Wall clock time and date at job start Mon Mar 30 2020 02:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 120.00135 * 2 1 4 4 C 1.50695 * 119.99940 * 179.97438 * 2 1 3 5 5 N 1.46904 * 109.47028 * 93.21865 * 4 2 1 6 6 C 1.47901 * 110.99907 * 284.25992 * 5 4 2 7 7 C 1.53993 * 107.05884 * 145.84405 * 6 5 4 8 8 C 1.54602 * 105.13818 * 358.77539 * 7 6 5 9 9 H 1.08991 * 110.72584 * 96.58410 * 8 7 6 10 10 C 1.50704 * 110.72108 * 219.68814 * 8 7 6 11 11 H 1.08004 * 120.00272 * 118.54461 * 10 8 7 12 12 C 1.37876 * 120.00012 * 298.53987 * 10 8 7 13 13 N 1.31522 * 119.99857 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 120.00272 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47378 * 270.00398 * 14 12 10 16 16 H 1.48500 * 109.46970 * 30.00398 * 14 12 10 17 17 H 1.48503 * 109.47039 * 150.00428 * 14 12 10 18 18 C 1.48533 * 110.99797 * 41.65346 * 5 4 2 19 19 H 1.08001 * 120.00081 * 179.97438 * 1 2 3 20 20 H 1.08001 * 120.00287 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46949 * 275.92490 * 3 2 1 22 22 H 1.09002 * 109.47266 * 35.92044 * 3 2 1 23 23 H 1.08997 * 109.47434 * 155.91762 * 3 2 1 24 24 H 1.09006 * 109.47418 * 333.22062 * 4 2 1 25 25 H 1.08998 * 109.47528 * 213.21643 * 4 2 1 26 26 H 1.08998 * 109.91828 * 26.48585 * 6 5 4 27 27 H 1.09003 * 109.91720 * 265.19276 * 6 5 4 28 28 H 1.08999 * 110.30810 * 239.85760 * 7 6 5 29 29 H 1.08997 * 110.31175 * 117.68497 * 7 6 5 30 30 H 0.97000 * 119.99846 * 359.97438 * 13 12 10 31 31 H 1.09004 * 110.66579 * 81.84633 * 18 5 4 32 32 H 1.08996 * 110.67124 * 318.71525 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 0.0006 5 7 2.3756 -1.6909 -1.3821 6 6 1.1763 -2.2173 -2.0691 7 6 1.2778 -1.7912 -3.5454 8 6 2.5845 -0.9704 -3.6398 9 1 3.4081 -1.5947 -3.9861 10 6 2.4024 0.2197 -4.5463 11 1 2.5232 1.2194 -4.1559 12 6 2.0816 0.0322 -5.8740 13 7 1.9340 -1.1852 -6.3493 14 14 1.8551 1.5073 -6.9975 15 1 0.4335 1.9357 -6.9715 16 1 2.7169 2.6226 -6.5299 17 1 2.2349 1.1361 -8.3844 18 6 2.8140 -0.5150 -2.1767 19 1 -0.5400 -0.9353 -0.0004 20 1 -0.5401 0.9353 -0.0004 21 1 2.1533 1.6727 -1.0222 22 1 1.5244 2.0359 0.6029 23 1 3.0576 1.1506 0.4193 24 1 1.4506 -2.0783 0.4640 25 1 2.9897 -1.1897 0.5635 26 1 0.2766 -1.7948 -1.6217 27 1 1.1545 -3.3047 -1.9972 28 1 0.4226 -1.1741 -3.8207 29 1 1.3351 -2.6688 -4.1894 30 1 2.0513 -1.9512 -5.7658 31 1 3.8687 -0.3033 -2.0006 32 1 2.2016 0.3563 -1.9444 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306982299.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:39 Heat of formation + Delta-G solvation = -2.907154 kcal Electronic energy + Delta-G solvation = -12806.601346 eV Core-core repulsion = 10766.437365 eV Total energy + Delta-G solvation = -2040.163981 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.43596 -36.73191 -34.69282 -31.63872 -30.24533 -28.22279 -26.77463 -25.63583 -21.97307 -21.51355 -19.48796 -18.94547 -17.03685 -16.29649 -15.80312 -15.69515 -15.37811 -14.88938 -14.47178 -13.92590 -13.55438 -13.19073 -12.96801 -12.67601 -12.51981 -12.25407 -12.17409 -11.96870 -11.93733 -11.68758 -11.25082 -10.58077 -10.47596 -10.10395 -9.25942 -8.57976 -6.31355 1.24673 1.52344 1.61040 1.78426 2.57473 3.19376 3.25916 3.85761 3.92429 4.03958 4.14807 4.31168 4.45548 4.54209 4.67635 4.71412 4.79770 4.84874 4.88859 4.95201 5.06678 5.08799 5.20383 5.36088 5.61303 5.65023 5.75424 5.93147 6.15681 6.19867 6.25189 6.67173 7.49902 8.80697 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.043899 B = 0.011132 C = 0.009976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.671622 B = 2514.735640 C = 2806.071957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.164 4.164 3 C -0.120 4.120 4 C 0.076 3.924 5 N -0.521 5.521 6 C 0.040 3.960 7 C -0.110 4.110 8 C 0.021 3.979 9 H -0.008 1.008 10 C -0.605 4.605 11 H 0.046 0.954 12 C -0.030 4.030 13 N -0.939 5.939 14 Si 1.114 2.886 15 H -0.275 1.275 16 H -0.271 1.271 17 H -0.285 1.285 18 C 0.049 3.951 19 H 0.100 0.900 20 H 0.104 0.896 21 H 0.057 0.943 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.262 0.738 31 H 0.060 0.940 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.248 2.735 12.032 12.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.165 4.165 3 C -0.176 4.176 4 C -0.052 4.052 5 N -0.244 5.244 6 C -0.088 4.088 7 C -0.149 4.149 8 C 0.002 3.998 9 H 0.010 0.990 10 C -0.643 4.643 11 H 0.065 0.935 12 C -0.229 4.229 13 N -0.577 5.577 14 Si 0.937 3.063 15 H -0.201 1.201 16 H -0.196 1.196 17 H -0.210 1.210 18 C -0.078 4.078 19 H 0.119 0.881 20 H 0.122 0.878 21 H 0.075 0.925 22 H 0.095 0.905 23 H 0.088 0.912 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.162 2.745 10.540 11.104 hybrid contribution -0.224 -0.153 1.210 1.240 sum -2.386 2.593 11.750 12.267 Atomic orbital electron populations 1.23845 0.95235 1.02300 1.01387 1.22480 0.96373 0.97478 1.00199 1.21076 1.00532 0.94353 1.01656 1.21583 0.99961 0.93188 0.90422 1.65055 1.29140 1.28044 1.02121 1.22885 0.92521 0.99977 0.93438 1.22368 0.99346 0.98201 0.94989 1.19714 0.92388 0.94521 0.93147 0.99024 1.22289 1.51987 0.93111 0.96955 0.93546 1.27196 0.93113 1.03731 0.98841 1.70863 1.47844 0.99165 1.39789 0.82965 0.77469 0.71804 0.74099 1.20056 1.19561 1.21023 1.23383 0.99302 0.92587 0.92565 0.88132 0.87792 0.92486 0.90548 0.91179 0.89503 0.89384 0.92770 0.90403 0.94514 0.94565 0.92688 0.92156 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.04 12.74 67.78 0.86 -4.17 16 2 C -0.16 -4.63 3.95 -16.49 -0.07 -4.69 16 3 C -0.12 -3.15 9.02 71.23 0.64 -2.51 16 4 C 0.08 2.21 5.73 85.55 0.49 2.70 16 5 N -0.52 -19.49 5.54 -887.56 -4.91 -24.40 16 6 C 0.04 1.52 6.44 86.45 0.56 2.08 16 7 C -0.11 -5.32 5.34 31.48 0.17 -5.15 16 8 C 0.02 1.12 2.62 -10.33 -0.03 1.09 16 9 H -0.01 -0.49 8.08 -2.39 -0.02 -0.51 16 10 C -0.61 -34.46 8.42 25.60 0.22 -34.25 16 11 H 0.05 2.59 7.78 -2.91 -0.02 2.57 16 12 C -0.03 -1.75 5.33 84.65 0.45 -1.30 16 13 N -0.94 -57.91 13.42 21.45 0.29 -57.62 16 14 Si 1.11 50.67 29.90 68.60 2.05 52.72 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 16 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 18 C 0.05 2.08 5.26 86.65 0.46 2.54 16 19 H 0.10 2.52 7.19 -2.91 -0.02 2.50 16 20 H 0.10 2.53 8.05 -2.91 -0.02 2.51 16 21 H 0.06 1.76 6.32 -2.39 -0.02 1.75 16 22 H 0.08 1.68 8.11 -2.39 -0.02 1.66 16 23 H 0.07 1.68 8.01 -2.39 -0.02 1.67 16 24 H 0.09 2.23 7.87 -2.38 -0.02 2.21 16 25 H 0.09 2.33 8.04 -2.39 -0.02 2.31 16 26 H 0.05 1.90 5.49 -2.39 -0.01 1.89 16 27 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.04 1.89 7.84 -2.39 -0.02 1.87 16 29 H 0.04 1.81 6.97 -2.39 -0.02 1.80 16 30 H 0.26 16.30 5.53 -92.71 -0.51 15.78 16 31 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 32 H 0.07 2.73 3.71 -2.39 -0.01 2.72 16 Total: -1.00 -63.44 250.31 2.51 -60.93 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 1.33 Total: 12.04 kcal Atomic # 6 Polarization: -47.43 SS G_CDS: 3.75 Total: -43.68 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -4.63 Total: -82.02 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 2.05 Total: 52.72 kcal Total: -63.44 2.51 -60.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306982299.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.025 kcal (2) G-P(sol) polarization free energy of solvation -63.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds