2.99563 3.36466 3.59088 3.86257 4.10928 4.25337 4.34006 4.42303 4.48463 4.61200 4.64920 4.73425 4.80082 4.85219 4.86024 4.95325 5.06588 5.10695 5.26027 5.29115 5.34659 5.45715 5.66358 5.83183 6.07520 6.62510 6.71021 7.29943 8.85296 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.047722 B = 0.009922 C = 0.009609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.593048 B = 2821.314244 C = 2913.134089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.150 3.850 3 H 0.009 0.991 4 C -0.504 4.504 5 H 0.028 0.972 6 C 0.012 3.988 7 N -0.948 5.948 8 Si 0.938 3.062 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.246 1.246 12 N -0.487 5.487 13 C 0.005 3.995 14 C -0.067 4.067 15 C -0.161 4.161 16 C -0.169 4.169 17 C -0.169 4.169 18 C 0.014 3.986 19 H 0.056 0.944 20 H 0.041 0.959 21 H 0.043 0.957 22 H 0.266 0.734 23 H 0.062 0.938 24 H 0.087 0.913 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.407 6.685 16.239 17.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.042 3.958 3 H 0.026 0.974 4 C -0.543 4.543 5 H 0.046 0.954 6 C -0.185 4.185 7 N -0.588 5.588 8 Si 0.762 3.238 9 H -0.192 1.192 10 H -0.209 1.209 11 H -0.170 1.170 12 N -0.209 5.209 13 C -0.124 4.124 14 C -0.085 4.085 15 C -0.180 4.180 16 C -0.206 4.206 17 C -0.206 4.206 18 C -0.115 4.115 19 H 0.075 0.925 20 H 0.061 0.939 21 H 0.062 0.938 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.105 0.895 25 H 0.122 0.878 26 H 0.115 0.885 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.081 0.919 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.222 6.006 15.913 17.010 hybrid contribution 0.365 1.232 -0.936 1.590 sum 0.587 7.239 14.976 16.644 Atomic orbital electron populations 1.21819 0.96270 1.00748 0.99854 1.20148 0.93841 0.91923 0.89929 0.97358 1.21058 1.42922 0.93869 0.96425 0.95368 1.25892 0.94358 1.03505 0.94743 1.70053 1.48251 1.37894 1.02601 0.85872 0.79943 0.80143 0.77837 1.19198 1.20857 1.17011 1.68890 1.05239 1.44973 1.01844 1.23790 0.98047 0.97672 0.92857 1.22233 0.94750 0.98264 0.93282 1.22180 1.04954 1.00056 0.90782 1.23083 0.97789 1.01797 0.97911 1.22996 0.96772 1.00452 1.00371 1.23618 0.93031 0.99306 0.95532 0.92491 0.93950 0.93781 0.92454 0.91952 0.89468 0.87761 0.88521 0.88216 0.87912 0.87982 0.88298 0.91942 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.54 9.24 71.98 0.66 -4.87 16 2 C 0.15 7.20 1.33 44.17 0.06 7.26 16 3 H 0.01 0.42 4.71 -2.39 -0.01 0.41 16 4 C -0.50 -29.81 8.91 25.60 0.23 -29.58 16 5 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 6 C 0.01 0.73 5.47 84.66 0.46 1.20 16 7 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 8 Si 0.94 44.53 26.99 68.60 1.85 46.39 16 9 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 11 H -0.25 -10.81 6.82 99.48 0.68 -10.13 16 12 N -0.49 -20.79 6.12 -906.87 -5.55 -26.34 16 13 C 0.01 0.17 5.90 83.58 0.49 0.66 16 14 C -0.07 -1.94 4.20 -10.45 -0.04 -1.98 16 15 C -0.16 -3.83 5.59 -10.80 -0.06 -3.89 16 16 C -0.17 -3.14 10.23 30.62 0.31 -2.82 16 17 C -0.17 -3.19 10.08 30.62 0.31 -2.89 16 18 C 0.01 0.56 7.02 83.57 0.59 1.15 16 19 H 0.06 2.04 7.20 -2.39 -0.02 2.02 16 20 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 21 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 22 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 23 H 0.06 1.99 7.81 -2.39 -0.02 1.97 16 24 H 0.09 2.53 8.14 -2.39 -0.02 2.52 16 25 H 0.10 2.86 8.10 -2.39 -0.02 2.84 16 26 H 0.10 2.43 7.99 -2.38 -0.02 2.41 16 27 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.05 2.03 7.48 -2.38 -0.02 2.02 16 Total: -1.00 -66.28 260.84 0.65 -65.63 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 1.04 Total: 10.05 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 3.01 Total: -35.77 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -5.25 Total: -86.29 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.85 Total: 46.39 kcal Total: -66.28 0.65 -65.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306961776.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.535 kcal (2) G-P(sol) polarization free energy of solvation -66.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds