Wall clock time and date at job start Mon Mar 30 2020 02:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47294 * 60.00559 * 8 6 4 10 10 H 1.48503 * 109.46954 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47431 * 300.00157 * 8 6 4 12 12 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 13 13 C 1.46900 * 110.99890 * 274.99873 * 12 2 1 14 14 H 1.09003 * 115.55006 * 9.27994 * 13 12 2 15 15 C 1.52993 * 117.50209 * 223.60989 * 13 12 2 16 16 C 1.52995 * 60.00252 * 252.50864 * 15 13 12 17 17 H 1.09005 * 117.49769 * 107.48339 * 16 15 13 18 18 C 1.53001 * 117.50249 * 252.50865 * 16 15 13 19 19 C 1.52994 * 117.50327 * 197.36532 * 18 16 15 20 20 C 1.53003 * 117.50082 * 128.70449 * 18 16 15 21 21 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 22 22 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 23 23 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 24 24 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 25 25 H 1.00898 * 111.00476 * 38.95263 * 12 2 1 26 26 H 1.08999 * 117.49956 * 359.97438 * 15 13 12 27 27 H 1.09004 * 117.50106 * 144.99876 * 15 13 12 28 28 H 1.09003 * 115.54610 * 343.04166 * 18 16 15 29 29 H 1.09002 * 117.49615 * 0.02562 * 19 18 16 30 30 H 1.09001 * 117.50062 * 145.01926 * 19 18 16 31 31 H 1.09000 * 117.49750 * 214.98756 * 20 18 16 32 32 H 1.09000 * 117.49759 * 0.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0077 10 1 1.8271 -0.4199 -5.2204 11 1 3.8066 -1.1210 -4.0081 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2225 2.3469 14 1 1.6230 1.1993 2.1950 15 6 3.3264 0.1576 3.2351 16 6 1.9925 -0.3910 3.7456 17 1 1.8868 -1.4737 3.8143 18 6 1.2643 0.4132 4.8244 19 6 0.1714 -0.3016 5.6215 20 6 -0.2071 0.7537 4.5793 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7096 1.1617 -3.4844 25 1 1.4495 -1.4979 1.4101 26 1 4.0981 -0.5645 2.9684 27 1 3.6854 1.0915 3.6676 28 1 1.8705 1.1505 5.3507 29 1 -0.0286 -1.3450 5.3777 30 1 0.0583 -0.0344 6.6722 31 1 -0.5689 1.7148 4.9447 32 1 -0.6564 0.4044 3.6497 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307972003.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:37 Heat of formation + Delta-G solvation = 42.044769 kcal Electronic energy + Delta-G solvation = -12184.916153 eV Core-core repulsion = 10146.701433 eV Total energy + Delta-G solvation = -2038.214719 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.42564 -35.89772 -33.95691 -31.51201 -27.37953 -25.10456 -23.42429 -22.31470 -21.11287 -19.99072 -19.52504 -16.28660 -15.55457 -15.26057 -14.61699 -14.20202 -13.21152 -12.84727 -12.39900 -12.19764 -11.53026 -11.42043 -11.14511 -10.97688 -10.91773 -10.67919 -10.57158 -10.47320 -10.12984 -9.98093 -9.73613 -9.16550 -8.91335 -8.33963 -7.14677 -5.96673 -3.99975 3.36101 3.39705 3.43284 3.82445 4.33530 4.45178 4.80667 5.02912 5.07636 5.21682 5.34836 5.49170 5.65917 5.69445 5.72302 5.98755 6.02457 6.21360 6.23301 6.32247 6.52165 6.61143 6.72635 6.86895 7.12223 7.40706 7.75906 7.91444 8.30502 8.54573 8.63981 9.06778 9.65122 11.10472 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.064737 B = 0.007697 C = 0.007255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.412888 B = 3636.791773 C = 3858.551619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.213 3.787 3 H 0.035 0.965 4 C -0.497 4.497 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.654 5.654 13 C 0.046 3.954 14 H 0.091 0.909 15 C -0.169 4.169 16 C -0.150 4.150 17 H 0.101 0.899 18 C -0.117 4.117 19 C -0.181 4.181 20 C -0.179 4.179 21 H 0.006 0.994 22 H 0.088 0.912 23 H 0.027 0.973 24 H 0.260 0.740 25 H 0.327 0.673 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.867 -0.636 11.893 11.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.105 3.895 3 H 0.053 0.947 4 C -0.535 4.535 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.283 5.283 13 C -0.065 4.065 14 H 0.109 0.891 15 C -0.208 4.208 16 C -0.169 4.169 17 H 0.119 0.881 18 C -0.135 4.135 19 C -0.218 4.218 20 C -0.216 4.216 21 H 0.025 0.975 22 H 0.107 0.893 23 H 0.046 0.954 24 H 0.070 0.930 25 H 0.146 0.854 26 H 0.113 0.887 27 H 0.103 0.897 28 H 0.119 0.881 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.286 -0.445 11.543 11.555 hybrid contribution -0.674 -0.296 -0.614 0.959 sum -0.961 -0.741 10.929 10.996 Atomic orbital electron populations 1.22449 1.00602 0.99151 1.00518 1.19235 0.89628 0.94417 0.86177 0.94713 1.21118 1.30309 1.12476 0.89645 0.92025 1.24947 0.95328 0.95214 0.99031 1.69876 1.37289 1.23160 1.23445 0.86554 0.79190 0.79577 0.82002 1.20379 1.21445 1.20282 1.60563 1.57084 1.08275 1.02410 1.22517 0.99819 0.97442 0.86749 0.89101 1.23207 0.91710 1.02001 1.03877 1.22140 1.01083 0.98281 0.95406 0.88076 1.21747 0.90500 1.01597 0.99689 1.22953 1.04183 0.97978 0.96638 1.22972 0.98153 0.99601 1.00848 0.97538 0.89299 0.95419 0.93011 0.85433 0.88701 0.89681 0.88139 0.88961 0.89269 0.89189 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 8.94 37.16 0.33 -3.75 16 2 C 0.21 5.44 2.47 -68.86 -0.17 5.27 16 3 H 0.03 0.98 7.73 -51.93 -0.40 0.58 16 4 C -0.50 -13.97 8.84 -34.44 -0.30 -14.27 16 5 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.06 1.55 5.30 -17.82 -0.09 1.46 16 7 N -0.90 -25.96 11.32 55.43 0.63 -25.33 16 8 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.65 -14.26 6.48 -100.95 -0.65 -14.91 16 13 C 0.05 0.86 5.61 -67.72 -0.38 0.48 16 14 H 0.09 1.79 7.77 -51.93 -0.40 1.38 16 15 C -0.17 -2.72 10.18 -26.74 -0.27 -3.00 16 16 C -0.15 -2.28 5.67 -90.62 -0.51 -2.79 16 17 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 18 C -0.12 -1.54 5.87 -90.62 -0.53 -2.07 16 19 C -0.18 -2.09 10.25 -26.70 -0.27 -2.37 16 20 C -0.18 -2.30 10.18 -26.69 -0.27 -2.57 16 21 H 0.01 0.12 8.07 -51.93 -0.42 -0.29 16 22 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 23 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.33 6.78 8.43 -39.29 -0.33 6.45 16 26 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 27 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 269.43 15.07 4.06 4.06 Total: -1.00 -28.26 269.43 -8.69 -36.95 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.22 Total: 6.14 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: -2.48 Total: -23.60 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: -0.03 Total: -40.24 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.26 -8.69 -36.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307972003.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.992 kcal (2) G-P(sol) polarization free energy of solvation -28.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds