Wall clock time and date at job start Mon Mar 30 2020 02:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 120.00135 * 2 1 4 4 C 1.50695 * 119.99940 * 179.97438 * 2 1 3 5 5 N 1.46904 * 109.47028 * 93.21865 * 4 2 1 6 6 C 1.47901 * 110.99907 * 284.25992 * 5 4 2 7 7 C 1.53993 * 107.05884 * 145.84405 * 6 5 4 8 8 C 1.54602 * 105.13818 * 358.77539 * 7 6 5 9 9 H 1.08991 * 110.72584 * 96.58410 * 8 7 6 10 10 C 1.50704 * 110.72108 * 219.68814 * 8 7 6 11 11 H 1.08004 * 120.00272 * 118.54461 * 10 8 7 12 12 C 1.37876 * 120.00012 * 298.53987 * 10 8 7 13 13 N 1.31522 * 119.99857 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 120.00272 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47378 * 270.00398 * 14 12 10 16 16 H 1.48500 * 109.46970 * 30.00398 * 14 12 10 17 17 H 1.48503 * 109.47039 * 150.00428 * 14 12 10 18 18 C 1.48533 * 110.99797 * 41.65346 * 5 4 2 19 19 H 1.08001 * 120.00081 * 179.97438 * 1 2 3 20 20 H 1.08001 * 120.00287 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46949 * 275.92490 * 3 2 1 22 22 H 1.09002 * 109.47266 * 35.92044 * 3 2 1 23 23 H 1.08997 * 109.47434 * 155.91762 * 3 2 1 24 24 H 1.09006 * 109.47418 * 333.22062 * 4 2 1 25 25 H 1.08998 * 109.47528 * 213.21643 * 4 2 1 26 26 H 1.08998 * 109.91828 * 26.48585 * 6 5 4 27 27 H 1.09003 * 109.91720 * 265.19276 * 6 5 4 28 28 H 1.08999 * 110.30810 * 239.85760 * 7 6 5 29 29 H 1.08997 * 110.31175 * 117.68497 * 7 6 5 30 30 H 0.97000 * 119.99846 * 359.97438 * 13 12 10 31 31 H 1.09004 * 110.66579 * 81.84633 * 18 5 4 32 32 H 1.08996 * 110.67124 * 318.71525 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 0.0006 5 7 2.3756 -1.6909 -1.3821 6 6 1.1763 -2.2173 -2.0691 7 6 1.2778 -1.7912 -3.5454 8 6 2.5845 -0.9704 -3.6398 9 1 3.4081 -1.5947 -3.9861 10 6 2.4024 0.2197 -4.5463 11 1 2.5232 1.2194 -4.1559 12 6 2.0816 0.0322 -5.8740 13 7 1.9340 -1.1852 -6.3493 14 14 1.8551 1.5073 -6.9975 15 1 0.4335 1.9357 -6.9715 16 1 2.7169 2.6226 -6.5299 17 1 2.2349 1.1361 -8.3844 18 6 2.8140 -0.5150 -2.1767 19 1 -0.5400 -0.9353 -0.0004 20 1 -0.5401 0.9353 -0.0004 21 1 2.1533 1.6727 -1.0222 22 1 1.5244 2.0359 0.6029 23 1 3.0576 1.1506 0.4193 24 1 1.4506 -2.0783 0.4640 25 1 2.9897 -1.1897 0.5635 26 1 0.2766 -1.7948 -1.6217 27 1 1.1545 -3.3047 -1.9972 28 1 0.4226 -1.1741 -3.8207 29 1 1.3351 -2.6688 -4.1894 30 1 2.0513 -1.9512 -5.7658 31 1 3.8687 -0.3033 -2.0006 32 1 2.2016 0.3563 -1.9444 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306982299.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:39 Heat of formation + Delta-G solvation = 16.084656 kcal Electronic energy + Delta-G solvation = -12805.777800 eV Core-core repulsion = 10766.437365 eV Total energy + Delta-G solvation = -2039.340434 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.86080 -35.14420 -32.84573 -29.89590 -28.56345 -26.89163 -25.17794 -23.69917 -20.31626 -19.60558 -18.22365 -16.91209 -15.40810 -14.75215 -14.25798 -14.12361 -13.72257 -13.40687 -12.73764 -12.31562 -11.83094 -11.65965 -11.44412 -11.21212 -10.85055 -10.67912 -10.53068 -10.44862 -10.09181 -9.75382 -9.33822 -8.90939 -8.44696 -8.31193 -7.73467 -6.30199 -4.02452 2.42255 3.43876 3.47326 3.63014 4.53687 4.76226 5.04998 5.15942 5.41729 5.54828 5.70518 5.76469 5.84547 5.93568 6.03578 6.03994 6.13720 6.21949 6.38479 6.52146 6.73585 6.80720 6.97045 6.99128 7.05828 7.30774 7.51546 7.64975 7.77195 8.30147 8.46610 8.92731 9.70097 11.08265 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.043899 B = 0.011132 C = 0.009976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.671622 B = 2514.735640 C = 2806.071957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.146 4.146 3 C -0.122 4.122 4 C 0.077 3.923 5 N -0.515 5.515 6 C 0.030 3.970 7 C -0.119 4.119 8 C 0.035 3.965 9 H 0.025 0.975 10 C -0.593 4.593 11 H 0.048 0.952 12 C 0.020 3.980 13 N -0.914 5.914 14 Si 1.068 2.932 15 H -0.289 1.289 16 H -0.289 1.289 17 H -0.284 1.284 18 C 0.035 3.965 19 H 0.094 0.906 20 H 0.093 0.907 21 H 0.079 0.921 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.273 0.727 31 H 0.059 0.941 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.690 1.882 10.657 10.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.148 4.148 3 C -0.178 4.178 4 C -0.051 4.051 5 N -0.237 5.237 6 C -0.098 4.098 7 C -0.158 4.158 8 C 0.016 3.984 9 H 0.043 0.957 10 C -0.632 4.632 11 H 0.066 0.934 12 C -0.185 4.185 13 N -0.550 5.550 14 Si 0.897 3.103 15 H -0.216 1.216 16 H -0.215 1.215 17 H -0.210 1.210 18 C -0.092 4.092 19 H 0.112 0.888 20 H 0.112 0.888 21 H 0.097 0.903 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.607 1.896 9.130 9.462 hybrid contribution -0.402 0.139 1.584 1.640 sum -2.009 2.036 10.714 11.089 Atomic orbital electron populations 1.23629 0.95298 1.01399 1.02893 1.22412 0.95990 0.97389 0.99011 1.21115 0.99686 0.94340 1.02681 1.21473 0.98656 0.92233 0.92759 1.65091 1.29104 1.28906 1.00614 1.22972 0.91566 0.98856 0.96375 1.22590 1.01395 0.99611 0.92168 1.19709 0.92624 0.95291 0.90789 0.95698 1.21941 1.52676 0.92401 0.96191 0.93389 1.25753 0.93852 1.02065 0.96784 1.70748 1.45839 0.98651 1.39774 0.83553 0.76438 0.74342 0.75943 1.21596 1.21542 1.21020 1.23609 0.98993 0.91642 0.94920 0.88773 0.88821 0.90265 0.92483 0.92070 0.91285 0.90766 0.94356 0.92099 0.92243 0.92957 0.91471 0.92219 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.87 12.74 29.02 0.37 -2.50 16 2 C -0.15 -2.27 3.95 -101.07 -0.40 -2.67 16 3 C -0.12 -1.74 9.02 36.00 0.32 -1.42 16 4 C 0.08 1.24 5.73 -4.98 -0.03 1.21 16 5 N -0.51 -10.07 5.54 -231.89 -1.28 -11.36 16 6 C 0.03 0.60 6.44 -2.75 -0.02 0.58 16 7 C -0.12 -2.83 5.34 -25.37 -0.14 -2.97 16 8 C 0.03 0.90 2.62 -89.91 -0.24 0.66 16 9 H 0.02 0.70 8.08 -51.93 -0.42 0.28 16 10 C -0.59 -16.70 8.42 -34.44 -0.29 -16.99 16 11 H 0.05 1.34 7.78 -52.48 -0.41 0.93 16 12 C 0.02 0.57 5.33 -17.82 -0.10 0.47 16 13 N -0.91 -27.58 13.42 55.43 0.74 -26.84 16 14 Si 1.07 25.32 29.90 -169.99 -5.08 20.24 16 15 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 C 0.03 0.76 5.26 -1.90 -0.01 0.75 16 19 H 0.09 1.34 7.19 -52.49 -0.38 0.96 16 20 H 0.09 1.28 8.05 -52.49 -0.42 0.86 16 21 H 0.08 1.28 6.32 -51.93 -0.33 0.95 16 22 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 23 H 0.06 0.81 8.01 -51.93 -0.42 0.39 16 24 H 0.07 1.01 7.87 -51.93 -0.41 0.61 16 25 H 0.07 1.10 8.04 -51.93 -0.42 0.68 16 26 H 0.04 0.72 5.49 -51.93 -0.29 0.43 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.06 1.52 7.84 -51.93 -0.41 1.11 16 29 H 0.05 1.27 6.97 -51.93 -0.36 0.91 16 30 H 0.27 8.19 5.53 -40.82 -0.23 7.96 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.06 1.29 3.71 -51.93 -0.19 1.09 16 LS Contribution 250.31 15.07 3.77 3.77 Total: -1.00 -29.62 250.31 -7.10 -36.72 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -4.73 Total: 0.33 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: -0.52 Total: -22.87 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: -0.54 Total: -38.20 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.08 Total: 20.24 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.62 -7.10 -36.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306982299.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.809 kcal (2) G-P(sol) polarization free energy of solvation -29.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds