Wall clock time and date at job start Mon Mar 30 2020 01:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.29823 * 118.35419 * 2 1 4 4 C 1.50313 * 122.88842 * 180.41952 * 3 2 1 5 5 C 1.53080 * 109.71988 * 343.48256 * 4 3 2 6 6 N 1.47241 * 108.47080 * 48.96252 * 5 4 3 7 7 C 1.46897 * 111.00217 * 54.58777 * 6 5 4 8 8 H 1.09000 * 109.46434 * 295.58296 * 7 6 5 9 9 C 1.52997 * 109.47177 * 175.58663 * 7 6 5 10 10 C 1.50701 * 109.47107 * 55.58030 * 7 6 5 11 11 H 1.07999 * 119.99736 * 359.73072 * 10 7 6 12 12 C 1.37875 * 119.99761 * 180.02562 * 10 7 6 13 13 N 1.31516 * 120.00017 * 359.72509 * 12 10 7 14 14 Si 1.86801 * 119.99855 * 179.72918 * 12 10 7 15 15 H 1.48499 * 109.47222 * 59.99613 * 14 12 10 16 16 H 1.48497 * 109.47183 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47042 * 299.99719 * 14 12 10 18 18 C 1.46847 * 110.20480 * 291.19228 * 6 5 4 19 19 H 1.09003 * 109.47412 * 359.97438 * 1 2 3 20 20 H 1.08994 * 109.47511 * 119.99996 * 1 2 3 21 21 H 1.09002 * 109.46893 * 239.99932 * 1 2 3 22 22 H 1.08000 * 118.55666 * 0.39729 * 3 2 1 23 23 H 1.09001 * 109.42856 * 223.40318 * 4 3 2 24 24 H 1.08999 * 109.42652 * 103.55940 * 4 3 2 25 25 H 1.09007 * 109.63709 * 289.27173 * 5 4 3 26 26 H 1.08998 * 109.81144 * 168.76021 * 5 4 3 27 27 H 1.08996 * 109.46973 * 306.28717 * 9 7 6 28 28 H 1.08998 * 109.47374 * 66.29295 * 9 7 6 29 29 H 1.09001 * 109.47138 * 186.28887 * 9 7 6 30 30 H 0.97006 * 120.00001 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.33372 * 171.16824 * 18 6 5 32 32 H 1.08996 * 109.34021 * 290.68257 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1236 1.1425 0.0000 4 6 3.6220 1.2613 -0.0092 5 6 4.2487 -0.0765 0.3918 6 7 3.6205 -1.1434 -0.4050 7 6 3.7205 -0.8557 -1.8421 8 1 3.1506 0.0443 -2.0728 9 6 3.1572 -2.0343 -2.6386 10 6 5.1658 -0.6439 -2.2125 11 1 5.9329 -0.7115 -1.4552 12 6 5.5083 -0.3578 -3.5170 13 7 4.5742 -0.2751 -4.4391 14 14 7.2991 -0.0877 -3.9748 15 1 8.0806 -1.3102 -3.6585 16 1 7.4004 0.2018 -5.4277 17 1 7.8400 1.0592 -3.2021 18 6 2.2202 -1.3212 -0.0001 19 1 -0.3634 1.0277 0.0005 20 1 -0.3634 -0.5138 -0.8899 21 1 -0.3633 -0.5139 0.8900 22 1 1.5340 2.0473 0.0066 23 1 3.9289 2.0320 0.6978 24 1 3.9579 1.5337 -1.0098 25 1 4.0738 -0.2598 1.4520 26 1 5.3207 -0.0558 0.1957 27 1 3.6520 -2.9538 -2.3259 28 1 2.0860 -2.1178 -2.4555 29 1 3.3324 -1.8710 -3.7020 30 1 4.8152 -0.0741 -5.3570 31 1 1.7260 -1.9978 -0.6973 32 1 2.1857 -1.7504 1.0013 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307126288.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:25 Heat of formation + Delta-G solvation = 15.348970 kcal Electronic energy + Delta-G solvation = -12978.528355 eV Core-core repulsion = 10939.156019 eV Total energy + Delta-G solvation = -2039.372336 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.92565 -34.13607 -32.25933 -31.06609 -28.63639 -26.51172 -24.85110 -23.58230 -21.74665 -19.77332 -16.82366 -15.86888 -15.38785 -14.41362 -14.12708 -13.94616 -13.48275 -13.01034 -12.64453 -11.90103 -11.78055 -11.47402 -11.30542 -11.21715 -10.96513 -10.69124 -10.49509 -10.31198 -10.03545 -9.78433 -9.63880 -8.79790 -8.36279 -8.13360 -7.05809 -5.96182 -4.00849 2.77961 3.33991 3.38467 3.41352 4.44293 5.09266 5.34172 5.43895 5.45571 5.85072 5.89109 5.92184 5.99475 6.16468 6.23873 6.28396 6.35642 6.46214 6.78547 6.82574 6.94982 7.11213 7.23137 7.27194 7.51211 7.65112 7.80694 7.88153 8.28461 8.40301 8.67969 9.06167 9.63760 11.10035 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.048163 B = 0.012009 C = 0.011180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.224984 B = 2330.982226 C = 2503.919647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.164 4.164 3 C -0.150 4.150 4 C -0.124 4.124 5 C 0.067 3.933 6 N -0.527 5.527 7 C 0.207 3.793 8 H 0.010 0.990 9 C -0.135 4.135 10 C -0.501 4.501 11 H 0.061 0.939 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.894 3.106 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.278 1.278 18 C 0.084 3.916 19 H 0.052 0.948 20 H 0.061 0.939 21 H 0.057 0.943 22 H 0.092 0.908 23 H 0.057 0.943 24 H 0.091 0.909 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.031 0.969 28 H 0.006 0.994 29 H 0.087 0.913 30 H 0.260 0.740 31 H 0.079 0.921 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.548 1.096 7.055 8.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.166 4.166 3 C -0.169 4.169 4 C -0.162 4.162 5 C -0.062 4.062 6 N -0.249 5.249 7 C 0.101 3.899 8 H 0.028 0.972 9 C -0.193 4.193 10 C -0.540 4.540 11 H 0.079 0.921 12 C -0.142 4.142 13 N -0.533 5.533 14 Si 0.722 3.278 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.204 1.204 18 C -0.045 4.045 19 H 0.071 0.929 20 H 0.080 0.920 21 H 0.076 0.924 22 H 0.110 0.890 23 H 0.076 0.924 24 H 0.109 0.891 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.050 0.950 28 H 0.025 0.975 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.293 0.663 6.928 8.177 hybrid contribution 0.374 1.049 -0.555 1.244 sum -3.919 1.713 6.373 7.675 Atomic orbital electron populations 1.20845 0.93284 1.01417 1.01409 1.21774 0.95683 0.97287 1.01869 1.22028 0.96533 0.96492 1.01810 1.21038 0.92580 0.99559 1.03066 1.22004 0.99980 0.88610 0.95602 1.62883 1.11433 1.42700 1.07846 1.19293 0.96330 0.93495 0.80745 0.97193 1.21855 0.95038 0.98298 1.04093 1.21134 0.92156 1.46893 0.93780 0.92110 1.24919 0.97218 0.95624 0.96486 1.69887 1.32107 1.49415 1.01856 0.86630 0.85376 0.78642 0.77163 1.20274 1.21437 1.20387 1.21032 0.89892 0.93231 1.00315 0.92924 0.92039 0.92382 0.88965 0.92409 0.89100 0.93239 0.90041 0.95002 0.97487 0.89477 0.93028 0.90283 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 10.01 36.01 0.36 -1.28 16 2 C -0.16 -2.96 5.42 -101.00 -0.55 -3.51 16 3 C -0.15 -2.78 8.88 -35.88 -0.32 -3.10 16 4 C -0.12 -2.41 5.52 -28.03 -0.15 -2.56 16 5 C 0.07 1.34 5.58 -3.60 -0.02 1.32 16 6 N -0.53 -11.69 4.88 -229.52 -1.12 -12.81 16 7 C 0.21 5.27 1.37 -68.87 -0.09 5.18 16 8 H 0.01 0.29 5.83 -51.93 -0.30 -0.01 16 9 C -0.13 -3.38 8.70 37.16 0.32 -3.06 16 10 C -0.50 -13.70 7.65 -34.44 -0.26 -13.97 16 11 H 0.06 1.66 6.38 -52.49 -0.33 1.32 16 12 C 0.06 1.62 5.29 -17.82 -0.09 1.52 16 13 N -0.89 -25.62 11.28 55.43 0.63 -25.00 16 14 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 C 0.08 1.61 5.51 -5.27 -0.03 1.58 16 19 H 0.05 0.71 7.61 -51.93 -0.40 0.31 16 20 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 22 H 0.09 1.54 7.63 -52.49 -0.40 1.14 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.09 2.05 6.75 -51.93 -0.35 1.70 16 25 H 0.05 0.89 8.08 -51.92 -0.42 0.47 16 26 H 0.08 1.72 6.43 -51.93 -0.33 1.39 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.01 0.14 6.52 -51.93 -0.34 -0.19 16 29 H 0.09 2.39 5.92 -51.93 -0.31 2.08 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.08 1.53 5.92 -51.93 -0.31 1.23 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 247.03 15.07 3.72 3.72 Total: -1.00 -28.40 247.03 -7.37 -35.77 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -4.74 Total: -0.20 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -0.84 Total: -17.87 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: -0.50 Total: -37.81 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.40 -7.37 -35.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307126288.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.123 kcal (2) G-P(sol) polarization free energy of solvation -28.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds