Wall clock time and date at job start Mon Mar 30 2020 01:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.29823 * 118.35419 * 2 1 4 4 C 1.50313 * 122.88842 * 180.41952 * 3 2 1 5 5 C 1.53080 * 109.71988 * 343.48256 * 4 3 2 6 6 N 1.47241 * 108.47080 * 48.96252 * 5 4 3 7 7 C 1.46897 * 111.00217 * 54.58777 * 6 5 4 8 8 H 1.09000 * 109.46434 * 295.58296 * 7 6 5 9 9 C 1.52997 * 109.47177 * 175.58663 * 7 6 5 10 10 C 1.50701 * 109.47107 * 55.58030 * 7 6 5 11 11 H 1.07999 * 119.99736 * 359.73072 * 10 7 6 12 12 C 1.37875 * 119.99761 * 180.02562 * 10 7 6 13 13 N 1.31516 * 120.00017 * 359.72509 * 12 10 7 14 14 Si 1.86801 * 119.99855 * 179.72918 * 12 10 7 15 15 H 1.48499 * 109.47222 * 59.99613 * 14 12 10 16 16 H 1.48497 * 109.47183 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47042 * 299.99719 * 14 12 10 18 18 C 1.46847 * 110.20480 * 291.19228 * 6 5 4 19 19 H 1.09003 * 109.47412 * 359.97438 * 1 2 3 20 20 H 1.08994 * 109.47511 * 119.99996 * 1 2 3 21 21 H 1.09002 * 109.46893 * 239.99932 * 1 2 3 22 22 H 1.08000 * 118.55666 * 0.39729 * 3 2 1 23 23 H 1.09001 * 109.42856 * 223.40318 * 4 3 2 24 24 H 1.08999 * 109.42652 * 103.55940 * 4 3 2 25 25 H 1.09007 * 109.63709 * 289.27173 * 5 4 3 26 26 H 1.08998 * 109.81144 * 168.76021 * 5 4 3 27 27 H 1.08996 * 109.46973 * 306.28717 * 9 7 6 28 28 H 1.08998 * 109.47374 * 66.29295 * 9 7 6 29 29 H 1.09001 * 109.47138 * 186.28887 * 9 7 6 30 30 H 0.97006 * 120.00001 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.33372 * 171.16824 * 18 6 5 32 32 H 1.08996 * 109.34021 * 290.68257 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1236 1.1425 0.0000 4 6 3.6220 1.2613 -0.0092 5 6 4.2487 -0.0765 0.3918 6 7 3.6205 -1.1434 -0.4050 7 6 3.7205 -0.8557 -1.8421 8 1 3.1506 0.0443 -2.0728 9 6 3.1572 -2.0343 -2.6386 10 6 5.1658 -0.6439 -2.2125 11 1 5.9329 -0.7115 -1.4552 12 6 5.5083 -0.3578 -3.5170 13 7 4.5742 -0.2751 -4.4391 14 14 7.2991 -0.0877 -3.9748 15 1 8.0806 -1.3102 -3.6585 16 1 7.4004 0.2018 -5.4277 17 1 7.8400 1.0592 -3.2021 18 6 2.2202 -1.3212 -0.0001 19 1 -0.3634 1.0277 0.0005 20 1 -0.3634 -0.5138 -0.8899 21 1 -0.3633 -0.5139 0.8900 22 1 1.5340 2.0473 0.0066 23 1 3.9289 2.0320 0.6978 24 1 3.9579 1.5337 -1.0098 25 1 4.0738 -0.2598 1.4520 26 1 5.3207 -0.0558 0.1957 27 1 3.6520 -2.9538 -2.3259 28 1 2.0860 -2.1178 -2.4555 29 1 3.3324 -1.8710 -3.7020 30 1 4.8152 -0.0741 -5.3570 31 1 1.7260 -1.9978 -0.6973 32 1 2.1857 -1.7504 1.0013 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307126288.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:25 Heat of formation + Delta-G solvation = -2.233657 kcal Electronic energy + Delta-G solvation = -12979.290795 eV Core-core repulsion = 10939.156019 eV Total energy + Delta-G solvation = -2040.134776 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.53900 -35.92177 -34.04029 -32.69481 -30.51125 -28.02444 -26.73689 -25.27143 -23.36191 -21.57713 -18.58868 -17.76700 -17.11916 -16.22067 -15.77344 -15.57824 -15.10369 -14.44091 -14.30941 -13.60539 -13.31534 -13.03234 -12.92456 -12.83920 -12.65594 -12.57033 -12.37121 -12.10606 -11.95727 -11.61884 -11.35926 -10.79819 -10.45385 -9.56194 -8.80756 -8.07448 -6.18518 1.36885 1.42516 1.44095 1.51320 2.44001 3.20450 3.48232 4.02587 4.08713 4.34132 4.45465 4.58920 4.67978 4.72730 4.79619 4.89564 4.96153 4.99529 5.07790 5.09369 5.15865 5.27434 5.35175 5.59160 5.74913 5.79760 5.86679 6.13668 6.32235 6.45555 6.81136 6.97052 7.50113 8.97904 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.048163 B = 0.012009 C = 0.011180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.224984 B = 2330.982226 C = 2503.919647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.167 4.167 3 C -0.168 4.168 4 C -0.119 4.119 5 C 0.066 3.934 6 N -0.539 5.539 7 C 0.217 3.783 8 H -0.020 1.020 9 C -0.126 4.126 10 C -0.514 4.514 11 H 0.056 0.944 12 C 0.011 3.989 13 N -0.921 5.921 14 Si 0.955 3.045 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.272 1.272 18 C 0.080 3.920 19 H 0.064 0.936 20 H 0.060 0.940 21 H 0.081 0.919 22 H 0.110 0.890 23 H 0.083 0.917 24 H 0.050 0.950 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.029 0.971 28 H 0.025 0.975 29 H 0.061 0.939 30 H 0.260 0.740 31 H 0.075 0.925 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.918 1.138 8.265 9.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.168 4.168 3 C -0.187 4.187 4 C -0.157 4.157 5 C -0.062 4.062 6 N -0.261 5.261 7 C 0.110 3.890 8 H -0.002 1.002 9 C -0.184 4.184 10 C -0.552 4.552 11 H 0.074 0.926 12 C -0.187 4.187 13 N -0.561 5.561 14 Si 0.781 3.219 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.197 1.197 18 C -0.048 4.048 19 H 0.083 0.917 20 H 0.079 0.921 21 H 0.100 0.900 22 H 0.128 0.872 23 H 0.101 0.899 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.666 0.704 8.158 9.424 hybrid contribution 0.458 1.012 -0.882 1.418 sum -4.208 1.715 7.276 8.578 Atomic orbital electron populations 1.20853 0.90620 1.02619 1.02477 1.21999 0.97699 0.96366 1.00785 1.22159 0.95948 0.97612 1.02949 1.20919 0.93650 0.99803 1.01347 1.22026 0.98912 0.88654 0.96650 1.62784 1.13782 1.43468 1.06073 1.19007 0.94844 0.92133 0.82967 1.00207 1.21706 0.96267 0.98073 1.02367 1.21404 0.93205 1.46712 0.93886 0.92574 1.25662 1.01095 0.95456 0.96493 1.70016 1.33894 1.50156 1.02024 0.85661 0.80704 0.78703 0.76865 1.19813 1.21143 1.19702 1.21131 0.88220 0.94099 1.01375 0.91740 0.92109 0.90031 0.87198 0.89907 0.93145 0.90574 0.91759 0.95147 0.95614 0.92076 0.93115 0.90681 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.84 10.01 71.24 0.71 -2.13 16 2 C -0.17 -5.66 5.42 -15.45 -0.08 -5.74 16 3 C -0.17 -5.96 8.88 26.74 0.24 -5.72 16 4 C -0.12 -4.54 5.52 29.75 0.16 -4.37 16 5 C 0.07 2.59 5.58 86.26 0.48 3.07 16 6 N -0.54 -23.51 4.88 -880.06 -4.30 -27.81 16 7 C 0.22 11.16 1.37 44.17 0.06 11.22 16 8 H -0.02 -1.11 5.83 -2.39 -0.01 -1.13 16 9 C -0.13 -6.36 8.70 71.98 0.63 -5.73 16 10 C -0.51 -28.45 7.65 25.60 0.20 -28.25 16 11 H 0.06 3.09 6.38 -2.91 -0.02 3.07 16 12 C 0.01 0.62 5.29 84.65 0.45 1.07 16 13 N -0.92 -53.70 11.28 21.45 0.24 -53.45 16 14 Si 0.95 44.16 29.54 68.60 2.03 46.18 16 15 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 16 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 C 0.08 2.91 5.51 85.39 0.47 3.38 16 19 H 0.06 1.53 7.61 -2.39 -0.02 1.52 16 20 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 21 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.11 3.44 7.63 -2.91 -0.02 3.42 16 23 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 24 H 0.05 2.33 6.75 -2.39 -0.02 2.31 16 25 H 0.08 2.58 8.08 -2.38 -0.02 2.56 16 26 H 0.06 2.72 6.43 -2.39 -0.02 2.70 16 27 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.02 1.15 6.52 -2.39 -0.02 1.13 16 29 H 0.06 3.41 5.92 -2.39 -0.01 3.39 16 30 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 31 H 0.07 2.78 5.92 -2.39 -0.01 2.76 16 32 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -60.37 247.03 2.37 -58.00 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 1.09 Total: 10.28 kcal Atomic # 6 Polarization: -36.51 SS G_CDS: 3.31 Total: -33.20 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -4.06 Total: -81.26 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -60.37 2.37 -58.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307126288.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.767 kcal (2) G-P(sol) polarization free energy of solvation -60.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds