Wall clock time and date at job start Mon Mar 30 2020 02:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47294 * 60.00559 * 8 6 4 10 10 H 1.48503 * 109.46954 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47431 * 300.00157 * 8 6 4 12 12 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 13 13 C 1.46900 * 110.99890 * 274.99873 * 12 2 1 14 14 H 1.09003 * 115.55006 * 9.27994 * 13 12 2 15 15 C 1.52993 * 117.50209 * 223.60989 * 13 12 2 16 16 C 1.52995 * 60.00252 * 252.50864 * 15 13 12 17 17 H 1.09005 * 117.49769 * 107.48339 * 16 15 13 18 18 C 1.53001 * 117.50249 * 252.50865 * 16 15 13 19 19 C 1.52994 * 117.50327 * 197.36532 * 18 16 15 20 20 C 1.53003 * 117.50082 * 128.70449 * 18 16 15 21 21 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 22 22 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 23 23 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 24 24 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 25 25 H 1.00898 * 111.00476 * 38.95263 * 12 2 1 26 26 H 1.08999 * 117.49956 * 359.97438 * 15 13 12 27 27 H 1.09004 * 117.50106 * 144.99876 * 15 13 12 28 28 H 1.09003 * 115.54610 * 343.04166 * 18 16 15 29 29 H 1.09002 * 117.49615 * 0.02562 * 19 18 16 30 30 H 1.09001 * 117.50062 * 145.01926 * 19 18 16 31 31 H 1.09000 * 117.49750 * 214.98756 * 20 18 16 32 32 H 1.09000 * 117.49759 * 0.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0077 10 1 1.8271 -0.4199 -5.2204 11 1 3.8066 -1.1210 -4.0081 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2225 2.3469 14 1 1.6230 1.1993 2.1950 15 6 3.3264 0.1576 3.2351 16 6 1.9925 -0.3910 3.7456 17 1 1.8868 -1.4737 3.8143 18 6 1.2643 0.4132 4.8244 19 6 0.1714 -0.3016 5.6215 20 6 -0.2071 0.7537 4.5793 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7096 1.1617 -3.4844 25 1 1.4495 -1.4979 1.4101 26 1 4.0981 -0.5645 2.9684 27 1 3.6854 1.0915 3.6676 28 1 1.8705 1.1505 5.3507 29 1 -0.0286 -1.3450 5.3777 30 1 0.0583 -0.0344 6.6722 31 1 -0.5689 1.7148 4.9447 32 1 -0.6564 0.4044 3.6497 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307972003.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:36 Heat of formation + Delta-G solvation = 25.496543 kcal Electronic energy + Delta-G solvation = -12185.633737 eV Core-core repulsion = 10146.701433 eV Total energy + Delta-G solvation = -2038.932304 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.71017 -37.38982 -35.61836 -33.46761 -29.23689 -27.24248 -24.60120 -23.30098 -22.77317 -21.70669 -20.77761 -18.32711 -17.00671 -16.59985 -16.43340 -15.57406 -14.83831 -14.50297 -14.21455 -13.77513 -13.27091 -12.88478 -12.82918 -12.48155 -12.42766 -12.24504 -12.17811 -12.04551 -11.84478 -11.61252 -11.11346 -10.82604 -10.50682 -10.43699 -8.84900 -8.10603 -6.22482 1.43146 1.45309 1.53107 2.43436 2.71986 3.10654 3.17624 3.50773 3.81269 3.98703 4.14931 4.21377 4.49110 4.49658 4.58022 4.70931 4.79182 4.82437 4.93019 5.01735 5.04266 5.13317 5.28354 5.32917 5.37521 5.43793 5.67461 5.82774 6.26607 6.63871 6.81026 6.92244 7.47542 8.94976 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.064737 B = 0.007697 C = 0.007255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.412888 B = 3636.791773 C = 3858.551619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.220 3.780 3 H 0.000 1.000 4 C -0.520 4.520 5 H 0.054 0.946 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.963 3.037 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.274 1.274 12 N -0.658 5.658 13 C 0.013 3.987 14 H 0.075 0.925 15 C -0.160 4.160 16 C -0.121 4.121 17 H 0.105 0.895 18 C -0.129 4.129 19 C -0.162 4.162 20 C -0.188 4.188 21 H 0.024 0.976 22 H 0.062 0.938 23 H 0.031 0.969 24 H 0.262 0.738 25 H 0.331 0.669 26 H 0.091 0.909 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.675 -1.280 13.109 13.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.111 3.889 3 H 0.018 0.982 4 C -0.558 4.558 5 H 0.073 0.927 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.789 3.211 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.199 1.199 12 N -0.287 5.287 13 C -0.098 4.098 14 H 0.093 0.907 15 C -0.199 4.199 16 C -0.140 4.140 17 H 0.123 0.877 18 C -0.147 4.147 19 C -0.199 4.199 20 C -0.225 4.225 21 H 0.043 0.957 22 H 0.080 0.920 23 H 0.050 0.950 24 H 0.071 0.929 25 H 0.150 0.850 26 H 0.109 0.891 27 H 0.122 0.878 28 H 0.133 0.867 29 H 0.112 0.888 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.091 -1.092 12.782 12.829 hybrid contribution -0.736 -0.068 -0.933 1.191 sum -0.827 -1.160 11.849 11.934 Atomic orbital electron populations 1.22234 0.99819 0.99157 1.00007 1.18956 0.90097 0.92522 0.87314 0.98238 1.21429 1.30688 1.12603 0.91123 0.92733 1.25747 0.95390 0.95880 1.01976 1.70007 1.37950 1.24224 1.24136 0.85533 0.78631 0.78673 0.78286 1.19541 1.20842 1.19907 1.60445 1.56867 1.08754 1.02607 1.22466 1.02991 0.96760 0.87585 0.90686 1.23265 0.91383 1.02864 1.02340 1.22142 1.00009 0.98604 0.93267 0.87746 1.21797 0.90756 1.02400 0.99785 1.23055 1.01690 0.97640 0.97474 1.22979 0.97783 1.00974 1.00797 0.95747 0.91953 0.94991 0.92920 0.85045 0.89066 0.87822 0.86702 0.88845 0.86903 0.87807 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.55 8.94 71.98 0.64 -6.90 16 2 C 0.22 11.51 2.47 44.17 0.11 11.62 16 3 H 0.00 -0.02 7.73 -2.39 -0.02 -0.04 16 4 C -0.52 -29.67 8.84 25.60 0.23 -29.44 16 5 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.46 5.30 84.66 0.45 0.91 16 7 N -0.92 -54.16 11.32 21.45 0.24 -53.92 16 8 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 12 N -0.66 -28.94 6.48 -473.31 -3.07 -32.01 16 13 C 0.01 0.48 5.61 44.91 0.25 0.73 16 14 H 0.08 3.01 7.77 -2.39 -0.02 2.99 16 15 C -0.16 -4.93 10.18 30.59 0.31 -4.62 16 16 C -0.12 -3.47 5.67 -10.80 -0.06 -3.53 16 17 H 0.10 2.95 8.14 -2.38 -0.02 2.93 16 18 C -0.13 -3.08 5.87 -10.79 -0.06 -3.14 16 19 C -0.16 -3.25 10.25 30.62 0.31 -2.94 16 20 C -0.19 -4.49 10.18 30.62 0.31 -4.18 16 21 H 0.02 1.06 8.07 -2.39 -0.02 1.05 16 22 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 23 H 0.03 1.50 8.13 -2.39 -0.02 1.48 16 24 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 25 H 0.33 13.73 8.43 -89.70 -0.76 12.98 16 26 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 27 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 28 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -60.38 269.43 2.02 -58.35 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.33 Total: 22.46 kcal Atomic # 6 Polarization: -43.99 SS G_CDS: 2.49 Total: -41.50 kcal Atomic # 7 Polarization: -83.10 SS G_CDS: -2.82 Total: -85.93 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -60.38 2.02 -58.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307972003.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.850 kcal (2) G-P(sol) polarization free energy of solvation -60.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds