Wall clock time and date at job start Mon Mar 30 2020 02:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46749 * 2 1 4 4 C 1.50697 * 109.46902 * 119.99795 * 2 1 3 5 5 H 1.07999 * 120.00252 * 120.00265 * 4 2 1 6 6 C 1.37885 * 119.99925 * 300.00111 * 4 2 1 7 7 N 1.31514 * 119.99710 * 180.02562 * 6 4 2 8 8 Si 1.86792 * 120.00069 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.47129 * 90.00086 * 8 6 4 10 10 H 1.48496 * 109.47326 * 210.00047 * 8 6 4 11 11 H 1.48500 * 109.47049 * 330.00137 * 8 6 4 12 12 N 1.46902 * 109.47195 * 239.99620 * 2 1 3 13 13 C 1.47961 * 111.00005 * 60.00056 * 12 2 1 14 14 C 1.53934 * 86.17939 * 137.58072 * 13 12 2 15 15 C 1.52996 * 113.73324 * 221.81496 * 14 13 12 16 16 C 1.53001 * 117.50322 * 246.72450 * 15 14 13 17 17 C 1.53002 * 60.00075 * 252.50968 * 16 15 14 18 18 C 1.48296 * 111.00409 * 159.35357 * 12 2 1 19 19 H 1.08999 * 109.46749 * 180.02562 * 1 2 3 20 20 H 1.08994 * 109.47059 * 300.00252 * 1 2 3 21 21 H 1.09001 * 109.46924 * 60.00426 * 1 2 3 22 22 H 0.97005 * 119.99785 * 180.02562 * 7 6 4 23 23 H 1.09007 * 113.75652 * 23.26342 * 13 12 2 24 24 H 1.08993 * 113.76177 * 251.90248 * 13 12 2 25 25 H 1.09002 * 113.73279 * 90.64057 * 14 13 12 26 26 H 1.09001 * 115.55377 * 32.43311 * 15 14 13 27 27 H 1.09007 * 117.49195 * 359.97438 * 16 15 14 28 28 H 1.08992 * 117.50230 * 145.02159 * 16 15 14 29 29 H 1.08991 * 117.50010 * 252.50473 * 17 16 15 30 30 H 1.09007 * 117.49947 * 107.48291 * 17 16 15 31 31 H 1.09001 * 113.86054 * 108.14174 * 18 12 2 32 32 H 1.09000 * 113.76062 * 336.68481 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1379 -0.8589 3.5566 8 14 0.6259 1.2799 2.6541 9 1 -0.8021 0.8746 2.6992 10 1 0.9771 1.9955 3.9069 11 1 0.8492 2.1773 1.4922 12 7 2.0197 -0.6926 -1.1994 13 6 1.5453 -0.0217 -2.4299 14 6 2.9686 -0.2400 -2.9743 15 6 3.5274 0.9628 -3.7370 16 6 3.7660 0.7981 -5.2392 17 6 4.9547 0.8557 -4.2776 18 6 3.4183 -0.3045 -1.5035 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.9032 -0.5277 4.4376 23 1 1.2862 1.0273 -2.2861 24 1 0.7791 -0.5805 -2.9672 25 1 3.0930 -1.1795 -3.5127 26 1 3.1950 1.9391 -3.3840 27 1 3.5253 -0.1675 -5.6841 28 1 3.5905 1.6659 -5.8749 29 1 5.5611 1.7613 -4.2806 30 1 5.4956 -0.0719 -4.0899 31 1 4.1475 -1.0890 -1.3012 32 1 3.7059 0.6619 -1.0894 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306961778.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:08 Heat of formation + Delta-G solvation = 61.135874 kcal Electronic energy + Delta-G solvation = -12472.999925 eV Core-core repulsion = 10435.613059 eV Total energy + Delta-G solvation = -2037.386867 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.55769 -36.52411 -33.39854 -31.05126 -26.80043 -25.90196 -24.39738 -22.24601 -21.93289 -19.42104 -19.14669 -16.70076 -15.80280 -15.16189 -14.68516 -14.29430 -13.47176 -13.07893 -12.80908 -12.28438 -12.09351 -11.93197 -11.52001 -11.10018 -10.99595 -10.88018 -10.56859 -10.27778 -10.11837 -9.83120 -9.54910 -9.28954 -9.11100 -8.54280 -7.78520 -6.04919 -4.02795 3.26479 3.35460 3.38282 3.83896 4.40625 4.65751 4.78249 4.90265 5.06065 5.26068 5.41062 5.51802 5.62837 5.66029 5.89388 5.96759 6.04653 6.15108 6.19373 6.25306 6.30456 6.36041 6.45946 6.55849 6.71942 6.79572 7.01188 7.44820 7.80348 7.96373 8.66092 9.04145 9.57307 11.08519 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.058215 B = 0.009084 C = 0.008762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.861822 B = 3081.714559 C = 3194.941024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.150 3.850 3 H 0.004 0.996 4 C -0.500 4.500 5 H 0.080 0.920 6 C 0.068 3.932 7 N -0.900 5.900 8 Si 0.887 3.113 9 H -0.279 1.279 10 H -0.297 1.297 11 H -0.270 1.270 12 N -0.463 5.463 13 C 0.004 3.996 14 C -0.091 4.091 15 C -0.140 4.140 16 C -0.182 4.182 17 C -0.179 4.179 18 C 0.027 3.973 19 H 0.059 0.941 20 H 0.041 0.959 21 H 0.028 0.972 22 H 0.263 0.737 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.406 4.615 -13.915 14.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.042 3.958 3 H 0.021 0.979 4 C -0.538 4.538 5 H 0.098 0.902 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.717 3.283 9 H -0.206 1.206 10 H -0.224 1.224 11 H -0.196 1.196 12 N -0.186 5.186 13 C -0.125 4.125 14 C -0.110 4.110 15 C -0.159 4.159 16 C -0.219 4.219 17 C -0.216 4.216 18 C -0.102 4.102 19 H 0.079 0.921 20 H 0.060 0.940 21 H 0.047 0.953 22 H 0.073 0.927 23 H 0.077 0.923 24 H 0.095 0.905 25 H 0.110 0.890 26 H 0.119 0.881 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.227 3.925 -13.552 14.162 hybrid contribution -0.526 1.743 0.288 1.843 sum 0.702 5.668 -13.264 14.441 Atomic orbital electron populations 1.22166 0.98599 1.01328 0.98317 1.20219 0.91747 0.93022 0.90838 0.97860 1.20897 1.31638 1.13482 0.87804 0.90203 1.24945 0.95909 0.96636 0.95831 1.69888 1.45828 1.40349 0.97835 0.86873 0.80778 0.83840 0.76770 1.20568 1.22429 1.19554 1.68597 1.02942 1.46121 1.00922 1.23833 0.96123 0.98163 0.94379 1.22666 0.96302 0.96403 0.95613 1.22358 0.98783 0.99708 0.95028 1.22940 1.03537 1.02746 0.92725 1.22882 0.91162 1.03092 1.04455 1.23721 0.93880 1.00250 0.92321 0.92142 0.94010 0.95306 0.92667 0.92275 0.90521 0.89019 0.88125 0.88936 0.89300 0.89167 0.88746 0.90270 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.57 37.16 0.32 -3.01 16 2 C 0.15 3.67 1.30 -68.86 -0.09 3.58 16 3 H 0.00 0.10 6.68 -51.93 -0.35 -0.25 16 4 C -0.50 -14.49 9.19 -34.44 -0.32 -14.80 16 5 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 6 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 7 N -0.90 -28.01 13.96 55.43 0.77 -27.23 16 8 Si 0.89 22.37 24.37 -169.99 -4.14 18.23 16 9 H -0.28 -6.85 6.87 56.52 0.39 -6.46 16 10 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 11 H -0.27 -6.55 6.53 56.52 0.37 -6.18 16 12 N -0.46 -9.94 5.98 -231.37 -1.38 -11.32 16 13 C 0.00 0.07 6.29 -2.76 -0.02 0.06 16 14 C -0.09 -1.39 3.98 -89.69 -0.36 -1.75 16 15 C -0.14 -1.82 5.43 -90.62 -0.49 -2.31 16 16 C -0.18 -1.98 10.24 -26.73 -0.27 -2.25 16 17 C -0.18 -2.03 10.25 -26.73 -0.27 -2.30 16 18 C 0.03 0.51 7.35 -2.57 -0.02 0.50 16 19 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 20 H 0.04 0.98 3.27 -51.93 -0.17 0.81 16 21 H 0.03 0.56 7.02 -51.93 -0.36 0.19 16 22 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 23 H 0.06 1.01 7.60 -51.92 -0.39 0.61 16 24 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 25 H 0.09 1.34 8.12 -51.93 -0.42 0.92 16 26 H 0.10 1.33 8.13 -51.93 -0.42 0.91 16 27 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 32 H 0.06 1.26 7.58 -51.93 -0.39 0.86 16 LS Contribution 254.63 15.07 3.84 3.84 Total: -1.00 -30.51 254.63 -7.61 -38.13 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -5.08 Total: -1.25 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -1.62 Total: -20.38 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: -0.61 Total: -38.55 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.14 Total: 18.23 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.51 -7.61 -38.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306961778.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.261 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds