Wall clock time and date at job start Mon Mar 30 2020 01:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46906 * 109.80787 * 2 1 4 4 C 1.46903 * 110.99912 * 299.47214 * 3 2 1 5 5 C 1.50698 * 109.47090 * 180.02562 * 4 3 2 6 6 H 1.08005 * 119.99727 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00283 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99474 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00298 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47153 * 60.00260 * 9 7 5 11 11 H 1.48496 * 109.47274 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47038 * 300.00061 * 9 7 5 13 13 C 1.53015 * 109.64218 * 239.47297 * 2 1 3 14 14 C 1.50065 * 110.14833 * 289.74888 * 13 2 1 15 15 C 1.29444 * 124.07585 * 342.87120 * 14 13 2 16 16 C 1.50076 * 124.07409 * 0.46662 * 15 14 13 17 17 C 1.53019 * 110.14618 * 342.87111 * 16 15 14 18 18 H 1.09001 * 109.46826 * 180.53329 * 1 2 3 19 19 H 1.08999 * 109.46914 * 300.52448 * 1 2 3 20 20 H 1.08993 * 109.46993 * 60.53298 * 1 2 3 21 21 H 1.00900 * 111.00337 * 63.42510 * 3 2 1 22 22 H 1.09002 * 109.46798 * 300.00451 * 4 3 2 23 23 H 1.08999 * 109.47048 * 60.00156 * 4 3 2 24 24 H 0.97010 * 119.99440 * 179.97438 * 8 7 5 25 25 H 1.08999 * 109.35672 * 169.54200 * 13 2 1 26 26 H 1.09001 * 109.36220 * 49.95322 * 13 2 1 27 27 H 1.08004 * 117.96454 * 162.89273 * 14 13 2 28 28 H 1.08002 * 117.96460 * 180.19240 * 15 14 13 29 29 H 1.08998 * 109.35107 * 103.07595 * 16 15 14 30 30 H 1.09002 * 109.35548 * 222.66187 * 16 15 14 31 31 H 1.09006 * 109.64636 * 289.75252 * 17 16 15 32 32 H 1.09001 * 109.64446 * 169.12043 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0279 1.3821 0.0000 4 6 1.5714 2.1061 -1.1940 5 6 2.1010 3.5165 -1.1593 6 1 2.7156 3.8424 -0.3331 7 6 1.8019 4.3906 -2.1827 8 7 1.0540 3.9936 -3.1890 9 14 2.4578 6.1391 -2.1394 10 1 3.9423 6.1105 -2.1146 11 1 1.9965 6.8709 -3.3464 12 1 1.9555 6.8262 -0.9225 13 6 2.0444 -0.7320 -1.2414 14 6 1.7698 -2.2027 -1.1250 15 6 1.4814 -2.8010 -0.0140 16 6 1.3714 -2.1058 1.3115 17 6 2.0457 -0.7338 1.2445 18 1 -0.3633 -1.0276 0.0096 19 1 -0.3633 0.5220 0.8852 20 1 -0.3633 0.5055 -0.8947 21 1 1.7540 1.8652 0.8424 22 1 1.9397 1.6018 -2.0875 23 1 0.4818 2.1271 -1.2117 24 1 0.8432 4.6087 -3.9089 25 1 3.1183 -0.5714 -1.3364 26 1 1.5427 -0.3397 -2.1260 27 1 1.8161 -2.7992 -2.0242 28 1 1.3047 -3.8661 -0.0433 29 1 0.3193 -1.9792 1.5667 30 1 1.8570 -2.7100 2.0778 31 1 3.1262 -0.8595 1.1742 32 1 1.7979 -0.1597 2.1373 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306971196.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:05 Heat of formation + Delta-G solvation = 1.781708 kcal Electronic energy + Delta-G solvation = -12560.517362 eV Core-core repulsion = 10520.556705 eV Total energy + Delta-G solvation = -2039.960656 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.13182 -34.62877 -32.44873 -30.62399 -29.24795 -26.69812 -25.88412 -23.23200 -21.43523 -19.79528 -16.67871 -16.55260 -15.64918 -14.72282 -14.40876 -13.80943 -13.72643 -13.05227 -12.56814 -12.47026 -12.13835 -11.90960 -11.54841 -11.18370 -11.02383 -10.81456 -10.69663 -10.41158 -10.22779 -9.82638 -9.49559 -9.11601 -8.68112 -8.43321 -7.19488 -5.99751 -4.00965 2.56988 3.35372 3.39078 3.42352 4.45544 4.96721 5.04097 5.22305 5.35906 5.53604 5.60627 5.64705 5.79672 5.83457 6.00334 6.08790 6.25114 6.35317 6.39101 6.44306 6.54082 6.69851 6.80992 6.99736 7.25284 7.37729 7.52878 7.83330 8.18897 8.47662 8.69388 9.08538 9.63432 11.11196 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.072233 B = 0.008244 C = 0.007940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.539220 B = 3395.609206 C = 3525.650168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.114 3.886 3 N -0.681 5.681 4 C 0.191 3.809 5 C -0.514 4.514 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 C -0.080 4.080 14 C -0.138 4.138 15 C -0.172 4.172 16 C -0.087 4.087 17 C -0.105 4.105 18 H 0.053 0.947 19 H 0.046 0.954 20 H 0.062 0.938 21 H 0.328 0.672 22 H 0.030 0.970 23 H -0.009 1.009 24 H 0.261 0.739 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.303 -10.528 6.212 12.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.022 3.978 3 N -0.310 5.310 4 C 0.064 3.936 5 C -0.553 4.553 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.117 4.117 14 C -0.157 4.157 15 C -0.190 4.190 16 C -0.124 4.124 17 C -0.143 4.143 18 H 0.072 0.928 19 H 0.065 0.935 20 H 0.081 0.919 21 H 0.145 0.855 22 H 0.048 0.952 23 H 0.009 0.991 24 H 0.071 0.929 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.237 -10.616 5.748 12.075 hybrid contribution -0.711 1.052 -0.001 1.269 sum -0.474 -9.564 5.747 11.168 Atomic orbital electron populations 1.22572 0.97958 1.01250 1.01993 1.20835 0.91648 0.91080 0.94250 1.60850 1.62940 1.00469 1.06785 1.19607 0.93517 0.92642 0.87803 1.21199 1.31350 0.95910 1.06840 0.92160 1.24976 0.95312 0.98838 0.95449 1.69956 1.37760 1.35829 1.10269 0.86565 0.79336 0.84284 0.77224 1.20201 1.21381 1.20333 1.20512 1.02022 0.90826 0.98364 1.22184 0.99227 0.96867 0.97418 1.21937 1.03240 0.98918 0.94877 1.20455 1.00810 0.95983 0.95174 1.21611 1.00437 0.94634 0.97596 0.92758 0.93462 0.91928 0.85545 0.95167 0.99126 0.92941 0.90097 0.90714 0.88425 0.88706 0.91204 0.91804 0.91468 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 7.60 37.16 0.28 -2.85 16 2 C 0.11 2.05 0.72 -131.38 -0.09 1.95 16 3 N -0.68 -14.75 6.09 -100.99 -0.61 -15.36 16 4 C 0.19 4.99 4.69 -4.98 -0.02 4.97 16 5 C -0.51 -14.72 9.32 -34.44 -0.32 -15.04 16 6 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 9 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C -0.08 -1.43 4.27 -28.18 -0.12 -1.55 16 14 C -0.14 -2.04 9.41 -35.90 -0.34 -2.38 16 15 C -0.17 -2.28 9.15 -35.90 -0.33 -2.61 16 16 C -0.09 -1.12 5.48 -28.17 -0.15 -1.27 16 17 C -0.10 -1.58 5.21 -26.52 -0.14 -1.72 16 18 H 0.05 0.85 5.67 -51.93 -0.29 0.55 16 19 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 20 H 0.06 1.24 6.48 -51.93 -0.34 0.91 16 21 H 0.33 6.87 8.73 -39.29 -0.34 6.52 16 22 H 0.03 0.85 6.57 -51.93 -0.34 0.51 16 23 H -0.01 -0.25 6.36 -51.93 -0.33 -0.58 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 26 H 0.07 1.46 7.00 -51.93 -0.36 1.10 16 27 H 0.10 1.29 8.06 -52.48 -0.42 0.86 16 28 H 0.09 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.07 0.87 6.91 -51.93 -0.36 0.51 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.05 8.12 -51.93 -0.42 0.62 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 252.17 15.07 3.80 3.80 Total: -1.00 -29.46 252.17 -7.30 -36.77 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -4.87 Total: 3.17 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -1.33 Total: -19.00 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.12 Total: -41.64 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.46 -7.30 -36.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306971196.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.549 kcal (2) G-P(sol) polarization free energy of solvation -29.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds