Wall clock time and date at job start Mon Mar 30 2020 01:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46906 * 109.80787 * 2 1 4 4 C 1.46903 * 110.99912 * 299.47214 * 3 2 1 5 5 C 1.50698 * 109.47090 * 180.02562 * 4 3 2 6 6 H 1.08005 * 119.99727 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00283 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99474 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00298 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47153 * 60.00260 * 9 7 5 11 11 H 1.48496 * 109.47274 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47038 * 300.00061 * 9 7 5 13 13 C 1.53015 * 109.64218 * 239.47297 * 2 1 3 14 14 C 1.50065 * 110.14833 * 289.74888 * 13 2 1 15 15 C 1.29444 * 124.07585 * 342.87120 * 14 13 2 16 16 C 1.50076 * 124.07409 * 0.46662 * 15 14 13 17 17 C 1.53019 * 110.14618 * 342.87111 * 16 15 14 18 18 H 1.09001 * 109.46826 * 180.53329 * 1 2 3 19 19 H 1.08999 * 109.46914 * 300.52448 * 1 2 3 20 20 H 1.08993 * 109.46993 * 60.53298 * 1 2 3 21 21 H 1.00900 * 111.00337 * 63.42510 * 3 2 1 22 22 H 1.09002 * 109.46798 * 300.00451 * 4 3 2 23 23 H 1.08999 * 109.47048 * 60.00156 * 4 3 2 24 24 H 0.97010 * 119.99440 * 179.97438 * 8 7 5 25 25 H 1.08999 * 109.35672 * 169.54200 * 13 2 1 26 26 H 1.09001 * 109.36220 * 49.95322 * 13 2 1 27 27 H 1.08004 * 117.96454 * 162.89273 * 14 13 2 28 28 H 1.08002 * 117.96460 * 180.19240 * 15 14 13 29 29 H 1.08998 * 109.35107 * 103.07595 * 16 15 14 30 30 H 1.09002 * 109.35548 * 222.66187 * 16 15 14 31 31 H 1.09006 * 109.64636 * 289.75252 * 17 16 15 32 32 H 1.09001 * 109.64446 * 169.12043 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0279 1.3821 0.0000 4 6 1.5714 2.1061 -1.1940 5 6 2.1010 3.5165 -1.1593 6 1 2.7156 3.8424 -0.3331 7 6 1.8019 4.3906 -2.1827 8 7 1.0540 3.9936 -3.1890 9 14 2.4578 6.1391 -2.1394 10 1 3.9423 6.1105 -2.1146 11 1 1.9965 6.8709 -3.3464 12 1 1.9555 6.8262 -0.9225 13 6 2.0444 -0.7320 -1.2414 14 6 1.7698 -2.2027 -1.1250 15 6 1.4814 -2.8010 -0.0140 16 6 1.3714 -2.1058 1.3115 17 6 2.0457 -0.7338 1.2445 18 1 -0.3633 -1.0276 0.0096 19 1 -0.3633 0.5220 0.8852 20 1 -0.3633 0.5055 -0.8947 21 1 1.7540 1.8652 0.8424 22 1 1.9397 1.6018 -2.0875 23 1 0.4818 2.1271 -1.2117 24 1 0.8432 4.6087 -3.9089 25 1 3.1183 -0.5714 -1.3364 26 1 1.5427 -0.3397 -2.1260 27 1 1.8161 -2.7992 -2.0242 28 1 1.3047 -3.8661 -0.0433 29 1 0.3193 -1.9792 1.5667 30 1 1.8570 -2.7100 2.0778 31 1 3.1262 -0.8595 1.1742 32 1 1.7979 -0.1597 2.1373 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306971196.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:05 Heat of formation + Delta-G solvation = -17.288507 kcal Electronic energy + Delta-G solvation = -12561.344309 eV Core-core repulsion = 10520.556705 eV Total energy + Delta-G solvation = -2040.787603 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.51041 -36.30393 -34.46223 -31.89419 -30.88831 -28.19852 -27.77534 -24.80074 -23.12553 -21.21532 -18.68120 -17.85594 -17.06868 -16.71539 -15.87754 -15.43030 -15.25528 -14.50669 -14.20751 -13.91242 -13.86143 -13.35698 -13.08506 -12.82914 -12.77487 -12.51801 -12.32078 -12.14919 -11.76294 -11.37936 -11.12464 -10.93973 -10.63548 -9.81895 -9.03260 -8.21284 -6.32042 1.39941 1.43680 1.46204 1.51646 2.40073 3.11537 3.51988 3.76756 3.98598 4.20425 4.31425 4.44317 4.52225 4.60953 4.73203 4.82040 4.89592 5.01122 5.06900 5.13983 5.14820 5.24006 5.28784 5.45076 5.53983 5.65481 5.83188 6.06812 6.11418 6.53016 6.78141 6.94581 7.38562 8.89792 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.072233 B = 0.008244 C = 0.007940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.539220 B = 3395.609206 C = 3525.650168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.682 5.682 4 C 0.210 3.790 5 C -0.539 4.539 6 H 0.062 0.938 7 C 0.001 3.999 8 N -0.934 5.934 9 Si 0.972 3.028 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.266 1.266 13 C -0.077 4.077 14 C -0.163 4.163 15 C -0.151 4.151 16 C -0.087 4.087 17 C -0.099 4.099 18 H 0.078 0.922 19 H 0.054 0.946 20 H 0.027 0.973 21 H 0.332 0.668 22 H 0.001 0.999 23 H -0.034 1.034 24 H 0.264 0.736 25 H 0.061 0.939 26 H 0.040 0.960 27 H 0.111 0.889 28 H 0.126 0.874 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.112 -11.334 7.909 13.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 N -0.312 5.312 4 C 0.083 3.917 5 C -0.577 4.577 6 H 0.080 0.920 7 C -0.198 4.198 8 N -0.574 5.574 9 Si 0.796 3.204 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.191 1.191 13 C -0.114 4.114 14 C -0.181 4.181 15 C -0.169 4.169 16 C -0.124 4.124 17 C -0.137 4.137 18 H 0.096 0.904 19 H 0.073 0.927 20 H 0.046 0.954 21 H 0.150 0.850 22 H 0.019 0.981 23 H -0.016 1.016 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.129 0.871 28 H 0.144 0.856 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.430 -11.441 7.466 13.668 hybrid contribution -0.779 1.237 -0.501 1.545 sum -0.349 -10.204 6.964 12.359 Atomic orbital electron populations 1.22460 0.97392 1.02336 1.00592 1.21055 0.92157 0.89148 0.96208 1.60746 1.63173 1.02035 1.05249 1.19180 0.91634 0.92217 0.88690 1.21600 1.31691 0.97208 1.07194 0.91976 1.25946 0.95345 1.03617 0.94844 1.70096 1.38819 1.37544 1.10972 0.85402 0.78829 0.78453 0.77704 1.19409 1.20761 1.19091 1.20389 1.00407 0.93548 0.97062 1.22057 1.02220 0.94743 0.99128 1.22271 1.00040 1.00380 0.94195 1.20547 1.01558 0.94562 0.95779 1.21574 1.00268 0.95964 0.95913 0.90357 0.92650 0.95420 0.85028 0.98107 1.01630 0.92712 0.92023 0.94085 0.87116 0.85582 0.89964 0.88807 0.92013 0.91130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.89 7.60 71.98 0.55 -5.35 16 2 C 0.11 3.81 0.72 3.67 0.00 3.81 16 3 N -0.68 -30.28 6.09 -473.44 -2.88 -33.17 16 4 C 0.21 11.55 4.69 85.56 0.40 11.95 16 5 C -0.54 -31.57 9.32 25.60 0.24 -31.33 16 6 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 7 C 0.00 0.03 5.46 84.65 0.46 0.49 16 8 N -0.93 -57.64 13.29 21.45 0.28 -57.36 16 9 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 13 C -0.08 -2.83 4.27 29.65 0.13 -2.70 16 14 C -0.16 -4.61 9.41 27.04 0.25 -4.36 16 15 C -0.15 -3.48 9.15 27.04 0.25 -3.24 16 16 C -0.09 -1.89 5.48 29.66 0.16 -1.73 16 17 C -0.10 -2.79 5.21 30.73 0.16 -2.63 16 18 H 0.08 2.31 5.67 -2.39 -0.01 2.30 16 19 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 20 H 0.03 1.13 6.48 -2.39 -0.02 1.12 16 21 H 0.33 14.04 8.73 -89.69 -0.78 13.25 16 22 H 0.00 0.05 6.57 -2.39 -0.02 0.04 16 23 H -0.03 -1.99 6.36 -2.39 -0.02 -2.01 16 24 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 25 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.04 1.74 7.00 -2.39 -0.02 1.72 16 27 H 0.11 2.80 8.06 -2.91 -0.02 2.78 16 28 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 29 H 0.08 1.66 6.91 -2.39 -0.02 1.65 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.06 1.81 8.12 -2.38 -0.02 1.79 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -64.83 252.17 2.34 -62.49 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.31 Total: 15.90 kcal Atomic # 6 Polarization: -37.67 SS G_CDS: 2.60 Total: -35.07 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -2.60 Total: -90.53 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -64.83 2.34 -62.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306971196.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.205 kcal (2) G-P(sol) polarization free energy of solvation -64.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds