Wall clock time and date at job start Mon Mar 30 2020 02:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46749 * 2 1 4 4 C 1.50697 * 109.46902 * 119.99795 * 2 1 3 5 5 H 1.07999 * 120.00252 * 120.00265 * 4 2 1 6 6 C 1.37885 * 119.99925 * 300.00111 * 4 2 1 7 7 N 1.31514 * 119.99710 * 180.02562 * 6 4 2 8 8 Si 1.86792 * 120.00069 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.47129 * 90.00086 * 8 6 4 10 10 H 1.48496 * 109.47326 * 210.00047 * 8 6 4 11 11 H 1.48500 * 109.47049 * 330.00137 * 8 6 4 12 12 N 1.46902 * 109.47195 * 239.99620 * 2 1 3 13 13 C 1.47961 * 111.00005 * 60.00056 * 12 2 1 14 14 C 1.53934 * 86.17939 * 137.58072 * 13 12 2 15 15 C 1.52996 * 113.73324 * 221.81496 * 14 13 12 16 16 C 1.53001 * 117.50322 * 246.72450 * 15 14 13 17 17 C 1.53002 * 60.00075 * 252.50968 * 16 15 14 18 18 C 1.48296 * 111.00409 * 159.35357 * 12 2 1 19 19 H 1.08999 * 109.46749 * 180.02562 * 1 2 3 20 20 H 1.08994 * 109.47059 * 300.00252 * 1 2 3 21 21 H 1.09001 * 109.46924 * 60.00426 * 1 2 3 22 22 H 0.97005 * 119.99785 * 180.02562 * 7 6 4 23 23 H 1.09007 * 113.75652 * 23.26342 * 13 12 2 24 24 H 1.08993 * 113.76177 * 251.90248 * 13 12 2 25 25 H 1.09002 * 113.73279 * 90.64057 * 14 13 12 26 26 H 1.09001 * 115.55377 * 32.43311 * 15 14 13 27 27 H 1.09007 * 117.49195 * 359.97438 * 16 15 14 28 28 H 1.08992 * 117.50230 * 145.02159 * 16 15 14 29 29 H 1.08991 * 117.50010 * 252.50473 * 17 16 15 30 30 H 1.09007 * 117.49947 * 107.48291 * 17 16 15 31 31 H 1.09001 * 113.86054 * 108.14174 * 18 12 2 32 32 H 1.09000 * 113.76062 * 336.68481 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1379 -0.8589 3.5566 8 14 0.6259 1.2799 2.6541 9 1 -0.8021 0.8746 2.6992 10 1 0.9771 1.9955 3.9069 11 1 0.8492 2.1773 1.4922 12 7 2.0197 -0.6926 -1.1994 13 6 1.5453 -0.0217 -2.4299 14 6 2.9686 -0.2400 -2.9743 15 6 3.5274 0.9628 -3.7370 16 6 3.7660 0.7981 -5.2392 17 6 4.9547 0.8557 -4.2776 18 6 3.4183 -0.3045 -1.5035 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.9032 -0.5277 4.4376 23 1 1.2862 1.0273 -2.2861 24 1 0.7791 -0.5805 -2.9672 25 1 3.0930 -1.1795 -3.5127 26 1 3.1950 1.9391 -3.3840 27 1 3.5253 -0.1675 -5.6841 28 1 3.5905 1.6659 -5.8749 29 1 5.5611 1.7613 -4.2806 30 1 5.4956 -0.0719 -4.0899 31 1 4.1475 -1.0890 -1.3012 32 1 3.7059 0.6619 -1.0894 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306961778.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:08 Heat of formation + Delta-G solvation = 39.688242 kcal Electronic energy + Delta-G solvation = -12473.929964 eV Core-core repulsion = 10435.613059 eV Total energy + Delta-G solvation = -2038.316906 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.99789 -37.64756 -35.36400 -33.05865 -28.29604 -27.67741 -26.19532 -23.37744 -23.07111 -21.00889 -20.51778 -18.84142 -17.34813 -16.61797 -16.12785 -15.74887 -15.18789 -14.75237 -14.32312 -14.20203 -13.71408 -13.50122 -12.73553 -12.59530 -12.41581 -12.29811 -12.14558 -11.85760 -11.74688 -11.45172 -11.16609 -10.88645 -10.72894 -10.60448 -9.43969 -8.32040 -6.35571 1.26745 1.31422 1.42258 2.28434 2.87488 3.01390 3.23349 3.65224 3.80815 4.10254 4.30264 4.36179 4.42522 4.47022 4.49875 4.60417 4.66201 4.71293 4.84528 4.86067 4.92358 4.99032 5.09471 5.24960 5.26390 5.33918 5.46166 5.62476 5.81226 6.07235 6.61469 6.69909 7.29156 8.85430 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.058215 B = 0.009084 C = 0.008762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.861822 B = 3081.714559 C = 3194.941024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.154 3.846 3 H -0.001 1.001 4 C -0.508 4.508 5 H 0.030 0.970 6 C 0.009 3.991 7 N -0.949 5.949 8 Si 0.953 3.047 9 H -0.264 1.264 10 H -0.295 1.295 11 H -0.251 1.251 12 N -0.492 5.492 13 C 0.007 3.993 14 C -0.065 4.065 15 C -0.159 4.159 16 C -0.163 4.163 17 C -0.179 4.179 18 C 0.017 3.983 19 H 0.052 0.948 20 H 0.035 0.965 21 H 0.065 0.935 22 H 0.267 0.733 23 H 0.066 0.934 24 H 0.093 0.907 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 6.319 -16.197 17.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.046 3.954 3 H 0.016 0.984 4 C -0.547 4.547 5 H 0.049 0.951 6 C -0.188 4.188 7 N -0.590 5.590 8 Si 0.780 3.220 9 H -0.190 1.190 10 H -0.223 1.223 11 H -0.175 1.175 12 N -0.215 5.215 13 C -0.122 4.122 14 C -0.083 4.083 15 C -0.178 4.178 16 C -0.200 4.200 17 C -0.216 4.216 18 C -0.112 4.112 19 H 0.071 0.929 20 H 0.054 0.946 21 H 0.084 0.916 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.111 0.889 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.201 5.624 -15.867 16.835 hybrid contribution -0.106 1.107 0.968 1.475 sum 0.095 6.731 -14.898 16.349 Atomic orbital electron populations 1.22072 0.96846 1.01347 0.99765 1.20040 0.93030 0.92076 0.90298 0.98371 1.21153 1.30924 1.12240 0.90358 0.95138 1.25853 0.97470 1.00200 0.95240 1.70048 1.47759 1.42613 0.98578 0.85782 0.79198 0.79698 0.77313 1.18973 1.22258 1.17491 1.68523 1.04573 1.47015 1.01364 1.23936 0.97725 0.98359 0.92141 1.22434 0.94474 0.98000 0.93433 1.22232 1.00399 0.98389 0.96756 1.23032 1.01801 1.03891 0.91259 1.22972 0.90763 1.03636 1.04192 1.23767 0.92645 0.99229 0.95533 0.92926 0.94600 0.91646 0.92451 0.91595 0.88871 0.88142 0.88261 0.88195 0.87599 0.88057 0.88901 0.91492 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.18 8.57 71.98 0.62 -5.57 16 2 C 0.15 7.48 1.30 44.17 0.06 7.54 16 3 H 0.00 -0.06 6.68 -2.39 -0.02 -0.07 16 4 C -0.51 -30.37 9.19 25.60 0.24 -30.14 16 5 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 6 C 0.01 0.56 5.45 84.66 0.46 1.02 16 7 N -0.95 -60.92 13.96 21.45 0.30 -60.62 16 8 Si 0.95 45.83 24.37 68.60 1.67 47.51 16 9 H -0.26 -12.00 6.87 99.48 0.68 -11.32 16 10 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 11 H -0.25 -11.18 6.53 99.48 0.65 -10.53 16 12 N -0.49 -20.89 5.98 -885.93 -5.30 -26.19 16 13 C 0.01 0.22 6.29 86.41 0.54 0.77 16 14 C -0.06 -1.85 3.98 -10.15 -0.04 -1.89 16 15 C -0.16 -3.70 5.43 -10.79 -0.06 -3.76 16 16 C -0.16 -2.93 10.24 30.60 0.31 -2.62 16 17 C -0.18 -3.57 10.25 30.60 0.31 -3.26 16 18 C 0.02 0.66 7.35 86.34 0.63 1.29 16 19 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 20 H 0.04 1.58 3.27 -2.39 -0.01 1.57 16 21 H 0.06 2.33 7.02 -2.39 -0.02 2.31 16 22 H 0.27 15.92 8.31 -92.70 -0.77 15.15 16 23 H 0.07 2.04 7.60 -2.38 -0.02 2.02 16 24 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 25 H 0.10 2.70 8.12 -2.39 -0.02 2.68 16 26 H 0.10 2.36 8.13 -2.39 -0.02 2.34 16 27 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.06 2.17 7.58 -2.39 -0.02 2.15 16 Total: -1.00 -67.21 254.63 0.74 -66.46 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.99 Total: 9.46 kcal Atomic # 6 Polarization: -39.69 SS G_CDS: 3.08 Total: -36.61 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -5.00 Total: -86.81 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.67 Total: 47.51 kcal Total: -67.21 0.74 -66.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306961778.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.148 kcal (2) G-P(sol) polarization free energy of solvation -67.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds