Wall clock time and date at job start Mon Mar 30 2020 02:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.29818 * 118.36016 * 2 1 4 4 C 1.50304 * 122.89592 * 180.32981 * 3 2 1 5 5 H 1.09006 * 109.42944 * 103.60091 * 4 3 2 6 6 C 1.53000 * 109.39362 * 223.47467 * 4 3 2 7 7 C 1.53088 * 109.71743 * 343.52670 * 4 3 2 8 8 N 1.47239 * 108.63979 * 48.85872 * 7 4 3 9 9 C 1.46906 * 111.00004 * 167.91053 * 8 7 4 10 10 C 1.50699 * 109.47184 * 169.99725 * 9 8 7 11 11 H 1.08007 * 120.00154 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99902 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00041 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99996 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47515 * 89.99584 * 14 12 10 16 16 H 1.48504 * 109.46998 * 210.00270 * 14 12 10 17 17 H 1.48501 * 109.46964 * 329.99482 * 14 12 10 18 18 C 1.46788 * 110.23289 * 291.49330 * 8 7 4 19 19 H 1.09005 * 109.47218 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47359 * 120.00003 * 1 2 3 21 21 H 1.09005 * 109.46817 * 239.99752 * 1 2 3 22 22 H 1.08006 * 118.55215 * 0.35048 * 3 2 1 23 23 H 1.08992 * 109.47604 * 180.22299 * 6 4 3 24 24 H 1.09008 * 109.46881 * 300.22912 * 6 4 3 25 25 H 1.09002 * 109.46682 * 60.22410 * 6 4 3 26 26 H 1.09002 * 109.63898 * 168.65813 * 7 4 3 27 27 H 1.08999 * 109.63598 * 289.06339 * 7 4 3 28 28 H 1.08996 * 109.46942 * 290.00160 * 9 8 7 29 29 H 1.09004 * 109.47018 * 50.00131 * 9 8 7 30 30 H 0.96998 * 119.99664 * 179.97438 * 13 12 10 31 31 H 1.08999 * 109.15277 * 290.39731 * 18 8 7 32 32 H 1.09000 * 109.37802 * 170.97854 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1236 1.1424 0.0000 4 6 3.6219 1.2612 -0.0073 5 1 3.9592 1.5336 -1.0074 6 6 4.0506 2.3427 0.9865 7 6 4.2481 -0.0767 0.3946 8 7 3.6217 -1.1468 -0.3993 9 6 4.3697 -2.4046 -0.2706 10 6 3.5755 -3.5268 -0.8876 11 1 2.6115 -3.3258 -1.3314 12 6 4.0794 -4.8102 -0.8856 13 7 5.2534 -5.0549 -0.3457 14 14 3.0952 -6.2012 -1.6511 15 1 3.4526 -6.3290 -3.0867 16 1 3.4056 -7.4722 -0.9485 17 1 1.6447 -5.9083 -1.5263 18 6 2.2201 -1.3213 0.0004 19 1 -0.3634 1.0277 0.0005 20 1 -0.3634 -0.5138 -0.8900 21 1 -0.3633 -0.5139 0.8900 22 1 1.5340 2.0473 0.0058 23 1 5.1368 2.4328 0.9794 24 1 3.6050 3.2957 0.7010 25 1 3.7152 2.0701 1.9872 26 1 5.3199 -0.0535 0.1971 27 1 4.0750 -0.2582 1.4553 28 1 5.3270 -2.3120 -0.7836 29 1 4.5420 -2.6186 0.7842 30 1 5.6076 -5.9578 -0.3439 31 1 2.1846 -1.7503 1.0018 32 1 1.7266 -1.9981 -0.6971 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307747078.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:24 Heat of formation + Delta-G solvation = -13.588305 kcal Electronic energy + Delta-G solvation = -12463.145988 eV Core-core repulsion = 10422.518838 eV Total energy + Delta-G solvation = -2040.627150 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.18341 -36.04980 -34.39267 -34.10277 -29.30244 -27.81557 -27.51737 -25.62536 -22.57449 -22.15169 -18.71705 -18.30135 -17.10778 -16.30320 -16.02779 -15.33832 -15.13491 -14.42760 -14.27935 -13.85590 -13.60816 -13.38159 -13.17894 -12.93488 -12.74691 -12.72347 -12.38407 -12.26447 -11.96988 -11.79147 -11.16134 -11.02080 -10.67475 -9.61412 -9.04919 -8.25469 -6.36467 1.38784 1.39254 1.41053 1.51782 2.37409 3.07517 3.26551 3.80497 4.01349 4.15250 4.39735 4.50041 4.53107 4.63726 4.76396 4.77339 4.85693 4.91106 4.96024 5.10323 5.14409 5.22368 5.25611 5.33186 5.41888 5.56480 5.74439 5.93721 6.09585 6.36219 6.59824 6.80843 7.34032 8.86875 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.045796 B = 0.009819 C = 0.008307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.264361 B = 2850.914877 C = 3369.904392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.145 4.145 3 C -0.149 4.149 4 C -0.055 4.055 5 H 0.080 0.920 6 C -0.132 4.132 7 C 0.053 3.947 8 N -0.543 5.543 9 C 0.206 3.794 10 C -0.536 4.536 11 H 0.069 0.931 12 C 0.002 3.998 13 N -0.933 5.933 14 Si 0.972 3.028 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.262 1.262 18 C 0.103 3.897 19 H 0.082 0.918 20 H 0.064 0.936 21 H 0.065 0.935 22 H 0.132 0.868 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.018 0.982 28 H 0.005 0.995 29 H -0.040 1.040 30 H 0.266 0.734 31 H 0.015 0.985 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.219 11.858 1.539 13.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.145 4.145 3 C -0.167 4.167 4 C -0.074 4.074 5 H 0.098 0.902 6 C -0.189 4.189 7 C -0.076 4.076 8 N -0.267 5.267 9 C 0.079 3.921 10 C -0.574 4.574 11 H 0.087 0.913 12 C -0.197 4.197 13 N -0.573 5.573 14 Si 0.796 3.204 15 H -0.197 1.197 16 H -0.206 1.206 17 H -0.186 1.186 18 C -0.025 4.025 19 H 0.101 0.899 20 H 0.083 0.917 21 H 0.084 0.916 22 H 0.150 0.850 23 H 0.080 0.920 24 H 0.097 0.903 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.036 0.964 28 H 0.023 0.977 29 H -0.023 1.023 30 H 0.074 0.926 31 H 0.033 0.967 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.080 11.855 1.080 13.850 hybrid contribution 0.166 -1.467 0.620 1.601 sum -6.914 10.387 1.700 12.594 Atomic orbital electron populations 1.20847 0.90115 1.03361 1.02213 1.21339 0.97252 0.94068 1.01844 1.22270 0.95550 0.97283 1.01579 1.20105 0.93130 0.93704 1.00419 0.90164 1.21701 1.01562 0.97667 0.97987 1.22298 0.98551 0.92502 0.94218 1.62370 1.02469 1.07475 1.54415 1.19406 0.93436 0.86405 0.92811 1.21605 1.05047 0.92803 1.37919 0.91275 1.25985 0.96168 1.01746 0.95773 1.70099 1.19333 1.21889 1.45997 0.85342 0.79045 0.77568 0.78451 1.19683 1.20570 1.18628 1.20658 0.88992 0.95349 0.97505 0.89878 0.91693 0.91640 0.85022 0.92036 0.90319 0.93051 0.91880 0.96409 0.97671 1.02254 0.92564 0.96742 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.72 10.01 71.23 0.71 -2.01 16 2 C -0.14 -4.77 5.91 -15.44 -0.09 -4.86 16 3 C -0.15 -4.34 8.77 26.74 0.23 -4.10 16 4 C -0.06 -1.66 3.16 -11.63 -0.04 -1.70 16 5 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 6 C -0.13 -2.96 9.14 71.98 0.66 -2.31 16 7 C 0.05 2.06 4.84 86.27 0.42 2.48 16 8 N -0.54 -25.62 4.86 -905.63 -4.40 -30.02 16 9 C 0.21 11.65 4.97 85.56 0.43 12.08 16 10 C -0.54 -31.34 8.51 25.60 0.22 -31.12 16 11 H 0.07 3.91 5.84 -2.91 -0.02 3.90 16 12 C 0.00 0.10 5.46 84.65 0.46 0.56 16 13 N -0.93 -57.41 13.29 21.45 0.28 -57.13 16 14 Si 0.97 44.83 29.54 68.60 2.03 46.86 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 17 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 18 C 0.10 4.40 4.73 85.40 0.40 4.81 16 19 H 0.08 1.63 7.61 -2.38 -0.02 1.61 16 20 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 21 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 22 H 0.13 2.96 7.63 -2.91 -0.02 2.94 16 23 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 25 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 2.47 8.06 -2.39 -0.02 2.45 16 27 H 0.02 0.71 8.05 -2.39 -0.02 0.69 16 28 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 29 H -0.04 -2.46 8.08 -2.38 -0.02 -2.48 16 30 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.01 0.67 8.12 -2.39 -0.02 0.65 16 32 H 0.07 3.33 6.07 -2.39 -0.01 3.31 16 Total: -1.00 -65.69 259.28 2.38 -63.30 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: 1.07 Total: 3.17 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: 3.40 Total: -26.18 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -4.11 Total: -87.15 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -65.69 2.38 -63.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307747078.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.715 kcal (2) G-P(sol) polarization free energy of solvation -65.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds